Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch3g1547 | GAAAGCCGACGGCGAAACCTCACCGACAACCATAAGTCTAAGAAGCAGAGGATAGTCGAGTCTGCTACCGCCGAGGAGGAGATTGAATCGAAGTTTGGATTCGGTCTCTTCTCTGAAGGTGATAAGAGGCTTGGATGGTTGCTCACTTTTGCTCCTTCCTCTCGGAAGGATCAGGATACTGGAAAGGTCTATAGCTGTATCGATCTTTATTTTGTAACTCAGGATGGCAGCAGTTTCAAATCAAAATACAACTTTCGTCCTTATTTCTATGCAGCCACAAAGGATAAAATGGAAACTGATGTGGAGGCTTATTTGAAACGGCGTTATGAAGGTCGAATAGCTGATATTGAGATTTTAGAAAAAGAAGACCTTGATCTTAAGAACCATCTGTCGGGCTTGCATAAGGCATATTTAAAGCTATCATTTGACACTGTTCAAGAATTGATGAATGTAAAAAATGAACTATTCCATGTTGTTGAAAGCAACTGGGAGAAATCTGATGCTGCAGAAGCATATGATTCTATTTTATTTGGGAAAAGAGAACAAAAGCCTCAAGATTTTCTAGAATGTATTGTTGATCTTCGAGAGTATGATGTTCCTTACCACGTTCGCTTTGCTATTGATCATGATTTGCGCTGCGGACAGTGGTATGATGTTAGTGTATCAAGCACTGGTGTTACTCTTGAGAAGAGGAAAGATCTTCTGCAACGTGCTGAAGTTCGCATATGTGCATTTGATATTGAGACCACAAAGCTACCATTGAAATTTCCAGATGCTGAATATGACATGATAATGATGATTTCCTATATGGTTGATGGACAAGGGTACTTGATTATCAACAGAGAGTGTGTTGGAGAAGATATCGAGAATTTGGAGTACACTCCAAAACCTGAATATGAAGGGTTCTTCGAGGTGACCAATGTGAAAAATGAGTTGGAGCTTCTCAAATTGTGGTTTTCCCATATGCGAGAGGTGAAACCTGGTATCTATGTCACCTATAATGGCGACTATTTTGACTGGCCATTCCTTGAAAGCAGAGCGGCATTTCATGGGTTAAAAATGAGTAATGAAGTAGGATCTCAATGCGACAAGAATCAGGGGGAATGTCGTTCAAAATTTGCTTGTCATTTGGATTGCTTTGCCTGGGTGAAGCGTGATAGTTATCTTCCTCAGGGTAGTCATGGTTTGAAGGCTGTCACAAAAGCAAAATTGGGTTATGATCCTCTTGAAGTGAATCCTGAGGATATGGTGCGGTTTGCAAAGGAAAAGCCTCAGATGATGGCTTCCTATTCCGTTTCAGATGCTGTTTCTACATACTACTTGTACATAACCTATGTTCATCCTTTTATTTTTTCTCTTGCAACCATCATTCCAATGACCCCAGACGAGGTATTGCGCAAGGGAAGTGGGACACTTTGTGAAATGCTTTTAATGGTTCAGGCTTACAAGGCTGATGTTGTGTGTCCCAACAAACATCAATCAGATCCAGAGAAGTTCTACAACAACCGGCTTCTTGAAAGTGAGACATACATAGGTGGTCATGTAGAATGTCTTGAGAGTGGTGTATTTAGATCTGACATTCCTACCAGTTTTAGGCTTGATTCATCTGCTTATGATCAATTGATAGACAATCTAGATCGGGATCTACAGTATGCCATACAAGTAGAAGGAAAGATGGACATGGAAATGGTGTCAAACTATAGCAATGTGAAGAATGCTATCATGGAAAAGCTTATTAGATTGCGGGATGGACCTGTACGTGAAGAGTGCCCTTTGATATATCACCTTGATGTAGCTGCAATGTATCCTAACATTATTTTAACAAATAGGCTTCAGCCGCCGTCAATAGTTACAGATGAGGTTTGTACTGCCTGTGATTTCAACCATCCCGAAAAAACTTGTCTACGAAAACTTGAATGGGTTTGGCGTGGAGAGGTATTCATGGCTAAAAAGAGTGACTATTATCATTTGAAGAGGCAAATTGAGTCTGAGTTTGTTGATAGCGGTGACATTCGGTTGTCAAAATCATTTCTTGAACTTCAGAAGTTGGAGCAGCAGGCAAAGCTCAAAGATCGTTTGAAGAAATACTGTCAGAAGGCTTATAAACGGGTACTTGACAAGCCAGTCACTGAAGTTCGAGAAGCAGGGATCTGCATGAGAGAAAACTCCTTCTATATTGACACTGTCCGTAGTTTTCGAGATAGAAGGTATGAGTACAAAGGGCTCAATAAAGTATGGAAGGGGAAACTATCAGAAGCTAAAGAGAGTGGAAATTCAATCAAGATACAGGAAGCCCAAGACATGCTGGTTCTTTATGATTCTTTACAACTTGCTCATAAATGTATCCTCAACTCCTTTTATGGATATGTGATGCGGAAGGGTGCTCGATGGTACTCAATGGAAATGGCTGGGGTTGTTACATATACTGGAGCAAAAATCATTCAGAATGCTCGTCTACTGATCGAGAAAATTGGAAAACCACTGGAGTTAGACACTGATGGTATCTGGTGTGCACTACCTGGATCATTCCCTGAGAACTTTACCTTCAAAACAAAAGACTCAAAGAAGTTGACAATTTCATATCCATGTGTTATGCTTAATGTCGATGTGGCAAGGAACAACACAAATGATCAATACCAGACTCTTATAGATCCTGTGAAGAAAATATATAAAACGCATAGTGAATGCTCAATTGAATTTGAAGTGGATGGACCGTACAAGGCAATGATCCTTCCTGCCTCCAAGGAAGAAGGCATTCTGATCAAGAAGCGATATGCTGTCTTTAACGATGATGGAACCCTTGCAGAGCTGAAAGGCTTTGAGATCAAGCGTAGGGGGGAGTTGAAGCTCATCAAAGTTTTCCAGGCCGAACTTTTTGACAAATTTCTTCATGGTTCTACCTTAGAGGAATGCTATTCAGTTGTTGCATCTGTTGCAAATCGCTGGCTTGATCTTCTAGATAGTCAAGGAAAAGATATTGCAGATAGTGAGTTGCTTGATTATATATCTGAATCCAGTACCATGAGCAAGTCTCTGGCAGACTATGGGGAGCAAAAGTCTTGTGCTGTTACCACTGCAAGACGCCTTGCTGATTTTCTTGGTGACACAATGGTCAGGGATAAAGGCCTACGTTGTCAATATATAGTTGCATGTGAACCCAAGGGAACACCTGTAAGTGAGCGTGCTGTTCCTGTTGCTATATTTGAGACTGATGCAGAGATCATGAAATTTTATGTACGCAAATGGTGCAAAATTTCATCAGAAGCTGGAATTCGATCCATCATTGACTGGTCCTACTACAAGCAACGCCTAAGCTCAGCCATTCAAAAAATTATAACAATTCCAGCTGCCATGCAAAAGGTTGCAAATCCTGTCCCTAGGGTGGTTCATCCTGATTGGTTACATAAGAAAGTTCGTGAGAAGGATGATAAATTTCGCCAACAGAAAATAGTTGATATGTTTGCCTCCTCAAATGGAGCTAAATTTTCAAAGAACAGTGGTTTTAGCTGCAGCAAACATGTGATGAACGAAGAGAATTCTGAAGATTTAGAAGACTTTCAAAAGAAAACGAGTTCTATAAATGGCCCCAAACCAGTTGTCCGATATTATGATGTTAGACCCATGAAACATTCAGTTAGAAGAAATAGCCAAATAGATTCCTCGATGCAGGAAAAAATTAATGCTGGAGGACGTGGGCCTTCTTCACCATTGTATTTTGAAAACATTGACAGAAATGTGGATTACCGAGGATGGCTTGAAATGAAGAAGCGGAAGTGGAAGGATAATTTGGACAAGAGGAAGAAACAAAGATTGGGGACTCCACTTCCTGCTAATGATGTTACAAGGGAGTTAAATTGTGCTACGAATAATAAAGAGGCTCCTAGAATTGCAGGTGTTGATTCATATTTCAAGAGGCATGAAATATCTATCACACACTGCCATTGGCAGATTATACAGCTTGTTCATAGTTCACAGAATGGCCAATTTTTTGTTTGGGCTGTCGTTGAAGGAGTTATGCTAAGGATTCCTATTACAGTTCCAAGAGTTTTTTACCTTAATTCTAAAGTACCCGTCACAGAAGAAGTGGGTAGGGGTGTTAACAAAATCCTTCCCCATGGAAGGCACACCTATAACCTCTATGAGGTTGTGACTGATGAAGGTCAATTTAAGACACAGAGCAATAAACTTGCAGCCCTCCTTGCAGATCCAGAAGTTGAGGGAATCTATGAGAGCAAGGTACCATTGGAGTTCAAGTCTATCCTCCAGATTGGTTGTGTCTGTAAAGTTGATAAAGCTGCTAAAAGACGAAACATTCAAGATGGGTGGAATCTGAATGAACTGCAAATGAAGACTACAACAGAATGCAGTTATCTGGAAAAACCAATAATTTTCTTTTATGTGTATCATAGCATTTCTGAAGGAGGAGCTATCTACATTACTTATTTTCCTGGCATAGGATCCATACTTGTGGTGGTGGTTAGCCCTTACCGAAACAAAGACTTGTCTTCCACTTTTCTTGAAAGGCAATTTCGTGAAGCTTGTCAAATGCTCTCTGGTCAATCACAATCTCCAAATAGTGGTATAAATTACAAGGTTGACTATGTTGCTAACAACAAAGAAGCTGAAGTGATTTTGCAGAGATCAATAACAGAGCACAGGAGCATAAATCGTGGACCTATTGTAGCTGTAATTGATTGCCCAAATCTGCAGCTGCTGAAGTCAGGTGTGAGAGCGTTAGACGATTTTCCATGTGTGAGGGTCCCTTATAATGCTCGTCATAGTCAATATCAGTTTCTTGGTTGGCAACAAAAAGCTGCAAAGATTGGAATGCAACGGTGTGCTGCATCATCCCAGTGGTTGAATGATAGAATCTCTCTTGCCAGATATGCGCATGTACCTGTAGGAAACTTTGAACATGATTGGAAAATTTTTACAGCAGATATTTTCTTTTCAAGAGCATTACATGATCAACAGCAGGTACTTTGGGCATCAGATGATGGTGTTCCAGATATAGGAGGCATTAATATTGAAGATGTGTGTTTCGTGGATGAGGTCCAACAACCTTTTCTGAAATGTTCTGGAGCATATAGAAAAATTTCTGTGGAGCTTAAGATCCATCATTTGGCTGTTAATGCTCTGCTGAAGAGCAGCCAAGTGAATGAAATGGAAGGTGGGTTTGATGAGGCTCCATCGGCATTTCATGTCCTGAAACAATTGATACAAAGGTGTCTTGCAGATGCAGTTACATCTGGAAACGTATATGCTGATGAAATTTTGCAGCATCTTTACCGTTGGATTTCGAGCCCCCAATCAAAACTTCATGACCCAGCTCTTCATCGCTTGCTTCACAAGGTTATGCGGAAGGTGTTTGCTCTTTTGTTGGCTGAACTACGCAAATTAGGTGCCACCATTATTTTTGGGAACTTCTCGAGAATAATTATAGACACGGGAAGGTTTAATCTCTCTGCTGCTAAAGCATACTGTGATAGCTTGCTGAGAACACTACAAACAAGGGACCTGTTCGAGTGGATTGAACTGAAACCAGTACAGTTCTGGCACTCGCTGTTGTTTATGAATCAGTACAATTATGGTGGAATTGGAGCAAGGGAGGATGAAACCACAGATGTTGAATCTCAAGTTGACGTAGTATCCAACTGGAACATTGCTGAATATCTACCGAAGAAGATTCAGGACTCCTTTGTTTCTATCGTTTCTCAATTTGTATATATTCCATGGAAATATGCAACCGAGCAAGCTGCAGCAGGCACATCCTTGCAGCGGGATGACACGTGTACCCCATCCGTTACTGTTGTAGCCACTGAATCGTTTGAATTAAGCGTGACAGAATATCTCAAAGAGCAGCTAAGTTCTTACTTCAGCCACCAACTGTTTGGTATTGTTCGTGATTTACTAAAACAACCTTCTGGTAGTGTTCATAAAGGAGATGCTGCATTGGAGTTCATTAATTACGTCTGCGCTGCTTTGGCTCTAGACCAAAATGTCCAGAATGATGTTCGGGTAATGAAGAAGAATTTACTGAAGTATGTGCACGTAAGAGAGTTTGCACCAGAGACTGAGTTTTCCGATCCCTGCCCGTCCTTCATCTTACCCAATGTCTTTTGCAGCTACTGTAACGAGTGTCGAGATTTGGACTTGTGCCGCGACTCAGCCTTAGGAGCACAAGAATGGCGCTGTGGTGTGGCAGAGTGTGGGCAACCATACAACCAACAAGTGATAGAGAACACTTTGATTCAAATTGTGCAGCAGCGAGAGCGTGCGTATCACGTGCAGGATTTGGTATGCCTTCGATGCAAGCAGGTTAAAGCGGCTCACTTGTGGGAGCAGTGTAGCTGTGCTGGCTCGTTTAAATGCAAAGATGACAATCAAGAATTTTTCAGCGACATGCGGATTCTCTTCGACATAGCCACTCGTCAAGGCTTTCAATTGCTCCAAGAGTTCACTTTATGGATCTTGCATAATGGGCTCCTATTGGAATCCTCATCCGGCGGAGCATAG | 6516 | 41.24 | ESRRRNLTDNHKSKKQRIVESATAEEEIESKFGFGLFSEGDKRLGWLLTFAPSSRKDQDTGKVYSCIDLYFVTQDGSSFKSKYNFRPYFYAATKDKMETDVEAYLKRRYEGRIADIEILEKEDLDLKNHLSGLHKAYLKLSFDTVQELMNVKNELFHVVESNWEKSDAAEAYDSILFGKREQKPQDFLECIVDLREYDVPYHVRFAIDHDLRCGQWYDVSVSSTGVTLEKRKDLLQRAEVRICAFDIETTKLPLKFPDAEYDMIMMISYMVDGQGYLIINRECVGEDIENLEYTPKPEYEGFFEVTNVKNELELLKLWFSHMREVKPGIYVTYNGDYFDWPFLESRAAFHGLKMSNEVGSQCDKNQGECRSKFACHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVSTYYLYITYVHPFIFSLATIIPMTPDEVLRKGSGTLCEMLLMVQAYKADVVCPNKHQSDPEKFYNNRLLESETYIGGHVECLESGVFRSDIPTSFRLDSSAYDQLIDNLDRDLQYAIQVEGKMDMEMVSNYSNVKNAIMEKLIRLRDGPVREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNHPEKTCLRKLEWVWRGEVFMAKKSDYYHLKRQIESEFVDSGDIRLSKSFLELQKLEQQAKLKDRLKKYCQKAYKRVLDKPVTEVREAGICMRENSFYIDTVRSFRDRRYEYKGLNKVWKGKLSEAKESGNSIKIQEAQDMLVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCALPGSFPENFTFKTKDSKKLTISYPCVMLNVDVARNNTNDQYQTLIDPVKKIYKTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSVVASVANRWLDLLDSQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTARRLADFLGDTMVRDKGLRCQYIVACEPKGTPVSERAVPVAIFETDAEIMKFYVRKWCKISSEAGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKDDKFRQQKIVDMFASSNGAKFSKNSGFSCSKHVMNEENSEDLEDFQKKTSSINGPKPVVRYYDVRPMKHSVRRNSQIDSSMQEKINAGGRGPSSPLYFENIDRNVDYRGWLEMKKRKWKDNLDKRKKQRLGTPLPANDVTRELNCATNNKEAPRIAGVDSYFKRHEISITHCHWQIIQLVHSSQNGQFFVWAVVEGVMLRIPITVPRVFYLNSKVPVTEEVGRGVNKILPHGRHTYNLYEVVTDEGQFKTQSNKLAALLADPEVEGIYESKVPLEFKSILQIGCVCKVDKAAKRRNIQDGWNLNELQMKTTTECSYLEKPIIFFYVYHSISEGGAIYITYFPGIGSILVVVVSPYRNKDLSSTFLERQFREACQMLSGQSQSPNSGINYKVDYVANNKEAEVILQRSITEHRSINRGPIVAVIDCPNLQLLKSGVRALDDFPCVRVPYNARHSQYQFLGWQQKAAKIGMQRCAASSQWLNDRISLARYAHVPVGNFEHDWKIFTADIFFSRALHDQQQVLWASDDGVPDIGGINIEDVCFVDEVQQPFLKCSGAYRKISVELKIHHLAVNALLKSSQVNEMEGGFDEAPSAFHVLKQLIQRCLADAVTSGNVYADEILQHLYRWISSPQSKLHDPALHRLLHKVMRKVFALLLAELRKLGATIIFGNFSRIIIDTGRFNLSAAKAYCDSLLRTLQTRDLFEWIELKPVQFWHSLLFMNQYNYGGIGAREDETTDVESQVDVVSNWNIAEYLPKKIQDSFVSIVSQFVYIPWKYATEQAAAGTSLQRDDTCTPSVTVVATESFELSVTEYLKEQLSSYFSHQLFGIVRDLLKQPSGSVHKGDAALEFINYVCAALALDQNVQNDVRVMKKNLLKYVHVREFAPETEFSDPCPSFILPNVFCSYCNECRDLDLCRDSALGAQEWRCGVAECGQPYNQQVIENTLIQIVQQRERAYHVQDLVCLRCKQVKAAHLWEQCSCAGSFKCKDDNQEFFSDMRILFDIATRQGFQLLQEFTLWILHNGLLLESSSGGA | 2171 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 17495842 | 17518137 | - | MC03g1134 | Mch3g1547 | 684450 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch3g1547 | 2171 | CDD | DNA_polB_epsilon_exo | 239 | 443 | - | - | |
Mch3g1547 | 2171 | Pfam | DNA polymerase family B, exonuclease domain | 193 | 399 | IPR006133 | - | |
Mch3g1547 | 2171 | FunFam | DNA polymerase epsilon catalytic subunit | 55 | 226 | - | - | |
Mch3g1547 | 2171 | SUPERFAMILY | Ribonuclease H-like | 64 | 466 | IPR012337 | - | |
