Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1473 AATCACAGGCTCAAACTTTCGCTCTTTCACCACAGATCTCCATCAGAATCCAAGCCCGGACGCCCCAAAGAATATCCCCAGGAGTGCCTGTGCCCGATTTCCAACTCATTAATGGCGGACCCAGTTGTGGTCTCCTCTGGCCACACCTTCGACCGCCTCTGCGTCCAAGTATGTCAAGATTTGGGGTTCTTGCCTAAGCTTGAAGATGGGTCAACCCCCGATTTCTCCTCGGTTATTACCAACAGAAACGTGAGATTCACCATTCTCAAGTGGTGCGATAACAACGGAATTGAACACCCGCGAGAGCCCGATTACAGGTCCATTGAGCTCATTGTTCGCCAGTTAATGGAGAAGGAGAGACGAGAGAATCGATTCGAGGTTTCCGATAGCGAGCTGTTGAGGGGCGTGGCCGATAAACCGCAGGGGGTTTTGAATCACGCCACGACGGAGGTGGGTCTCCGCCGATTACACCTCAACTCGCCGCCGCAGGGGGAGGAGATCGTCCGGGAGAGTACTCTTCTGCCCTTCAAAACCCAGCCCTCTTGTTATGCCTCTTCCTCTTCCAATGAAAGCTTCGAAAAAGTGCCCAATCACCGCGGAGAATCAAATTCCCCAAACTCCGGAGAAGAATCGCGACTCATCTCGAAATTCACGAGCGCCGAACCATTCGAGCAAGAAGACGGAGTAGTTTCCTTAAGAAGAATGACGAAATCCGACGAATCGATTAGGGTTTCGCTCTGTACAAAAGAGTTACTCGCCGCCCTCCTTCCTCTGGTTTCCTCCCGATCGTCCAATGTACAGATCAACGCTGTAGCTTCCGTGGTCAATCTCTCCCTCGATAAATCGAACAAACTGAAGATCGTACGGGCCGGATTCGTTCCGCCATTAATCGACGTTTTGGACAGTGGATTCGACGAACCACAGGAGCACGCCGCCGGTGCCCTGTTCAGCCTATCATTAGACGACGAGAACAAAATGGCGATAGGAATTCTCGGCGCGTTACCGGTACTGATGAACACGGTCCGATCCGACAGCGAGCGGACGAGGCACGACTCAGCCCTCTGTTTGTACCATTTAACTTTAAACCCTAGCAACCGAGTCAAACTCGTGAAACTCGGCGCCGTCCCAGTACTGCTATCGTTGGCGAAATTGGAAGACTCGGCTAGCCGTATACTGCTGATCCTGTGCAATATCGCGGTCTCCGTCGACGGAAGATCGGCAATGCTGGACGCGAACGCGGTGGGTTGCTTGGTGGGGATTCTGAAGGAGAAGACGATGGATTCCGAGTCGACTCGGGAGAATTGCGTGGTGGCGCTGCACGCGCTGAGTCAGGGCGGGTTCCGATTCAGAGGACTGGCGAAGGAGGCCGGCGCGGTGGAGGTTCTGAGAGAGATTGAAGAGAGGGGAAGCGAGAGGGCGAGGGAGAAGGCCAAGAGGATTTTGCAGATGATGAGG 1455 53.81 NHRLKLSLFHHRSPSESKPGRPKEYPQECLCPISNSLMADPVVVSSGHTFDRLCVQVCQDLGFLPKLEDGSTPDFSSVITNRNVRFTILKWCDNNGIEHPREPDYRSIELIVRQLMEKERRENRFEVSDSELLRGVADKPQGVLNHATTEVGLRRLHLNSPPQGEEIVRESTLLPFKTQPSCYASSSSNESFEKVPNHRGESNSPNSGEESRLISKFTSAEPFEQEDGVVSLRRMTKSDESIRVSLCTKELLAALLPLVSSRSSNVQINAVASVVNLSLDKSNKLKIVRAGFVPPLIDVLDSGFDEPQEHAAGALFSLSLDDENKMAIGILGALPVLMNTVRSDSERTRHDSALCLYHLTLNPSNRVKLVKLGAVPVLLSLAKLEDSASRILLILCNIAVSVDGRSAMLDANAVGCLVGILKEKTMDSESTRENCVVALHALSQGGFRFRGLAKEAGAVEVLREIEERGSERAREKAKRILQMMR 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16955375 16956829 - MC03g1063 Mch3g1473 684376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1473 485 SUPERFAMILY RING/U-box 15 100 - -
Mch3g1473 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 99 IPR013083 -
Mch3g1473 485 SMART Ubox_2 28 91 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch3g1473 485 Pfam Armadillo/beta-catenin-like repeat 282 319 IPR000225 GO:0005515(InterPro)
Mch3g1473 485 Gene3D - 212 325 IPR011989 -
Mch3g1473 485 SMART arm_5 321 361 IPR000225 GO:0005515(InterPro)
Mch3g1473 485 SMART arm_5 280 320 IPR000225 GO:0005515(InterPro)
Mch3g1473 485 SMART arm_5 401 444 IPR000225 GO:0005515(InterPro)
Mch3g1473 485 SMART arm_5 362 400 IPR000225 GO:0005515(InterPro)
