Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1539 ATGCCGCCGAGACGATATGCTTTCGGAAGGGCCGACGAGGCCACCCACCCGGACTCCATTAGAGCCACCTTGGCCGAGTTTGTTTCCACTTTCATCTTCGTCTTCGCCGGAGAAGGCTCCGTCCTCGCTCTCGATAAAATTCTCAGGCCGGCGGATCACGGAGATTACGGCCACGGAGGTTATGGCCATGGAGGTTACGACCATGGATACGGTCGACGGACAGCCGACCTGGGAAGGGCGCCGGCGGAATTTGTAGTGATAGCCATAGCGCATGCGTTTGCGCTGTTCGCGGCGGTGTCGGCGAGCATCAACGTCTCTGGCGGGCATGTGAATCCGGCTGTAACTTTCGGTGCTCTTCTTGGAGGGAGGGTCTCTTTGATCCGTGCCATCTTCTATTGGGTCGCTCAGATCTTGGGCGCCATCGTCGCTTCCCTCCTCCTTAGACTGGCCACCGGCGGCATGAGGCCCATGGGGTTCTTTGTTTCATCAGGAGTTGGGGAATTGCACGGGTTTCTGCTGGAGGTGGTGCTGACTTTCGCTCTGGTTTACACAGTCTACGCCACTGCAATAGATCCGAAGAGGGGTAGTTTGGGAACAATAGCGCCGCTCGCAATCGGGTTAATAGTCGGGGCGAATATCCTAATGGGTGGGCCGTTTGATGGGGCCTGCATGAACCCGGCCAGGGCATTTGGGCCGTCGTTGGTGGGCTGGAGATGGGATAACCATTGGATCTATTGGATCGGCCCATTACTGGGAGGTGGGCTGGCCGGGCTTTTATACGAGTATCTGGTGATTCCGGTTGAACCTCCCCTGCATACCCACCAGCCCCTGGCTCCTGAAGATTAC 846 57.57 MPPRRYAFGRADEATHPDSIRATLAEFVSTFIFVFAGEGSVLALDKILRPADHGDYGHGGYGHGGYDHGYGRRTADLGRAPAEFVVIAIAHAFALFAAVSASINVSGGHVNPAVTFGALLGGRVSLIRAIFYWVAQILGAIVASLLLRLATGGMRPMGFFVSSGVGELHGFLLEVVLTFALVYTVYATAIDPKRGSLGTIAPLAIGLIVGANILMGGPFDGACMNPARAFGPSLVGWRWDNHWIYWIGPLLGGGLAGLLYEYLVIPVEPPLHTHQPLAPEDY 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17444237 17445333 - MC03g1126 Mch3g1539 684442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1539 282 CDD MIP 21 247 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch3g1539 282 SUPERFAMILY Aquaporin-like 13 273 IPR023271 -
Mch3g1539 282 PANTHER AQUAPORIN-8 5 272 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Mch3g1539 282 Gene3D Glycerol uptake facilitator protein. 5 268 IPR023271 -
Mch3g1539 282 ProSitePatterns MIP family signature. 109 117 IPR022357 -
Mch3g1539 282 FunFam Probable aquaporin TIP1-1 64 278 - -
Mch3g1539 282 Pfam Major intrinsic protein 14 260 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch3g1539 282 PRINTS Major intrinsic protein family signature 128 147 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch3g1539 282 PRINTS Major intrinsic protein family signature 243 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch3g1539 282 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch3g1539 282 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch3g1539 282 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch3g1539 282 NCBIfam MIP family channel protein 25 260 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1539 Mch-Chr3:17444237 Mch5g1710 Mch-Chr5:17824641 1.41E-99 dispersed
Mch3g1539 Mch-Chr3:17444237 Mch1g0862 Mch-Chr1:12020213 2.67E-106 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1539 K09873 - csv:101208863 471.085