Mch3g1547 | 2171 | SMART | polmehr3 | 238 | 841 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
Mch3g1547 | 2171 | FunFam | DNA polymerase epsilon catalytic subunit | 757 | 935 | - | - | |
Mch3g1547 | 2171 | PANTHER | DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A | 5 | 2130 | IPR029703 | GO:0000278(PANTHER)|GO:0003677(PANTHER)|GO:0003677(InterPro)|GO:0003887(PANTHER)|GO:0003887(InterPro)|GO:0006260(InterPro)|GO:0006272(PANTHER)|GO:0006281(InterPro)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008310(PANTHER)|GO:0008622(PANTHER)|GO:0008622(InterPro)|GO:0045004(PANTHER) | |
Mch3g1547 | 2171 | FunFam | DNA polymerase epsilon catalytic subunit | 722 | 797 | - | - | |
Mch3g1547 | 2171 | Gene3D | DNA Polymerase, chain B, domain 1 | 54 | 232 | - | - | |
Mch3g1547 | 2171 | FunFam | DNA polymerase epsilon catalytic subunit | 939 | 1123 | - | - | |
Mch3g1547 | 2171 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Mch3g1547 | 2171 | SMART | DUF1744_2 | 1505 | 1866 | IPR013697 | GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro) | |
Mch3g1547 | 2171 | Pfam | Domain of unknown function (DUF1744) | 1518 | 1725 | IPR013697 | GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro) | |
Mch3g1547 | 2171 | Pfam | Domain of unknown function (DUF1744) | 1730 | 1866 | IPR013697 | GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro) | |
Mch3g1547 | 2171 | Pfam | DNA polymerase epsilon catalytic subunit A, thumb domain | 944 | 1119 | - | - | |
Mch3g1547 | 2171 | Gene3D | - | 939 | 1123 | IPR042087 | - | |
Mch3g1547 | 2171 | Gene3D | - | 237 | 467 | IPR036397 | GO:0003676(InterPro) | |
Mch3g1547 | 2171 | FunFam | DNA polymerase epsilon catalytic subunit | 239 | 467 | - | - | |
Mch3g1547 | 2171 | Gene3D | Palm domain of DNA polymerase | 746 | 935 | IPR023211 | - | |
Mch3g1547 | 2171 | SUPERFAMILY | DNA/RNA polymerases | 486 | 1113 | IPR043502 | - | |
Mch3g1547 | 2171 | CDD | POLBc_epsilon | 502 | 1120 | - | - | |
Mch3g1547 | 2171 | Pfam | Zinc finger domain of DNA polymerase-epsilon | 2096 | 2158 | IPR054475 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch2g0263 | Mch-Chr2:1946701 | Mch3g1547 | Mch-Chr3:17495842 | 0 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch3g1547 | K02324 | - | csv:101208568 | 3787.27 |