Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1516 ATGGGCATGTTGATTTTGATCTTCTCCTCGCTTTTATTATCGACCCTTTTCAGCCCTTGCTCTCTTGCTCTTACTCAAGATGGCCTGACGTTGTTGGAACTTAGAACCGCTTTTAATGATAGTAGAAATCTCCTTGGTGATTGGGAAGCTTCTGATGAGTCTCCCTGCAAGTGGATTGGAATCTCTTGTCACCCCGAGGACCAACGGGTCAGTTCAATTAACTTACCTTACATGCAACTAGGAGGGATTATTTCTCCCAGCATTGGTAAACTCAGTAGATTACAGAGACTGGCACTTCACCAAAATAGCTTACATGGATATATTCCTCATGAAATCGCTAATTGTACTCAGCTCAGAGCCCTGTATTTGAGGTCTAATTATCTCCAAGGTGGCATACCATCGGATATCGGAAGCCTATCTGCCCTTACAATACTGGATTTATCAAGCAATTCGTTGAAGGGTGTTATTCCATCATCCATTGGCCGTCTCTCACTTCTGCGCCTTTTGAATTTGTCCACCAACTTTTTTACTGGGGAAATACCAGATTTTGGAATTCTTAGCACCTTTGGAAGAAATTCGTTCATTGGCAATCTAGATCTCTGTGGTCATCAAATTAACAAGCCCTGCCGAACCTCAATGGGATTCCCTGCAGTGTTGCCTCATGCTGAAAGTGACGAAGCTACTGTTCCTTTGAAAAGGCCTTCACACTATATCAAAGGGGTAATAATTGGTGCAATGTCCACAATGGGTGTTGCACTTATAGTACTTGTTCCATTCTTGTGGATCCGTTGGCTTTCAAAGAAGGAAAGAGCGGCCAAGAAATACACAGAAGTCAAGAAGCAAGTGGTTCATGAATCAAGCACAAAACTCATTACTTTTCATGGTGACCTTCCATACCCATCATGTGAGATCATAGAAAAGCTGGAGTCACTGGATGAAGAAGATGTTGTCGGTTCAGGCGGATTTGGTACTGTATACCGAATGGTGATGAATGATTGTGGAACTTATGCTGTTAAAAAGATTGATGGAAGCAGAAAAGGTTCAGACCAAGTGTTTGAGAGAGAGTTGGAGATCTTGGGTTGCATTAAACATATAAACTTGGTCAACTTGCGGGGATATTGTAGTCTCCCGGCTTCAAAGCTTCTGATCTATGACTTTCTAGCAATGGGTAGCTTAGATGATTTCTTGCATGAACAGGGACCAGAAAAACAACCTTTGGATTGGAGAGCTCGTATAAGGATAGCCTTGGGCTCTGCTAGGGGGATTTCATACTTGCATCATGATTGTAGTCCTAAGATCGTGCATCGTGATATTAAATCGAGTAATATTCTACTTGATGAAAACTTGGAGCCCCATGTTTCTGACTTTGGACTGGCCAAGCTTTTGGTTGATGACGATGCCCATGTCACAACTGTTGTTGCTGGAACATTTGGATATTTGGCTCCAGAATACCTGCAAAGTGGGAGGGCAACTGAAAAATCCGATGTTTATAGCTTTGGAGTTTTATTACTGGAGCTGGTGACTGGGAAGAGACCAACTGATCCAGAATTTGTAAAGAGAGGCTTAAATGTTGTTGGCTGGATGCACGCATTATTGGGAGAGAACAAAATGGATGATATAGTTGACAAAAGGTGCAAGGACGTCGATGCAGACACTGTAGAAGCAATTCTTGAAATAGCAGCCAAGTGCACAGATGCCGACCCCGACAATAGGCCGTCAATGAGTCAAGTGTTGCAGTTTCTAGAGCAAGAAGTCATGTCCCCATGTCCTAGCGATTTCTACGAGTCACATTCTGATTATTCTTGA 1806 42.8 MGMLILIFSSLLLSTLFSPCSLALTQDGLTLLELRTAFNDSRNLLGDWEASDESPCKWIGISCHPEDQRVSSINLPYMQLGGIISPSIGKLSRLQRLALHQNSLHGYIPHEIANCTQLRALYLRSNYLQGGIPSDIGSLSALTILDLSSNSLKGVIPSSIGRLSLLRLLNLSTNFFTGEIPDFGILSTFGRNSFIGNLDLCGHQINKPCRTSMGFPAVLPHAESDEATVPLKRPSHYIKGVIIGAMSTMGVALIVLVPFLWIRWLSKKERAAKKYTEVKKQVVHESSTKLITFHGDLPYPSCEIIEKLESLDEEDVVGSGGFGTVYRMVMNDCGTYAVKKIDGSRKGSDQVFERELEILGCIKHINLVNLRGYCSLPASKLLIYDFLAMGSLDDFLHEQGPEKQPLDWRARIRIALGSARGISYLHHDCSPKIVHRDIKSSNILLDENLEPHVSDFGLAKLLVDDDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPEFVKRGLNVVGWMHALLGENKMDDIVDKRCKDVDADTVEAILEIAAKCTDADPDNRPSMSQVLQFLEQEVMSPCPSDFYESHSDYS 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17303774 17311233 + MC03g1104 Mch3g1516 684419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1516 601 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Mch3g1516 601 Pfam Leucine Rich Repeat 117 139 IPR001611 GO:0005515(InterPro)
Mch3g1516 601 ProSitePatterns Protein kinases ATP-binding region signature. 317 340 IPR017441 GO:0005524(InterPro)
Mch3g1516 601 SMART serkin_6 311 586 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1516 601 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 73 583 IPR051564 GO:0016020(PANTHER)
Mch3g1516 601 Pfam Protein kinase domain 314 579 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1516 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1516 601 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 387 592 - -
Mch3g1516 601 ProSiteProfiles Protein kinase domain profile. 311 586 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1516 601 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 186 - -
Mch3g1516 601 SUPERFAMILY Protein kinase-like (PK-like) 291 582 IPR011009 -
Mch3g1516 601 Gene3D Ribonuclease Inhibitor 25 211 IPR032675 -
Mch3g1516 601 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Mch3g1516 601 SUPERFAMILY L domain-like 25 208 - -
Mch3g1516 601 Gene3D Phosphorylase Kinase; domain 1 269 386 - -
Mch3g1516 601 Gene3D Transferase(Phosphotransferase) domain 1 387 590 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0457 Mch-Chr11:2860305 Mch3g1516 Mch-Chr3:17303774 1.84E-72 dispersed
Mch3g1516 Mch-Chr3:17303774 Mch8g0035 Mch-Chr8:204411 2.56E-77 dispersed
Mch10g0920 Mch-Chr10:6509109 Mch3g1516 Mch-Chr3:17303774 1.61E-154 transposed
Mch11g0882 Mch-Chr11:5992348 Mch3g1516 Mch-Chr3:17303774 1.98E-160 transposed
Mch11g0971 Mch-Chr11:6651344 Mch3g1516 Mch-Chr3:17303774 2.99E-97 transposed
Mch3g1516 Mch-Chr3:17303774 Mch4g2287 Mch-Chr4:24329816 4.66E-43 wgd
Mch3g1516 Mch-Chr3:17303774 Mch6g0211 Mch-Chr6:1415611 8.51E-285 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77284 PF00069 Pkinase 4.60E-48 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1516 - - - 0.0