Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1547 GAAAGCCGACGGCGAAACCTCACCGACAACCATAAGTCTAAGAAGCAGAGGATAGTCGAGTCTGCTACCGCCGAGGAGGAGATTGAATCGAAGTTTGGATTCGGTCTCTTCTCTGAAGGTGATAAGAGGCTTGGATGGTTGCTCACTTTTGCTCCTTCCTCTCGGAAGGATCAGGATACTGGAAAGGTCTATAGCTGTATCGATCTTTATTTTGTAACTCAGGATGGCAGCAGTTTCAAATCAAAATACAACTTTCGTCCTTATTTCTATGCAGCCACAAAGGATAAAATGGAAACTGATGTGGAGGCTTATTTGAAACGGCGTTATGAAGGTCGAATAGCTGATATTGAGATTTTAGAAAAAGAAGACCTTGATCTTAAGAACCATCTGTCGGGCTTGCATAAGGCATATTTAAAGCTATCATTTGACACTGTTCAAGAATTGATGAATGTAAAAAATGAACTATTCCATGTTGTTGAAAGCAACTGGGAGAAATCTGATGCTGCAGAAGCATATGATTCTATTTTATTTGGGAAAAGAGAACAAAAGCCTCAAGATTTTCTAGAATGTATTGTTGATCTTCGAGAGTATGATGTTCCTTACCACGTTCGCTTTGCTATTGATCATGATTTGCGCTGCGGACAGTGGTATGATGTTAGTGTATCAAGCACTGGTGTTACTCTTGAGAAGAGGAAAGATCTTCTGCAACGTGCTGAAGTTCGCATATGTGCATTTGATATTGAGACCACAAAGCTACCATTGAAATTTCCAGATGCTGAATATGACATGATAATGATGATTTCCTATATGGTTGATGGACAAGGGTACTTGATTATCAACAGAGAGTGTGTTGGAGAAGATATCGAGAATTTGGAGTACACTCCAAAACCTGAATATGAAGGGTTCTTCGAGGTGACCAATGTGAAAAATGAGTTGGAGCTTCTCAAATTGTGGTTTTCCCATATGCGAGAGGTGAAACCTGGTATCTATGTCACCTATAATGGCGACTATTTTGACTGGCCATTCCTTGAAAGCAGAGCGGCATTTCATGGGTTAAAAATGAGTAATGAAGTAGGATCTCAATGCGACAAGAATCAGGGGGAATGTCGTTCAAAATTTGCTTGTCATTTGGATTGCTTTGCCTGGGTGAAGCGTGATAGTTATCTTCCTCAGGGTAGTCATGGTTTGAAGGCTGTCACAAAAGCAAAATTGGGTTATGATCCTCTTGAAGTGAATCCTGAGGATATGGTGCGGTTTGCAAAGGAAAAGCCTCAGATGATGGCTTCCTATTCCGTTTCAGATGCTGTTTCTACATACTACTTGTACATAACCTATGTTCATCCTTTTATTTTTTCTCTTGCAACCATCATTCCAATGACCCCAGACGAGGTATTGCGCAAGGGAAGTGGGACACTTTGTGAAATGCTTTTAATGGTTCAGGCTTACAAGGCTGATGTTGTGTGTCCCAACAAACATCAATCAGATCCAGAGAAGTTCTACAACAACCGGCTTCTTGAAAGTGAGACATACATAGGTGGTCATGTAGAATGTCTTGAGAGTGGTGTATTTAGATCTGACATTCCTACCAGTTTTAGGCTTGATTCATCTGCTTATGATCAATTGATAGACAATCTAGATCGGGATCTACAGTATGCCATACAAGTAGAAGGAAAGATGGACATGGAAATGGTGTCAAACTATAGCAATGTGAAGAATGCTATCATGGAAAAGCTTATTAGATTGCGGGATGGACCTGTACGTGAAGAGTGCCCTTTGATATATCACCTTGATGTAGCTGCAATGTATCCTAACATTATTTTAACAAATAGGCTTCAGCCGCCGTCAATAGTTACAGATGAGGTTTGTACTGCCTGTGATTTCAACCATCCCGAAAAAACTTGTCTACGAAAACTTGAATGGGTTTGGCGTGGAGAGGTATTCATGGCTAAAAAGAGTGACTATTATCATTTGAAGAGGCAAATTGAGTCTGAGTTTGTTGATAGCGGTGACATTCGGTTGTCAAAATCATTTCTTGAACTTCAGAAGTTGGAGCAGCAGGCAAAGCTCAAAGATCGTTTGAAGAAATACTGTCAGAAGGCTTATAAACGGGTACTTGACAAGCCAGTCACTGAAGTTCGAGAAGCAGGGATCTGCATGAGAGAAAACTCCTTCTATATTGACACTGTCCGTAGTTTTCGAGATAGAAGGTATGAGTACAAAGGGCTCAATAAAGTATGGAAGGGGAAACTATCAGAAGCTAAAGAGAGTGGAAATTCAATCAAGATACAGGAAGCCCAAGACATGCTGGTTCTTTATGATTCTTTACAACTTGCTCATAAATGTATCCTCAACTCCTTTTATGGATATGTGATGCGGAAGGGTGCTCGATGGTACTCAATGGAAATGGCTGGGGTTGTTACATATACTGGAGCAAAAATCATTCAGAATGCTCGTCTACTGATCGAGAAAATTGGAAAACCACTGGAGTTAGACACTGATGGTATCTGGTGTGCACTACCTGGATCATTCCCTGAGAACTTTACCTTCAAAACAAAAGACTCAAAGAAGTTGACAATTTCATATCCATGTGTTATGCTTAATGTCGATGTGGCAAGGAACAACACAAATGATCAATACCAGACTCTTATAGATCCTGTGAAGAAAATATATAAAACGCATAGTGAATGCTCAATTGAATTTGAAGTGGATGGACCGTACAAGGCAATGATCCTTCCTGCCTCCAAGGAAGAAGGCATTCTGATCAAGAAGCGATATGCTGTCTTTAACGATGATGGAACCCTTGCAGAGCTGAAAGGCTTTGAGATCAAGCGTAGGGGGGAGTTGAAGCTCATCAAAGTTTTCCAGGCCGAACTTTTTGACAAATTTCTTCATGGTTCTACCTTAGAGGAATGCTATTCAGTTGTTGCATCTGTTGCAAATCGCTGGCTTGATCTTCTAGATAGTCAAGGAAAAGATATTGCAGATAGTGAGTTGCTTGATTATATATCTGAATCCAGTACCATGAGCAAGTCTCTGGCAGACTATGGGGAGCAAAAGTCTTGTGCTGTTACCACTGCAAGACGCCTTGCTGATTTTCTTGGTGACACAATGGTCAGGGATAAAGGCCTACGTTGTCAATATATAGTTGCATGTGAACCCAAGGGAACACCTGTAAGTGAGCGTGCTGTTCCTGTTGCTATATTTGAGACTGATGCAGAGATCATGAAATTTTATGTACGCAAATGGTGCAAAATTTCATCAGAAGCTGGAATTCGATCCATCATTGACTGGTCCTACTACAAGCAACGCCTAAGCTCAGCCATTCAAAAAATTATAACAATTCCAGCTGCCATGCAAAAGGTTGCAAATCCTGTCCCTAGGGTGGTTCATCCTGATTGGTTACATAAGAAAGTTCGTGAGAAGGATGATAAATTTCGCCAACAGAAAATAGTTGATATGTTTGCCTCCTCAAATGGAGCTAAATTTTCAAAGAACAGTGGTTTTAGCTGCAGCAAACATGTGATGAACGAAGAGAATTCTGAAGATTTAGAAGACTTTCAAAAGAAAACGAGTTCTATAAATGGCCCCAAACCAGTTGTCCGATATTATGATGTTAGACCCATGAAACATTCAGTTAGAAGAAATAGCCAAATAGATTCCTCGATGCAGGAAAAAATTAATGCTGGAGGACGTGGGCCTTCTTCACCATTGTATTTTGAAAACATTGACAGAAATGTGGATTACCGAGGATGGCTTGAAATGAAGAAGCGGAAGTGGAAGGATAATTTGGACAAGAGGAAGAAACAAAGATTGGGGACTCCACTTCCTGCTAATGATGTTACAAGGGAGTTAAATTGTGCTACGAATAATAAAGAGGCTCCTAGAATTGCAGGTGTTGATTCATATTTCAAGAGGCATGAAATATCTATCACACACTGCCATTGGCAGATTATACAGCTTGTTCATAGTTCACAGAATGGCCAATTTTTTGTTTGGGCTGTCGTTGAAGGAGTTATGCTAAGGATTCCTATTACAGTTCCAAGAGTTTTTTACCTTAATTCTAAAGTACCCGTCACAGAAGAAGTGGGTAGGGGTGTTAACAAAATCCTTCCCCATGGAAGGCACACCTATAACCTCTATGAGGTTGTGACTGATGAAGGTCAATTTAAGACACAGAGCAATAAACTTGCAGCCCTCCTTGCAGATCCAGAAGTTGAGGGAATCTATGAGAGCAAGGTACCATTGGAGTTCAAGTCTATCCTCCAGATTGGTTGTGTCTGTAAAGTTGATAAAGCTGCTAAAAGACGAAACATTCAAGATGGGTGGAATCTGAATGAACTGCAAATGAAGACTACAACAGAATGCAGTTATCTGGAAAAACCAATAATTTTCTTTTATGTGTATCATAGCATTTCTGAAGGAGGAGCTATCTACATTACTTATTTTCCTGGCATAGGATCCATACTTGTGGTGGTGGTTAGCCCTTACCGAAACAAAGACTTGTCTTCCACTTTTCTTGAAAGGCAATTTCGTGAAGCTTGTCAAATGCTCTCTGGTCAATCACAATCTCCAAATAGTGGTATAAATTACAAGGTTGACTATGTTGCTAACAACAAAGAAGCTGAAGTGATTTTGCAGAGATCAATAACAGAGCACAGGAGCATAAATCGTGGACCTATTGTAGCTGTAATTGATTGCCCAAATCTGCAGCTGCTGAAGTCAGGTGTGAGAGCGTTAGACGATTTTCCATGTGTGAGGGTCCCTTATAATGCTCGTCATAGTCAATATCAGTTTCTTGGTTGGCAACAAAAAGCTGCAAAGATTGGAATGCAACGGTGTGCTGCATCATCCCAGTGGTTGAATGATAGAATCTCTCTTGCCAGATATGCGCATGTACCTGTAGGAAACTTTGAACATGATTGGAAAATTTTTACAGCAGATATTTTCTTTTCAAGAGCATTACATGATCAACAGCAGGTACTTTGGGCATCAGATGATGGTGTTCCAGATATAGGAGGCATTAATATTGAAGATGTGTGTTTCGTGGATGAGGTCCAACAACCTTTTCTGAAATGTTCTGGAGCATATAGAAAAATTTCTGTGGAGCTTAAGATCCATCATTTGGCTGTTAATGCTCTGCTGAAGAGCAGCCAAGTGAATGAAATGGAAGGTGGGTTTGATGAGGCTCCATCGGCATTTCATGTCCTGAAACAATTGATACAAAGGTGTCTTGCAGATGCAGTTACATCTGGAAACGTATATGCTGATGAAATTTTGCAGCATCTTTACCGTTGGATTTCGAGCCCCCAATCAAAACTTCATGACCCAGCTCTTCATCGCTTGCTTCACAAGGTTATGCGGAAGGTGTTTGCTCTTTTGTTGGCTGAACTACGCAAATTAGGTGCCACCATTATTTTTGGGAACTTCTCGAGAATAATTATAGACACGGGAAGGTTTAATCTCTCTGCTGCTAAAGCATACTGTGATAGCTTGCTGAGAACACTACAAACAAGGGACCTGTTCGAGTGGATTGAACTGAAACCAGTACAGTTCTGGCACTCGCTGTTGTTTATGAATCAGTACAATTATGGTGGAATTGGAGCAAGGGAGGATGAAACCACAGATGTTGAATCTCAAGTTGACGTAGTATCCAACTGGAACATTGCTGAATATCTACCGAAGAAGATTCAGGACTCCTTTGTTTCTATCGTTTCTCAATTTGTATATATTCCATGGAAATATGCAACCGAGCAAGCTGCAGCAGGCACATCCTTGCAGCGGGATGACACGTGTACCCCATCCGTTACTGTTGTAGCCACTGAATCGTTTGAATTAAGCGTGACAGAATATCTCAAAGAGCAGCTAAGTTCTTACTTCAGCCACCAACTGTTTGGTATTGTTCGTGATTTACTAAAACAACCTTCTGGTAGTGTTCATAAAGGAGATGCTGCATTGGAGTTCATTAATTACGTCTGCGCTGCTTTGGCTCTAGACCAAAATGTCCAGAATGATGTTCGGGTAATGAAGAAGAATTTACTGAAGTATGTGCACGTAAGAGAGTTTGCACCAGAGACTGAGTTTTCCGATCCCTGCCCGTCCTTCATCTTACCCAATGTCTTTTGCAGCTACTGTAACGAGTGTCGAGATTTGGACTTGTGCCGCGACTCAGCCTTAGGAGCACAAGAATGGCGCTGTGGTGTGGCAGAGTGTGGGCAACCATACAACCAACAAGTGATAGAGAACACTTTGATTCAAATTGTGCAGCAGCGAGAGCGTGCGTATCACGTGCAGGATTTGGTATGCCTTCGATGCAAGCAGGTTAAAGCGGCTCACTTGTGGGAGCAGTGTAGCTGTGCTGGCTCGTTTAAATGCAAAGATGACAATCAAGAATTTTTCAGCGACATGCGGATTCTCTTCGACATAGCCACTCGTCAAGGCTTTCAATTGCTCCAAGAGTTCACTTTATGGATCTTGCATAATGGGCTCCTATTGGAATCCTCATCCGGCGGAGCATAG 6516 41.24 