Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1499 ATGGCTGACTACGATCTGACTCCACGAATCGCCCCCAATCTTGATCGTCACCTTGTTTTCCCTCTTCTTGAGTTCCTTCAGGAGAGGCAGCTTTACCCCGATGAGCAGATCCTCAAGGCGAAGATCGAGCTTCTGAACAAGACCAACATGGTTGATTACGCCATGGACATCCACAAGTCGCTGTACCGCACGGACGATGTTCCTCAAGGCATGGGAAATTCTGGGTTTTGGAGGGCGGAAGTGGTCGCCAGGCTTAAGGCTTTGGAGGAGTCTGCGGCGCCACTCGTTACTTTTCTGCAGAATCCGGCGGCTGTTCAGGAACTCAGGGCTGATAAGCAGTATAATCTTCAAATGCTTAATGATCGTTATCAGATTGGTCCGGATCAAATAGAAGCATTATATCAATATGCCAAATTTCAGTTCGAGTGTGGGAACTACTCTGGTGCTGCCGACTATCTTTATCAGTACAGAGCCTTATGTACAAGCAGTGAAAGGAGCCTCAGTGCTCTATGGGGGAAATTGGCTGCTGAGATTTTAATGCAGAATTGGGATATTGCTGTTGAAGAGCTTAATCGTCTAAAGGAAATTATCGACTCTAAGAATTTCTCATCACCTATGAACCAAGTGCAAAGCAGAATATGGCTGATGCATTGGAGCCTCTTCATCTTTTTCAATCATGACAATGGAAGAACTCAGATTATTGACCTGTTTAATCAAGATAAGTATTTAAATGCCATTCAAACCAATGCTCCCCATCTTTTGCGTTATTTGGCCACTGCATTCATTGTTAACAAAAGGCGGAGGCCACAATTCAAAGATTTTATCAAGGTTATTCAGCAAGACCAGTATTCCTACAAGGATCCCATCACAGAGTTCTTGACTTGTGTGTATGTCAATTATGACTTTGATGGGGCACAACGGAAGATGAGGGAGTGTGAAGAAGTTATATTGAATGATCCTTTCCTCGGAAAAAGGCTTGAAGAAGGCAACCTTTCTACTGTTCCTTTGAGAGACGAGTTTTTGGAAAATGCTCGCCTTTTTATCTTTGAGACTTACTGCAGAATACATCAGCGCATTGATATGAGTGTCCTTGCTGAGAAGTTAAACTTAAATTATGAGGAAGCTGAGAGGTGGATTGTTAATCTTGTACGGACCTCAAAGCTTGATGCCAAGATTGATTCAAAAACGGGAGCGGTTATAATGGAACCGAACCAGCCTAATGTGTACGAACATCTGATAGACCACACCAAGTCACTATCTGGGCGTACTTACAAGTTAGTTACTCAACTTCTAGAGCATGCACAGGCTCAAACAGCTAGATAA 1323 43.39 MADYDLTPRIAPNLDRHLVFPLLEFLQERQLYPDEQILKAKIELLNKTNMVDYAMDIHKSLYRTDDVPQGMGNSGFWRAEVVARLKALEESAAPLVTFLQNPAAVQELRADKQYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTSSERSLSALWGKLAAEILMQNWDIAVEELNRLKEIIDSKNFSSPMNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQDQYSYKDPITEFLTCVYVNYDFDGAQRKMRECEEVILNDPFLGKRLEEGNLSTVPLRDEFLENARLFIFETYCRIHQRIDMSVLAEKLNLNYEEAERWIVNLVRTSKLDAKIDSKTGAVIMEPNQPNVYEHLIDHTKSLSGRTYKLVTQLLEHAQAQTAR 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17142410 17146415 + MC03g1089 Mch3g1499 684402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1499 440 CDD eIF3E 4 432 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Mch3g1499 440 Gene3D - 227 436 - -
Mch3g1499 440 SUPERFAMILY TPR-like 123 196 IPR011990 GO:0005515(InterPro)
Mch3g1499 440 Pfam eIF3 subunit 6 N terminal domain 5 140 IPR019010 -
Mch3g1499 440 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 2 432 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Mch3g1499 440 SMART eIF3_N_2 5 140 IPR019010 -
Mch3g1499 440 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 437 IPR016650 GO:0003743(InterPro)|GO:0005634(PANTHER)|GO:0005737(InterPro)|GO:0005852(InterPro)|GO:0005852(PANTHER)|GO:0006413(PANTHER)
Mch3g1499 440 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 335 419 IPR000717 -
Mch3g1499 440 SUPERFAMILY Winged helix DNA-binding domain 336 407 IPR036390 -
Mch3g1499 440 FunFam Eukaryotic translation initiation factor 3 subunit E 231 436 - -
Mch3g1499 440 ProSiteProfiles PCI domain profile. 222 406 IPR000717 -
Mch3g1499 440 PIRSF Transl_init_eIF3e 1 440 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Mch3g1499 440 Pfam PCI domain 309 402 IPR000717 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1499 K03250 - csv:101205199 837.025