Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1454 ATGTACGCGTGGTCCTCCCCACCCGCTCCACCCTTGATTCGACCTCCATGGAAGCCGTCTTCCGCGAACTTTCAGACTCTTTTCAGCCGCCGCCACCTGATTACCACTCTGATTTCGATCTTTACCCCCTCTTTTGCCGGTTTTACTTTGCCCATTTCTCCTGATTTTGTTGCTGAAGCTCGGGGTCTGTTCCAGATGCCGCCTGCTCGTCTCGTCAACAGGTACTTTTTGGTGAGGGCGGGGGAGTCTGAATTCGACAGTTTTGGAATAATTAACACAAACCCAGTTGCTAAGACATCTGTTGATAGCGGATTGTCTGAGAAAGGGAAGAGGCAAACTGTTAAAGCGGCCTTTGAATTGAAGGAATTGGGGGCCTGTGAAAATGGTTGCTGGATATGGCCCTCTATTACGCAGAGAGCTTATCAGGCAGCAGAGATTATTGCATCAGTAAATGGTGTGAATCGAAGTTATATAGTTCCTGAATACAGTTTTCTCGACGCCCGTGGGCTCGGAGCTTATGAAGGCAAGAGATTGGAATCAGTTTCAGAAGTATATGCTTCAGATACCATCTCTTCAAGCATCAAACCTCCTCCCATTGATGATGGAACCCCAAATGAGAGCGTGTCTGATGTCTTCGTTCGTGTAACGCAACTGATGTCGATTCTCGAAACCCAATACTCTGGTGATACTGTCATCATTGTCTCACCAGATTCCGATAATTTGACAATTCTTCAAGCTGGTTTAATCGGTCTTGACTTGGGAAGGCACCATGATCTTTCCTTTGCTCCCGGGGAAGTTCGCTTCATCGACACAAGTAGCATCCCTTCCTATAAGCAACCAGCTTCAGCTGTTGATTATACCTCTGTGTTTGCTTTTCGCCTTTTGCTGTTCATAGATAATGCACTTGCTACTGGAATGGGATTGGATTTTGGATGGCAGCAGCAGTATGCTCGGTTTTGTGGCAGAGTTGTGGTTCTTTCTATTCTTTCTCTATTGCTCTACCCGGTTTTATGTGTGTGGACTGTTATTGGAACCTTGTGGTTTAAAGATGCTAAAGACTGTTTGCCAGAAGAAGGTCAAAAATGGGGTTTTCTCATTTGGTTGCTTTTTAGCTACTGTGCTCTGCTTTGCATTGCTTGCACTTCAGTGGGAAAGTGGTTAGTGCGTAGGCAAGCGCACATGTTACGTGCCCAACAAGGCATACCCGTATCAGAATACGGGGTATTGGTTGACATGATTAGGGTTCCTGATTGGGCATTTGAAGTTGCAGGACTGGAAACACGAGGCTTTGACCAAGATTCTACTGGGTACCATCCCGGGCTTTTCTTAACCTCGGCTCAGAGGGAAGCTGTGGAAGCTCTTATCCAGGAACTTCCAAAGTTCAGGCTAAAGGCAGTCCCAACTGATTGCAGTGAATGCCCGATTTGCCTCGAAGAATTCCATGTCGGTAATGAGGTTCGCGGTATGCCGTGTGCTCACAACTTCCACGTCGAATGTATCGATGAGTGGCTTCGTCTTAATGTCAAATGTCCTCGGTGCCGCTCCTCAGTCTTCCCAAATCTTGATCTCAGCGCTCTTTCTGACCTGCGTTCGGACACAGACCAAACACCCACCAATGGTTACATAACAAGGCAACCTTCAAGTCTATCGACATCCAGTCCAGTCCCTGCAGCTCATACAGTAAACACACAAGCCTCGATACCGACACTGCCATAG 1716 47.2 MYAWSSPPAPPLIRPPWKPSSANFQTLFSRRHLITTLISIFTPSFAGFTLPISPDFVAEARGLFQMPPARLVNRYFLVRAGESEFDSFGIINTNPVAKTSVDSGLSEKGKRQTVKAAFELKELGACENGCWIWPSITQRAYQAAEIIASVNGVNRSYIVPEYSFLDARGLGAYEGKRLESVSEVYASDTISSSIKPPPIDDGTPNESVSDVFVRVTQLMSILETQYSGDTVIIVSPDSDNLTILQAGLIGLDLGRHHDLSFAPGEVRFIDTSSIPSYKQPASAVDYTSVFAFRLLLFIDNALATGMGLDFGWQQQYARFCGRVVVLSILSLLLYPVLCVWTVIGTLWFKDAKDCLPEEGQKWGFLIWLLFSYCALLCIACTSVGKWLVRRQAHMLRAQQGIPVSEYGVLVDMIRVPDWAFEVAGLETRGFDQDSTGYHPGLFLTSAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGMPCAHNFHVECIDEWLRLNVKCPRCRSSVFPNLDLSALSDLRSDTDQTPTNGYITRQPSSLSTSSPVPAAHTVNTQASIPTLP 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16857051 16864506 - MC03g1044 Mch3g1454 684357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1454 571 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 284 549 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
Mch3g1454 571 Pfam Ring finger domain 472 514 IPR001841 -
Mch3g1454 571 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 442 519 IPR013083 -
Mch3g1454 571 Gene3D - 73 282 IPR029033 -
Mch3g1454 571 FunFam E3 ubiquitin-protein ligase SIS3 441 519 - -
Mch3g1454 571 SUPERFAMILY RING/U-box 455 521 - -
Mch3g1454 571 ProSiteProfiles Zinc finger RING-type profile. 473 514 IPR001841 -
Mch3g1454 571 Pfam Histidine phosphatase superfamily (branch 1) 76 269 IPR013078 -
Mch3g1454 571 SUPERFAMILY Phosphoglycerate mutase-like 74 271 IPR029033 -
Mch3g1454 571 SMART ring_2 473 513 IPR001841 -
Mch3g1454 571 MobiDBLite consensus disorder prediction 529 571 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1454 Mch-Chr3:16857051 Mch5g0473 Mch-Chr5:3192583 9.50E-11 dispersed
Mch3g1454 Mch-Chr3:16857051 Mch6g0156 Mch-Chr6:1047043 7.88E-157 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1454 K16284 - csv:101222360 510.375