ESRRRNLTDNHKSKKQRIVESATAEEEIESKFGFGLFSEGDKRLGWLLTFAPSSRKDQDTGKVYSCIDLYFVTQDGSSFKSKYNFRPYFYAATKDKMETDVEAYLKRRYEGRIADIEILEKEDLDLKNHLSGLHKAYLKLSFDTVQELMNVKNELFHVVESNWEKSDAAEAYDSILFGKREQKPQDFLECIVDLREYDVPYHVRFAIDHDLRCGQWYDVSVSSTGVTLEKRKDLLQRAEVRICAFDIETTKLPLKFPDAEYDMIMMISYMVDGQGYLIINRECVGEDIENLEYTPKPEYEGFFEVTNVKNELELLKLWFSHMREVKPGIYVTYNGDYFDWPFLESRAAFHGLKMSNEVGSQCDKNQGECRSKFACHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVSTYYLYITYVHPFIFSLATIIPMTPDEVLRKGSGTLCEMLLMVQAYKADVVCPNKHQSDPEKFYNNRLLESETYIGGHVECLESGVFRSDIPTSFRLDSSAYDQLIDNLDRDLQYAIQVEGKMDMEMVSNYSNVKNAIMEKLIRLRDGPVREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNHPEKTCLRKLEWVWRGEVFMAKKSDYYHLKRQIESEFVDSGDIRLSKSFLELQKLEQQAKLKDRLKKYCQKAYKRVLDKPVTEVREAGICMRENSFYIDTVRSFRDRRYEYKGLNKVWKGKLSEAKESGNSIKIQEAQDMLVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCALPGSFPENFTFKTKDSKKLTISYPCVMLNVDVARNNTNDQYQTLIDPVKKIYKTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSVVASVANRWLDLLDSQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTARRLADFLGDTMVRDKGLRCQYIVACEPKGTPVSERAVPVAIFETDAEIMKFYVRKWCKISSEAGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKDDKFRQQKIVDMFASSNGAKFSKNSGFSCSKHVMNEENSEDLEDFQKKTSSINGPKPVVRYYDVRPMKHSVRRNSQIDSSMQEKINAGGRGPSSPLYFENIDRNVDYRGWLEMKKRKWKDNLDKRKKQRLGTPLPANDVTRELNCATNNKEAPRIAGVDSYFKRHEISITHCHWQIIQLVHSSQNGQFFVWAVVEGVMLRIPITVPRVFYLNSKVPVTEEVGRGVNKILPHGRHTYNLYEVVTDEGQFKTQSNKLAALLADPEVEGIYESKVPLEFKSILQIGCVCKVDKAAKRRNIQDGWNLNELQMKTTTECSYLEKPIIFFYVYHSISEGGAIYITYFPGIGSILVVVVSPYRNKDLSSTFLERQFREACQMLSGQSQSPNSGINYKVDYVANNKEAEVILQRSITEHRSINRGPIVAVIDCPNLQLLKSGVRALDDFPCVRVPYNARHSQYQFLGWQQKAAKIGMQRCAASSQWLNDRISLARYAHVPVGNFEHDWKIFTADIFFSRALHDQQQVLWASDDGVPDIGGINIEDVCFVDEVQQPFLKCSGAYRKISVELKIHHLAVNALLKSSQVNEMEGGFDEAPSAFHVLKQLIQRCLADAVTSGNVYADEILQHLYRWISSPQSKLHDPALHRLLHKVMRKVFALLLAELRKLGATIIFGNFSRIIIDTGRFNLSAAKAYCDSLLRTLQTRDLFEWIELKPVQFWHSLLFMNQYNYGGIGAREDETTDVESQVDVVSNWNIAEYLPKKIQDSFVSIVSQFVYIPWKYATEQAAAGTSLQRDDTCTPSVTVVATESFELSVTEYLKEQLSSYFSHQLFGIVRDLLKQPSGSVHKGDAALEFINYVCAALALDQNVQNDVRVMKKNLLKYVHVREFAPETEFSDPCPSFILPNVFCSYCNECRDLDLCRDSALGAQEWRCGVAECGQPYNQQVIENTLIQIVQQRERAYHVQDLVCLRCKQVKAAHLWEQCSCAGSFKCKDDNQEFFSDMRILFDIATRQGFQLLQEFTLWILHNGLLLESSSGGA 2171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17495842 17518137 - MC03g1134 Mch3g1547 684450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1547 2171 CDD DNA_polB_epsilon_exo 239 443 - -
