Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1453 ATGAGGAATTTGAACTTGTTCAAGCCAATTTCGATCAATGGGAAGCCTGGGAGGAGACTTTCGCTTGGGGAGTACGAGCGGGCGGTGTCGTGGTCTAAATACTTAGTGTCGTCTGGAGCAGAGATTAAGGGAGAGGGAGAAGAGGAATGGAGTGCGGATATGTCGCAGTTGTTTATTGGCTTCAAATTTGCTACGGGAAGACACAGCAGAATTTATAGAGGCGTGTATAAGCAGAGGGATGTTGCGATCAAGCTTATAAGCCAGCCCGAGGAGGACGAAAATTTGGCAAACTTTCTTGAGAATCAGTTTATTTCAGAAGTGGCATTGCTGTTTCGACTGGAACACGCCAATATCATCACTTTTATTGCAGCTTGCAAAAAACCTCCAGTGTTTTGTATTATAATGGAGTATATGGCGGGGGGATCATTGAGGAAATATCTTCACCAGCAGGAGCCACATTCTGTTCCGCTGAACTTGGTTCTAAAACTAGCCCTCGACATCTCACGTGGGATGCAGTACCTTCATTCTCAGGGAATACTCCACAGAGATCTCAAATCTGAGAACCTTTTGCTTGGTGAAGACATGTGTGTGAAGGTAGCAGATTTCGGCATCTCGTGCTTAGAATCTCAGTGCGGAAGCGCAAAGGGATTCACGGGAACATACCGCTGGATGGCACCTGAAATGATCAAAGAAAAACATCACACCAAGAAAGTTGATGTTTATAGCTTTGGCATTGTCTTGTGGGAGCTATTAACCGCATTGACACCATTTGATAACATGACTCCTGAACAGGCAGCATTTGCAGTCTGCCAGAAGAATGCAAGACCACCGCTGCCAACAGCGTGCCCACCGGCGTTTCGTCACCTGATCAAGAGATGCTGGTCGAAAAATCCAGACAAGCGACCGCATTTTGACGAGATTGTCTCAATTTTGGAAACTTATACGGAGTCTTATAATGAAGATCCAGAATTTTTCTGTCACTATGAGCCATCATCTAATCATACTGTCTTACAATGCTTACCGAATTGTATTACTAAACGATTGCCCGCTTCTCCCAAGCCTAGGAATTCATCATCCTGA 1080 45.0 MRNLNLFKPISINGKPGRRLSLGEYERAVSWSKYLVSSGAEIKGEGEEEWSADMSQLFIGFKFATGRHSRIYRGVYKQRDVAIKLISQPEEDENLANFLENQFISEVALLFRLEHANIITFIAACKKPPVFCIIMEYMAGGSLRKYLHQQEPHSVPLNLVLKLALDISRGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPTACPPAFRHLIKRCWSKNPDKRPHFDEIVSILETYTESYNEDPEFFCHYEPSSNHTVLQCLPNCITKRLPASPKPRNSSS 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16850732 16853838 - MC03g1043 Mch3g1453 684356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1453 359 PANTHER SERINE-THREONINE PROTEIN KINASE 55 312 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Mch3g1453 359 SMART serkin_6 57 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1453 359 Pfam Protein tyrosine and serine/threonine kinase 63 311 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1453 359 FunFam Serine/threonine-protein kinase isoform 1 47 139 - -
Mch3g1453 359 CDD STKc_MAP3K-like 66 311 - -
Mch3g1453 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1453 359 Gene3D Phosphorylase Kinase; domain 1 45 139 - -
Mch3g1453 359 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1453 359 Gene3D Transferase(Phosphotransferase) domain 1 140 337 - -
Mch3g1453 359 SUPERFAMILY Protein kinase-like (PK-like) 47 311 IPR011009 -
Mch3g1453 359 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1453 359 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1453 359 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1453 359 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1453 359 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1871 Mch-Chr1:18761058 Mch3g1453 Mch-Chr3:16850732 4.62E-112 dispersed
Mch3g1125 Mch-Chr3:14599627 Mch3g1453 Mch-Chr3:16850732 5.18E-109 dispersed
Mch3g1453 Mch-Chr3:16850732 Mch8g2582 Mch-Chr8:28960626 8.48E-98 dispersed
Mch3g1453 Mch-Chr3:16850732 Mch1g1718 Mch-Chr1:17777500 1.22E-139 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77282 PF07714 PK_Tyr_Ser-Thr 1.30E-65 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1453 - - - 0.0