Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1522 ATGAGAGAGACAGAAACCACCATTATTGGGCTTAAGCTACTAATGATACTTTCTTGTGTGATGATATTTCCAACCCTGAAGGCTAATATTGCAGATTTTGATGAGGTATGGCAGAAAAGAGCTCAAGAAGCCAAGAAGGCTGCCATTGAGGCCTATCAACCCCATCCAGAAGAAGTCACTAGTAATTTCAACCAGCAAGTTCACAAATCCTTAGATGGTGCAAATAACACAAGGAGACATTTGAAGCATTACAGTGGTGGTCCATGCTTAGCTACGAACCCCATCGACCGATGTTGGAGATGTGACAAACACTGGGCTAAAAACCGCAAGAAGCTAGCTGAATGTGCACTTGGCTTCGGCCGTGGAACAACTGGAGGCAAAGATGGAAGGTATTACGTGGTTCGAGATTCGAGCGATAACGACTTGCTCAATCCTAAACCAGGAACCCTGCGCTACGGTGTGATACAGGAAAAACCACTTTGGATTGTATTTGCACACGACATGGTTATTAGGCTAAGTGAAGAGCTTATAATAACCGATAACAAGACAATAGATGGACGCGGTGCCAACGTGCACATCGCCAATGGCGGTCAAATTACTCTACAATTTGTGAAGAATATAATCATCAGTAATCTGCACATCCATGATATCAAGAATGGCCATGGAGGCCTTATAAGAGACTCGGTGAGCCACTATGGTTTACGAACACCGAGCGATGGTGATGGCATCTCAATGTTTGGAGCCACAAAGATTTGGATAGATCACGTTTCAATGTCGAATTGTCAAGATGGACTTATAGATGCCGTCATGGCATCTACTGGCATTACAATCTCCAACTGTCACTTCACCCGACATAACGATGTGATGTTATTGGGTGCAAGTGATAGCTACTCAAATGATCAGATTATGCAGGTAACTCTTGCATTTAATCACTTTGGTAAAGGGTTGGTGCAAAGGATGCCAAGATGCCGATGGGGGTTCGTCCATGTAGTCAATAATGACTACACTCACTGGCTCATGTATGCCATCGGCGGTAGCCACAATCCCACCATCATCAGCCAGGGCAACCGCTTCATTGCCCCGCCAGACCCAAACTGCAAAGAGGTGACAAAAAGGGCATACGCATCGGAGAGCGAGTGGAAGTCATGGAACTGGAGATCAGAAGGAGATCTAATGATGAATGGAGCATTTTTCATCGAATCGGGGAGCCCCATCAGAAAGTACTCCAAGAAAGATGTTATCACTGCAAAACCAGGGAGCTTCGTGACCAGGCTTACACGATTCTCGGGGCCTTTGAAATGCAGAAATAACCGGCCCTGTTAG 1323 45.5 MRETETTIIGLKLLMILSCVMIFPTLKANIADFDEVWQKRAQEAKKAAIEAYQPHPEEVTSNFNQQVHKSLDGANNTRRHLKHYSGGPCLATNPIDRCWRCDKHWAKNRKKLAECALGFGRGTTGGKDGRYYVVRDSSDNDLLNPKPGTLRYGVIQEKPLWIVFAHDMVIRLSEELIITDNKTIDGRGANVHIANGGQITLQFVKNIIISNLHIHDIKNGHGGLIRDSVSHYGLRTPSDGDGISMFGATKIWIDHVSMSNCQDGLIDAVMASTGITISNCHFTRHNDVMLLGASDSYSNDQIMQVTLAFNHFGKGLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSHNPTIISQGNRFIAPPDPNCKEVTKRAYASESEWKSWNWRSEGDLMMNGAFFIESGSPIRKYSKKDVITAKPGSFVTRLTRFSGPLKCRNNRPC 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17330495 17332485 + MC03g1109 Mch3g1522 684425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1522 440 PANTHER PECTATE LYASE 18-RELATED 23 436 IPR045032 GO:0030570(InterPro)
Mch3g1522 440 SMART amb_all 167 364 IPR002022 -
Mch3g1522 440 Gene3D - 92 433 IPR012334 -
Mch3g1522 440 PRINTS Pollen allergen Amb family signature 139 164 IPR018082 -
Mch3g1522 440 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Mch3g1522 440 PRINTS Pollen allergen Amb family signature 341 360 IPR018082 -
Mch3g1522 440 PRINTS Pollen allergen Amb family signature 239 260 IPR018082 -
Mch3g1522 440 PRINTS Pollen allergen Amb family signature 115 132 IPR018082 -
Mch3g1522 440 PRINTS Pollen allergen Amb family signature 383 407 IPR018082 -
Mch3g1522 440 PRINTS Pollen allergen Amb family signature 175 191 IPR018082 -
Mch3g1522 440 SUPERFAMILY Pectin lyase-like 87 435 IPR011050 -
Mch3g1522 440 Pfam Pectate lyase, N terminus 29 81 IPR007524 GO:0030570(InterPro)
Mch3g1522 440 Pfam Pectate lyase 177 358 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1522 Mch-Chr3:17330495 Mch8g1622 Mch-Chr8:13220294 1.83E-223 dispersed
Mch3g1522 Mch-Chr3:17330495 Mch9g2162 Mch-Chr9:22307006 1.77E-209 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1522 K01728 - csv:101218812 802.742