Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch3g1476 | ATGGCGGCTATGCCCTCCTCTTCCGCCTTGCCGGATTCTTCTTCCTCCAGGCACCATACTTACAGTCGGAAGCAGAAATCCCTCGGTCTTCTCTGCTCCAATTTTCTGTGCTTGTATAACCACGATGGAGTCCACTCGATAGGGCTTGATGATGCCGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATAGTGAATGTTTTGGAGAGCGTCGGGGTTCTGTCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGTTTTGGGGCAATCCCTAAGGCGTTACAAGATCTCAAGGAAGAAGGCTTGAAGGAGAATTGCAGTGCATCTGATGGTAACGATTATGCAAAAGTGTCGGATGATGAAGACGATGATGAAAGATTTTCTAACCCAACTGGAAGCCAGAACTCAACTGCGGCTGTGCCCAAATCTTCATCATCGTTAAAAACCGATAATAGAAGGGAAAAGTCATTGGCGCTCCTGACGCAAAATTTTGTCAAGCTCTTTATTTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCTGCGAGGCTCTTATTAGGAGATGGCCACAATTCATCGATAATGAGAACAAAGGTAAGGCGGCTATATGACATTGCAAATGTGTTGTCTTCCATGAATCTAATTGAAAAGACCCATACAACAGACACAAGAAAGCCTGCGTTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCTACCGTCCTCCCAGAGTCCAGAAAAAGGGCATTTGGAACTGATGTAACAAATGTCAGTTATAAGAAGACTAAGGCTGAAAACTCAACCACCCATGAGAGTTTAACTCATTGCCTTAACATGCAAAAGCAAGTGCAGTGTGAGAATTCTTCGCAAGAGGGTAGCCAAAACAGCCAGGATCAGGAATGTGAACGAACTTCCAAGAGCTATCAATTTGGACCATTTGCTCCAGTAACGGTAGCTAAAGTTGGCATCTCAAACAACAATGTGAAGCGGACTCATGACTGGGAAAGCCTCTCCTCGACGTTCTGCCCTCAGTATCACAATCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGAAGAAACCTATACAAATTTCTTGA | 1143 | 44.79 | MAAMPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLCLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLKENCSASDGNDYAKVSDDEDDDERFSNPTGSQNSTAAVPKSSSSLKTDNRREKSLALLTQNFVKLFICSHVNMISLDEAARLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTVLPESRKRAFGTDVTNVSYKKTKAENSTTHESLTHCLNMQKQVQCENSSQEGSQNSQDQECERTSKSYQFGPFAPVTVAKVGISNNNVKRTHDWESLSSTFCPQYHNQALKELFSHYVEAWKSWYSEAVKKPIQIS | 380 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 16986464 | 16989596 | - | MC03g1066 | Mch3g1476 | 684379 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch3g1476 | 380 | SUPERFAMILY | Winged helix DNA-binding domain | 22 | 86 | IPR036390 | - | |
Mch3g1476 | 380 | Gene3D | - | 18 | 91 | IPR036388 | - | |
Mch3g1476 | 380 | Gene3D | - | 149 | 236 | IPR036388 | - | |
Mch3g1476 | 380 | PANTHER | TRANSCRIPTION FACTOR E2F | 7 | 353 | IPR015633 | GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER) | |
Mch3g1476 | 380 | MobiDBLite | consensus disorder prediction | 131 | 148 | - | - | |
Mch3g1476 | 380 | MobiDBLite | consensus disorder prediction | 106 | 153 | - | - | |
Mch3g1476 | 380 | FunFam | E2F transcription factor-like E2FE | 149 | 236 | - | - | |
Mch3g1476 | 380 | Pfam | E2F/DP family winged-helix DNA-binding domain | 24 | 88 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Mch3g1476 | 380 | Pfam | E2F/DP family winged-helix DNA-binding domain | 155 | 234 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Mch3g1476 | 380 | SMART | E2F_TDP_2 | 154 | 234 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Mch3g1476 | 380 | SMART | E2F_TDP_2 | 23 | 88 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Mch3g1476 | 380 | FunFam | E2F transcription factor 8 | 18 | 90 | - | - | |
Mch3g1476 | 380 | SUPERFAMILY | Winged helix DNA-binding domain | 156 | 235 | IPR036390 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch1g0971 | Mch-Chr1:12866209 | Mch3g1476 | Mch-Chr3:16986464 | 1.13E-09 | dispersed | |
Mch2g0227 | Mch-Chr2:1725575 | Mch3g1476 | Mch-Chr3:16986464 | 8.74E-10 | dispersed | |
Mch3g1476 | Mch-Chr3:16986464 | Mch8g0842 | Mch-Chr8:6009724 | 6.02E-07 | dispersed | |
Mch3g1476 | Mch-Chr3:16986464 | Mch6g0184 | Mch-Chr6:1232048 | 8.35E-122 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43060 | PF02319 | E2F_TDP | 5.20E-20 | CL0123 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch3g1476 | K09391 | - | csv:101219210 | 697.967 |