Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1476 ATGGCGGCTATGCCCTCCTCTTCCGCCTTGCCGGATTCTTCTTCCTCCAGGCACCATACTTACAGTCGGAAGCAGAAATCCCTCGGTCTTCTCTGCTCCAATTTTCTGTGCTTGTATAACCACGATGGAGTCCACTCGATAGGGCTTGATGATGCCGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATAGTGAATGTTTTGGAGAGCGTCGGGGTTCTGTCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGTTTTGGGGCAATCCCTAAGGCGTTACAAGATCTCAAGGAAGAAGGCTTGAAGGAGAATTGCAGTGCATCTGATGGTAACGATTATGCAAAAGTGTCGGATGATGAAGACGATGATGAAAGATTTTCTAACCCAACTGGAAGCCAGAACTCAACTGCGGCTGTGCCCAAATCTTCATCATCGTTAAAAACCGATAATAGAAGGGAAAAGTCATTGGCGCTCCTGACGCAAAATTTTGTCAAGCTCTTTATTTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCTGCGAGGCTCTTATTAGGAGATGGCCACAATTCATCGATAATGAGAACAAAGGTAAGGCGGCTATATGACATTGCAAATGTGTTGTCTTCCATGAATCTAATTGAAAAGACCCATACAACAGACACAAGAAAGCCTGCGTTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCTACCGTCCTCCCAGAGTCCAGAAAAAGGGCATTTGGAACTGATGTAACAAATGTCAGTTATAAGAAGACTAAGGCTGAAAACTCAACCACCCATGAGAGTTTAACTCATTGCCTTAACATGCAAAAGCAAGTGCAGTGTGAGAATTCTTCGCAAGAGGGTAGCCAAAACAGCCAGGATCAGGAATGTGAACGAACTTCCAAGAGCTATCAATTTGGACCATTTGCTCCAGTAACGGTAGCTAAAGTTGGCATCTCAAACAACAATGTGAAGCGGACTCATGACTGGGAAAGCCTCTCCTCGACGTTCTGCCCTCAGTATCACAATCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGAAGAAACCTATACAAATTTCTTGA 1143 44.79 MAAMPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLCLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLKENCSASDGNDYAKVSDDEDDDERFSNPTGSQNSTAAVPKSSSSLKTDNRREKSLALLTQNFVKLFICSHVNMISLDEAARLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTVLPESRKRAFGTDVTNVSYKKTKAENSTTHESLTHCLNMQKQVQCENSSQEGSQNSQDQECERTSKSYQFGPFAPVTVAKVGISNNNVKRTHDWESLSSTFCPQYHNQALKELFSHYVEAWKSWYSEAVKKPIQIS 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16986464 16989596 - MC03g1066 Mch3g1476 684379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1476 380 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
Mch3g1476 380 Gene3D - 18 91 IPR036388 -
Mch3g1476 380 Gene3D - 149 236 IPR036388 -
Mch3g1476 380 PANTHER TRANSCRIPTION FACTOR E2F 7 353 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Mch3g1476 380 MobiDBLite consensus disorder prediction 131 148 - -
Mch3g1476 380 MobiDBLite consensus disorder prediction 106 153 - -
Mch3g1476 380 FunFam E2F transcription factor-like E2FE 149 236 - -
Mch3g1476 380 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Mch3g1476 380 Pfam E2F/DP family winged-helix DNA-binding domain 155 234 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Mch3g1476 380 SMART E2F_TDP_2 154 234 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Mch3g1476 380 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Mch3g1476 380 FunFam E2F transcription factor 8 18 90 - -
Mch3g1476 380 SUPERFAMILY Winged helix DNA-binding domain 156 235 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1476 K09391 - - csv:101219210 697.967
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0971 Mch-Chr1:12866209 Mch3g1476 Mch-Chr3:16986464 1.13E-09 dispersed
Mch2g0227 Mch-Chr2:1725575 Mch3g1476 Mch-Chr3:16986464 8.74E-10 dispersed
Mch3g1476 Mch-Chr3:16986464 Mch8g0842 Mch-Chr8:6009724 6.02E-07 dispersed
Mch3g1476 Mch-Chr3:16986464 Mch6g0184 Mch-Chr6:1232048 8.35E-122 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch3g1476 . 3 375 E2F-DP Transcription Factor Family AT3G48160 55.1 8.3e-105 377.5
Mch10g0326 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 5.9e-60 228.0
Mch2g0227 . 21 461 E2F-DP Transcription Factor Family AT2G36010 55.2 1.3e-120 430.3
Mch1g0971 . 387 764 E2F-DP Transcription Factor Family AT2G36010 57.6 2.4e-106 382.9
Mch2g0227 . 24 463 E2F-DP Transcription Factor Family AT5G22220 56.2 8.7e-114 407.5
Mch1g0971 . 386 780 E2F-DP Transcription Factor Family AT5G22220 50.9 5.7e-89 325.1
Mch8g0842 . 153 406 E2F-DP Transcription Factor Family AT1G47870 54.7 8.8e-67 251.1
Mch2g0227 . 139 416 E2F-DP Transcription Factor Family AT1G47870 51.1 1.1e-61 234.2
Mch10g0326 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 5.9e-60 228.0
Mch2g0227 . 24 463 E2F-DP Transcription Factor Family AT5G22220 56.2 8.7e-114 407.5
Mch1g0971 . 386 780 E2F-DP Transcription Factor Family AT5G22220 50.9 5.7e-89 325.1
Mch2g0227 . 21 461 E2F-DP Transcription Factor Family AT2G36010 55.2 1.3e-120 430.3
Mch1g0971 . 387 764 E2F-DP Transcription Factor Family AT2G36010 57.6 2.4e-106 382.9
Mch8g0842 . 153 406 E2F-DP Transcription Factor Family AT1G47870 54.7 8.8e-67 251.1
Mch2g0227 . 139 416 E2F-DP Transcription Factor Family AT1G47870 51.1 1.1e-61 234.2
Mch3g1476 . 3 375 E2F-DP Transcription Factor Family AT3G48160 55.1 8.3e-105 377.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43060 PF02319 E2F_TDP 5.20E-20 CL0123 Mch TF