Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1473 AATCACAGGCTCAAACTTTCGCTCTTTCACCACAGATCTCCATCAGAATCCAAGCCCGGACGCCCCAAAGAATATCCCCAGGAGTGCCTGTGCCCGATTTCCAACTCATTAATGGCGGACCCAGTTGTGGTCTCCTCTGGCCACACCTTCGACCGCCTCTGCGTCCAAGTATGTCAAGATTTGGGGTTCTTGCCTAAGCTTGAAGATGGGTCAACCCCCGATTTCTCCTCGGTTATTACCAACAGAAACGTGAGATTCACCATTCTCAAGTGGTGCGATAACAACGGAATTGAACACCCGCGAGAGCCCGATTACAGGTCCATTGAGCTCATTGTTCGCCAGTTAATGGAGAAGGAGAGACGAGAGAATCGATTCGAGGTTTCCGATAGCGAGCTGTTGAGGGGCGTGGCCGATAAACCGCAGGGGGTTTTGAATCACGCCACGACGGAGGTGGGTCTCCGCCGATTACACCTCAACTCGCCGCCGCAGGGGGAGGAGATCGTCCGGGAGAGTACTCTTCTGCCCTTCAAAACCCAGCCCTCTTGTTATGCCTCTTCCTCTTCCAATGAAAGCTTCGAAAAAGTGCCCAATCACCGCGGAGAATCAAATTCCCCAAACTCCGGAGAAGAATCGCGACTCATCTCGAAATTCACGAGCGCCGAACCATTCGAGCAAGAAGACGGAGTAGTTTCCTTAAGAAGAATGACGAAATCCGACGAATCGATTAGGGTTTCGCTCTGTACAAAAGAGTTACTCGCCGCCCTCCTTCCTCTGGTTTCCTCCCGATCGTCCAATGTACAGATCAACGCTGTAGCTTCCGTGGTCAATCTCTCCCTCGATAAATCGAACAAACTGAAGATCGTACGGGCCGGATTCGTTCCGCCATTAATCGACGTTTTGGACAGTGGATTCGACGAACCACAGGAGCACGCCGCCGGTGCCCTGTTCAGCCTATCATTAGACGACGAGAACAAAATGGCGATAGGAATTCTCGGCGCGTTACCGGTACTGATGAACACGGTCCGATCCGACAGCGAGCGGACGAGGCACGACTCAGCCCTCTGTTTGTACCATTTAACTTTAAACCCTAGCAACCGAGTCAAACTCGTGAAACTCGGCGCCGTCCCAGTACTGCTATCGTTGGCGAAATTGGAAGACTCGGCTAGCCGTATACTGCTGATCCTGTGCAATATCGCGGTCTCCGTCGACGGAAGATCGGCAATGCTGGACGCGAACGCGGTGGGTTGCTTGGTGGGGATTCTGAAGGAGAAGACGATGGATTCCGAGTCGACTCGGGAGAATTGCGTGGTGGCGCTGCACGCGCTGAGTCAGGGCGGGTTCCGATTCAGAGGACTGGCGAAGGAGGCCGGCGCGGTGGAGGTTCTGAGAGAGATTGAAGAGAGGGGAAGCGAGAGGGCGAGGGAGAAGGCCAAGAGGATTTTGCAGATGATGAGG 1455 53.81 NHRLKLSLFHHRSPSESKPGRPKEYPQECLCPISNSLMADPVVVSSGHTFDRLCVQVCQDLGFLPKLEDGSTPDFSSVITNRNVRFTILKWCDNNGIEHPREPDYRSIELIVRQLMEKERRENRFEVSDSELLRGVADKPQGVLNHATTEVGLRRLHLNSPPQGEEIVRESTLLPFKTQPSCYASSSSNESFEKVPNHRGESNSPNSGEESRLISKFTSAEPFEQEDGVVSLRRMTKSDESIRVSLCTKELLAALLPLVSSRSSNVQINAVASVVNLSLDKSNKLKIVRAGFVPPLIDVLDSGFDEPQEHAAGALFSLSLDDENKMAIGILGALPVLMNTVRSDSERTRHDSALCLYHLTLNPSNRVKLVKLGAVPVLLSLAKLEDSASRILLILCNIAVSVDGRSAMLDANAVGCLVGILKEKTMDSESTRENCVVALHALSQGGFRFRGLAKEAGAVEVLREIEERGSERAREKAKRILQMMR 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16955375 16956829 - MC03g1063 Mch3g1473 684376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1473 485 SUPERFAMILY RING/U-box 15 100 - -
Mch3g1473 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 99 IPR013083 -
Mch3g1473 485 SMART Ubox_2 28 91 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch3g1473 485 Pfam Armadillo/beta-catenin-like repeat 282 319 IPR000225 GO:0005515(InterPro)
Mch3g1473 485 Gene3D - 212 325 IPR011989 -
Mch3g1473 485 SMART arm_5 321 361 IPR000225 GO:0005515(InterPro)
Mch3g1473 485 SMART arm_5 280 320 IPR000225 GO:0005515(InterPro)
Mch3g1473 485 SMART arm_5 401 444 IPR000225 GO:0005515(InterPro)
Mch3g1473 485 SMART arm_5 362 400 IPR000225 GO:0005515(InterPro)
Mch3g1473 485 PANTHER U BOX DOMAIN-CONTAINING 18 485 - -
Mch3g1473 485 Gene3D - 326 484 IPR011989 -
Mch3g1473 485 SUPERFAMILY ARM repeat 213 484 IPR016024 -
Mch3g1473 485 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 250 292 IPR000225 GO:0005515(InterPro)
Mch3g1473 485 ProSiteProfiles U-box domain profile. 24 98 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch3g1473 485 MobiDBLite consensus disorder prediction 179 213 - -
Mch3g1473 485 Pfam U-box domain 26 58 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch3g1473 485 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 291 328 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1473 Mch-Chr3:16955375 Mch9g2354 Mch-Chr9:23503244 2.83E-09 dispersed
Mch3g1473 Mch-Chr3:16955375 Mch4g2245 Mch-Chr4:23988548 7.77E-100 wgd
Mch3g1473 Mch-Chr3:16955375 Mch6g0178 Mch-Chr6:1199455 1.52E-62 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1473 - - - 0.0