Mch3g1547 2171 Pfam DNA polymerase family B, exonuclease domain 193 399 IPR006133 -
Mch3g1547 2171 FunFam DNA polymerase epsilon catalytic subunit 55 226 - -
Mch3g1547 2171 SUPERFAMILY Ribonuclease H-like 64 466 IPR012337 -
Mch3g1547 2171 SMART polmehr3 238 841 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Mch3g1547 2171 FunFam DNA polymerase epsilon catalytic subunit 757 935 - -
Mch3g1547 2171 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 5 2130 IPR029703 GO:0000278(PANTHER)|GO:0003677(PANTHER)|GO:0003677(InterPro)|GO:0003887(PANTHER)|GO:0003887(InterPro)|GO:0006260(InterPro)|GO:0006272(PANTHER)|GO:0006281(InterPro)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008310(PANTHER)|GO:0008622(PANTHER)|GO:0008622(InterPro)|GO:0045004(PANTHER)
Mch3g1547 2171 FunFam DNA polymerase epsilon catalytic subunit 722 797 - -
Mch3g1547 2171 Gene3D DNA Polymerase, chain B, domain 1 54 232 - -
Mch3g1547 2171 FunFam DNA polymerase epsilon catalytic subunit 939 1123 - -
Mch3g1547 2171 MobiDBLite consensus disorder prediction 1 20 - -
Mch3g1547 2171 SMART DUF1744_2 1505 1866 IPR013697 GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro)
Mch3g1547 2171 Pfam Domain of unknown function (DUF1744) 1518 1725 IPR013697 GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro)
Mch3g1547 2171 Pfam Domain of unknown function (DUF1744) 1730 1866 IPR013697 GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro)
Mch3g1547 2171 Pfam DNA polymerase epsilon catalytic subunit A, thumb domain 944 1119 - -
Mch3g1547 2171 Gene3D - 939 1123 IPR042087 -
Mch3g1547 2171 Gene3D - 237 467 IPR036397 GO:0003676(InterPro)
Mch3g1547 2171 FunFam DNA polymerase epsilon catalytic subunit 239 467 - -
Mch3g1547 2171 Gene3D Palm domain of DNA polymerase 746 935 IPR023211 -
Mch3g1547 2171 SUPERFAMILY DNA/RNA polymerases 486 1113 IPR043502 -
Mch3g1547 2171 CDD POLBc_epsilon 502 1120 - -
Mch3g1547 2171 Pfam Zinc finger domain of DNA polymerase-epsilon 2096 2158 IPR054475 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0263 Mch-Chr2:1946701 Mch3g1547 Mch-Chr3:17495842 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1547 K02324 - csv:101208568 3787.27