Mch3g1473 485 PANTHER U BOX DOMAIN-CONTAINING 18 485 - -
Mch3g1473 485 Gene3D - 326 484 IPR011989 -
Mch3g1473 485 SUPERFAMILY ARM repeat 213 484 IPR016024 -
Mch3g1473 485 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 250 292 IPR000225 GO:0005515(InterPro)
Mch3g1473 485 ProSiteProfiles U-box domain profile. 24 98 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch3g1473 485 MobiDBLite consensus disorder prediction 179 213 - -
Mch3g1473 485 Pfam U-box domain 26 58 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch3g1473 485 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 291 328 IPR000225 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1473 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1473 Mch-Chr3:16955375 Mch9g2354 Mch-Chr9:23503244 2.83E-09 dispersed
Mch3g1473 Mch-Chr3:16955375 Mch4g2245 Mch-Chr4:23988548 7.77E-100 wgd
Mch3g1473 Mch-Chr3:16955375 Mch6g0178 Mch-Chr6:1199455 1.52E-62 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g2434 . 1 985 U-box Gene Family AT5G15400 76.4 0.0e+00 1507.7
Mch2g1291 . 196 838 U-box Gene Family AT2G23140 65.6 2.0e-121 433.3
Mch8g0100 . 1 769 U-box Gene Family AT1G24330 60.8 1.8e-249 859.0
Mch9g2354 . 1 582 U-box Gene Family AT1G24330 65.4 7.4e-211 730.7
Mch8g0100 . 1 768 U-box Gene Family AT1G67530 60.2 1.0e-247 853.2
Mch9g2354 . 1 582 U-box Gene Family AT1G67530 64.8 3.3e-206 715.3
Mch1g1805 . 1 362 U-box Gene Family AT4G21350 62.6 1.7e-120 429.5
Mch6g2246 . 4 273 U-box Gene Family AT3G07360 61.0 4.9e-71 265.0
Mch9g1301 . 250 447 U-box Gene Family AT1G71020 68.5 1.4e-74 277.3
Mch4g1391 . 702 901 U-box Gene Family AT1G71020 54.0 5.5e-55 212.2
Mch3g0294 . 258 427 U-box Gene Family AT1G71020 57.2 2.5e-47 186.8
Mch2g0908 . 257 427 U-box Gene Family AT1G71020 54.2 2.0e-44 177.2
Mch9g1301 . 17 651 U-box Gene Family AT1G23030 57.1 1.8e-111 400.2
Mch2g0908 . 94 637 U-box Gene Family AT2G28830 52.2 9.5e-102 367.9
Mch3g0294 . 91 638 U-box Gene Family AT2G28830 58.8 6.2e-101 365.2
Mch3g0294 . 1 643 U-box Gene Family AT3G46510 68.0 6.9e-165 577.8
Mch2g0908 . 9 637 U-box Gene Family AT3G46510 67.3 6.2e-158 554.7
Mch2g0908 . 13 630 U-box Gene Family AT3G54850 56.4 1.8e-109 393.7
Mch3g0294 . 8 631 U-box Gene Family AT3G54850 54.4 1.1e-100 364.4
Mch9g1807 . 1 279 U-box Gene Family AT3G54850 79.9 9.2e-50 195.3
Mch2g0424 . 173 724 U-box Gene Family AT5G42340 63.4 2.5e-114 409.8
Mch3g1054 . 1 712 U-box Gene Family AT1G29340 64.7 1.8e-251 865.5
Mch8g2291 . 27 442 U-box Gene Family AT5G37490 51.4 5.8e-112 401.4
Mch1g0580 . 13 414 U-box Gene Family AT3G52450 53.3 1.4e-118 423.3
Mch1g0580 . 13 414 U-box Gene Family AT2G35930 55.2 2.7e-119 425.6
Mch2g0219 . 7 406 U-box Gene Family AT2G35930 51.4 2.4e-115 412.5
Mch10g0491 . 1 415 U-box Gene Family AT3G19380 63.9 2.4e-147 518.8
Mch10g0491 . 1 415 U-box Gene Family AT1G49780 64.8 3.9e-153 538.1
