Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1471 ATGGATTTTCCTTTACTTTTCCTCCTCTTCATCTCCCTTCCCTTCTCCTCCTCCGTCGAGTCCAAACTTACCGTCGGTTACTACCAAAAGACGTGCCCCGACTTTGAGAAGATCGTTCGCGACACCGTCACCAATAAGCAAATCACCAGCCCCGTCACCGCCGCGGGCACCCTCCGTCTCTTCTTCCACGACTGCTTTGTTGATGGATGCGATGCCTCTATCCTCATCTCCTCTAACTCCTTCAACAAGGCCGAGCGCGAGGCCGACATTAACCACTCCCTCTCCGGAGATGCCTTCGATGTCGTCGTCCATGCCAAGACCAACCTCGAGCTCGCCTGCCCTGGCATCGTGTCTTGTTCTGACATTCTAGCACAGGCGACACGGGACCTGGTAGTGATGGTCGGGGGACCGTTTTACAACGTGCGATTGGGCCGAAAAGACGGGCTAATCTCGAAGTTAGAAAACGTGGGACCAAACCTGCCATTGGTGCATCAATCATTGGACGAGTTAATAAAACTGTTCGAATCAAAAGGGTTCACCGTCCAAGAAATGGTGGCGCTCTCCGGCGGCCACACCATCGGATTCTCTCACTGCAAGGAGTTCGCCGACCGCCTCTTCAACTTCAGCGCCACGTCACCAACTGACCCTGACATCTACCCTAAATTCGCGGACAAACTGAAGACAATGTGCGCCAACTACAAGACCGACACTGCCATGTCAGCATTCAATGACGTCATGACGCCGGGGAAATTCGACAACATGTACTATCAGAACCTGCCACGTGGCTTGGGGCTATTGGCCACGGACAACGTGCTGAGGAAGGACCCGAGGACGAAGCAGTTCGCGGAGATGTACGCCGTTAACCAGACAGCGTTTTTCCACGACTTCGCACACGCCATGGAGAAGCTTAGCGTTCACGGCGTTAAGACGGGCCGGAAGGGGGAGGTCCGACGAAGGTGTGACGTGTTCAATTCCATTCAGACATAA 987 54.1 MDFPLLFLLFISLPFSSSVESKLTVGYYQKTCPDFEKIVRDTVTNKQITSPVTAAGTLRLFFHDCFVDGCDASILISSNSFNKAEREADINHSLSGDAFDVVVHAKTNLELACPGIVSCSDILAQATRDLVVMVGGPFYNVRLGRKDGLISKLENVGPNLPLVHQSLDELIKLFESKGFTVQEMVALSGGHTIGFSHCKEFADRLFNFSATSPTDPDIYPKFADKLKTMCANYKTDTAMSAFNDVMTPGKFDNMYYQNLPRGLGLLATDNVLRKDPRTKQFAEMYAVNQTAFFHDFAHAMEKLSVHGVKTGRKGEVRRRCDVFNSIQT 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16947625 16949409 + MC03g1061 Mch3g1471 684374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1471 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Mch3g1471 328 PRINTS Plant peroxidase signature 32 51 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g1471 328 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g1471 328 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g1471 328 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g1471 328 PRINTS Plant peroxidase signature 56 76 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g1471 328 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g1471 328 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g1471 328 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g1471 328 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g1471 328 Pfam Peroxidase 39 287 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g1471 328 ProSiteProfiles Plant heme peroxidase family profile. 22 324 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g1471 328 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g1471 328 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g1471 328 PRINTS Haem peroxidase superfamily signature 54 68 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g1471 328 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g1471 328 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g1471 328 FunFam Peroxidase 161 303 - -
Mch3g1471 328 PANTHER - 10 324 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g1471 328 ProSitePatterns Peroxidases active site signature. 54 65 IPR019794 GO:0004601(InterPro)
Mch3g1471 328 Gene3D Peroxidase, domain 2 161 303 - -
Mch3g1471 328 SUPERFAMILY Heme-dependent peroxidases 23 324 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g1471 328 FunFam Peroxidase 26 170 - -
Mch3g1471 328 CDD secretory_peroxidase 22 323 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Mch3g1471 328 Gene3D - 26 324 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1101 Mch-Chr3:14427638 Mch3g1471 Mch-Chr3:16947625 1.87E-88 dispersed
Mch3g1471 Mch-Chr3:16947625 Mch4g2246 Mch-Chr4:23988966 4.61E-136 dispersed
Mch3g1471 Mch-Chr3:16947625 Mch6g0177 Mch-Chr6:1189685 8.45E-149 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1471 K00430 - csv:101220163 556.599