Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1476 ATGGCGGCTATGCCCTCCTCTTCCGCCTTGCCGGATTCTTCTTCCTCCAGGCACCATACTTACAGTCGGAAGCAGAAATCCCTCGGTCTTCTCTGCTCCAATTTTCTGTGCTTGTATAACCACGATGGAGTCCACTCGATAGGGCTTGATGATGCCGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATAGTGAATGTTTTGGAGAGCGTCGGGGTTCTGTCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGTTTTGGGGCAATCCCTAAGGCGTTACAAGATCTCAAGGAAGAAGGCTTGAAGGAGAATTGCAGTGCATCTGATGGTAACGATTATGCAAAAGTGTCGGATGATGAAGACGATGATGAAAGATTTTCTAACCCAACTGGAAGCCAGAACTCAACTGCGGCTGTGCCCAAATCTTCATCATCGTTAAAAACCGATAATAGAAGGGAAAAGTCATTGGCGCTCCTGACGCAAAATTTTGTCAAGCTCTTTATTTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCTGCGAGGCTCTTATTAGGAGATGGCCACAATTCATCGATAATGAGAACAAAGGTAAGGCGGCTATATGACATTGCAAATGTGTTGTCTTCCATGAATCTAATTGAAAAGACCCATACAACAGACACAAGAAAGCCTGCGTTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCTACCGTCCTCCCAGAGTCCAGAAAAAGGGCATTTGGAACTGATGTAACAAATGTCAGTTATAAGAAGACTAAGGCTGAAAACTCAACCACCCATGAGAGTTTAACTCATTGCCTTAACATGCAAAAGCAAGTGCAGTGTGAGAATTCTTCGCAAGAGGGTAGCCAAAACAGCCAGGATCAGGAATGTGAACGAACTTCCAAGAGCTATCAATTTGGACCATTTGCTCCAGTAACGGTAGCTAAAGTTGGCATCTCAAACAACAATGTGAAGCGGACTCATGACTGGGAAAGCCTCTCCTCGACGTTCTGCCCTCAGTATCACAATCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGAAGAAACCTATACAAATTTCTTGA 1143 44.79 MAAMPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLCLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLKENCSASDGNDYAKVSDDEDDDERFSNPTGSQNSTAAVPKSSSSLKTDNRREKSLALLTQNFVKLFICSHVNMISLDEAARLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTVLPESRKRAFGTDVTNVSYKKTKAENSTTHESLTHCLNMQKQVQCENSSQEGSQNSQDQECERTSKSYQFGPFAPVTVAKVGISNNNVKRTHDWESLSSTFCPQYHNQALKELFSHYVEAWKSWYSEAVKKPIQIS 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16986464 16989596 - MC03g1066 Mch3g1476 684379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1476 380 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
Mch3g1476 380 Gene3D - 18 91 IPR036388 -
Mch3g1476 380 Gene3D - 149 236 IPR036388 -
Mch3g1476 380 PANTHER TRANSCRIPTION FACTOR E2F 7 353 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Mch3g1476 380 MobiDBLite consensus disorder prediction 131 148 - -
Mch3g1476 380 MobiDBLite consensus disorder prediction 106 153 - -
Mch3g1476 380 FunFam E2F transcription factor-like E2FE 149 236 - -
Mch3g1476 380 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Mch3g1476 380 Pfam E2F/DP family winged-helix DNA-binding domain 155 234 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Mch3g1476 380 SMART E2F_TDP_2 154 234 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Mch3g1476 380 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Mch3g1476 380 FunFam E2F transcription factor 8 18 90 - -
Mch3g1476 380 SUPERFAMILY Winged helix DNA-binding domain 156 235 IPR036390 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0971 Mch-Chr1:12866209 Mch3g1476 Mch-Chr3:16986464 1.13E-09 dispersed
Mch2g0227 Mch-Chr2:1725575 Mch3g1476 Mch-Chr3:16986464 8.74E-10 dispersed
Mch3g1476 Mch-Chr3:16986464 Mch8g0842 Mch-Chr8:6009724 6.02E-07 dispersed
Mch3g1476 Mch-Chr3:16986464 Mch6g0184 Mch-Chr6:1232048 8.35E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43060 PF02319 E2F_TDP 5.20E-20 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1476 K09391 - csv:101219210 697.967