Mch11g0376 . 5 455 U-box Gene Family AT3G49810 64.6 2.7e-157 552.0
Mch8g0620 . 6 446 U-box Gene Family AT3G49810 62.4 2.0e-152 535.8
Mch11g0376 . 5 455 U-box Gene Family AT5G65920 63.6 3.4e-152 535.0
Mch8g0620 . 6 446 U-box Gene Family AT5G65920 64.6 1.1e-150 530.0
Mch10g0145 . 208 705 U-box Gene Family AT3G49060 50.2 4.9e-138 488.8
Mch5g0393 . 1 880 U-box Gene Family AT2G45910 52.8 1.1e-231 800.0
Mch7g0670 . 1 300 U-box Gene Family AT2G45910 62.8 3.0e-109 393.3
Mch7g0671 . 1 142 U-box Gene Family AT2G45910 57.0 6.4e-43 172.9
Mch8g0371 . 227 515 U-box Gene Family AT2G19410 56.4 4.2e-92 336.3
Mch6g2652 . 25 811 U-box Gene Family AT4G25160 53.6 5.5e-228 787.7
Mch8g0371 . 214 520 U-box Gene Family AT4G25160 53.4 5.6e-87 319.3
Mch6g0178 . 1 288 U-box Gene Family AT5G65200 55.7 7.8e-53 205.3
Mch4g2245 . 12 551 U-box Gene Family AT5G40140 53.6 2.8e-95 346.3
Mch3g1473 . 24 485 U-box Gene Family AT5G40140 52.4 4.2e-59 226.1
Mch6g0178 . 1 283 U-box Gene Family AT5G62560 59.9 2.1e-50 197.2
Mch8g0100 . 1 772 U-box Gene Family AT1G27910 64.0 3.0e-273 937.9
Mch9g2354 . 1 582 U-box Gene Family AT1G27910 64.3 9.3e-206 713.8
Mch1g1286 . 1 592 U-box Gene Family AT5G67530 74.7 1.4e-262 902.1
Mch5g0327 . 3 162 U-box Gene Family AT5G67530 51.3 4.6e-43 172.9
Mch5g1593 . 12 150 U-box Gene Family AT5G67530 50.4 9.9e-38 155.2
Mch8g0371 . 217 513 U-box Gene Family AT5G61560 52.8 3.8e-85 313.2
Mch6g2652 . 26 813 U-box Gene Family AT5G61550 50.9 4.4e-225 778.1
Mch8g0371 . 227 514 U-box Gene Family AT5G61550 54.7 1.1e-85 315.1
Mch8g0371 . 227 514 U-box Gene Family AT5G51270 51.5 9.8e-81 298.5
Mch5g0126 . 1 516 U-box Gene Family AT1G04510 74.2 3.4e-223 771.2
Mch5g0126 . 1 485 U-box Gene Family AT2G33340 73.5 6.7e-210 726.9
Mch6g2247 . 10 278 U-box Gene Family AT3G07370 65.4 1.2e-99 359.8
Mch8g2434 . 1 985 U-box Gene Family AT5G15400 76.4 0.0e+00 1507.7
Mch2g1291 . 196 838 U-box Gene Family AT2G23140 65.6 2.0e-121 433.3
Mch8g0100 . 1 769 U-box Gene Family AT1G24330 60.8 1.8e-249 859.0
Mch9g2354 . 1 582 U-box Gene Family AT1G24330 65.4 7.4e-211 730.7
Mch8g0100 . 1 768 U-box Gene Family AT1G67530 60.2 1.0e-247 853.2
Mch9g2354 . 1 582 U-box Gene Family AT1G67530 64.8 3.3e-206 715.3
Mch1g1805 . 1 362 U-box Gene Family AT4G21350 62.6 1.7e-120 429.5
Mch6g2246 . 4 273 U-box Gene Family AT3G07360 61.0 4.9e-71 265.0
Mch9g1301 . 250 447 U-box Gene Family AT1G71020 68.5 1.4e-74 277.3
Mch4g1391 . 702 901 U-box Gene Family AT1G71020 54.0 5.5e-55 212.2
Mch3g0294 . 258 427 U-box Gene Family AT1G71020 57.2 2.5e-47 186.8
Mch2g0908 . 257 427 U-box Gene Family AT1G71020 54.2 2.0e-44 177.2
Mch9g1301 . 17 651 U-box Gene Family AT1G23030 57.1 1.8e-111 400.2
Mch2g0908 . 94 637 U-box Gene Family AT2G28830 52.2 9.5e-102 367.9
Mch3g0294 . 91 638 U-box Gene Family AT2G28830 58.8 6.2e-101 365.2
Mch3g0294 . 1 643 U-box Gene Family AT3G46510 68.0 6.9e-165 577.8
Mch2g0908 . 9 637 U-box Gene Family AT3G46510 67.3 6.2e-158 554.7
Mch2g0908 . 13 630 U-box Gene Family AT3G54850 56.4 1.8e-109 393.7
Mch3g0294 . 8 631 U-box Gene Family AT3G54850 54.4 1.1e-100 364.4
Mch9g1807 . 1 279 U-box Gene Family AT3G54850 79.9 9.2e-50 195.3
Mch2g0424 . 173 724 U-box Gene Family AT5G42340 63.4 2.5e-114 409.8
Mch3g1054 . 1 712 U-box Gene Family AT1G29340 64.7 1.8e-251 865.5
Mch8g2291 . 27 442 U-box Gene Family AT5G37490 51.4 5.8e-112 401.4
Mch1g0580 . 13 414 U-box Gene Family AT3G52450 53.3 1.4e-118 423.3
Mch1g0580 . 13 414 U-box Gene Family AT2G35930 55.2 2.7e-119 425.6
Mch2g0219 . 7 406 U-box Gene Family AT2G35930 51.4 2.4e-115 412.5
Mch10g0491 . 1 415 U-box Gene Family AT3G19380 63.9 2.4e-147 518.8
Mch10g0491 . 1 415 U-box Gene Family AT1G49780 64.8 3.9e-153 538.1
Mch11g0376 . 5 455 U-box Gene Family AT3G49810 64.6 2.7e-157 552.0
Mch8g0620 . 6 446 U-box Gene Family AT3G49810 62.4 2.0e-152 535.8
Mch11g0376 . 5 455 U-box Gene Family AT5G65920 63.6 3.4e-152 535.0
Mch8g0620 . 6 446 U-box Gene Family AT5G65920 64.6 1.1e-150 530.0
Mch10g0145 . 208 705 U-box Gene Family AT3G49060 50.2 4.9e-138 488.8
Mch5g0393 . 1 880 U-box Gene Family AT2G45910 52.8 1.1e-231 800.0
Mch7g0670 . 1 300 U-box Gene Family AT2G45910 62.8 3.0e-109 393.3
Mch7g0671 . 1 142 U-box Gene Family AT2G45910 57.0 6.4e-43 172.9
Mch8g0371 . 227 515 U-box Gene Family AT2G19410 56.4 4.2e-92 336.3
Mch6g2652 . 25 811 U-box Gene Family AT4G25160 53.6 5.5e-228 787.7
Mch8g0371 . 214 520 U-box Gene Family AT4G25160 53.4 5.6e-87 319.3
Mch6g0178 . 1 288 U-box Gene Family AT5G65200 55.7 7.8e-53 205.3
Mch4g2245 . 12 551 U-box Gene Family AT5G40140 53.6 2.8e-95 346.3
Mch3g1473 . 24 485 U-box Gene Family AT5G40140 52.4 4.2e-59 226.1
Mch6g0178 . 1 283 U-box Gene Family AT5G62560 59.9 2.1e-50 197.2
Mch8g0100 . 1 772 U-box Gene Family AT1G27910 64.0 3.0e-273 937.9
Mch9g2354 . 1 582 U-box Gene Family AT1G27910 64.3 9.3e-206 713.8
Mch1g1286 . 1 592 U-box Gene Family AT5G67530 74.7 1.4e-262 902.1
Mch5g0327 . 3 162 U-box Gene Family AT5G67530 51.3 4.6e-43 172.9
Mch5g1593 . 12 150 U-box Gene Family AT5G67530 50.4 9.9e-38 155.2
Mch8g0371 . 217 513 U-box Gene Family AT5G61560 52.8 3.8e-85 313.2
Mch6g2652 . 26 813 U-box Gene Family AT5G61550 50.9 4.4e-225 778.1
Mch8g0371 . 227 514 U-box Gene Family AT5G61550 54.7 1.1e-85 315.1
Mch8g0371 . 227 514 U-box Gene Family AT5G51270 51.5 9.8e-81 298.5
Mch5g0126 . 1 516 U-box Gene Family AT1G04510 74.2 3.4e-223 771.2
Mch5g0126 . 1 485 U-box Gene Family AT2G33340 73.5 6.7e-210 726.9
Mch6g2247 . 10 278 U-box Gene Family AT3G07370 65.4 1.2e-99 359.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008896 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 0 33