Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1565 CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTTCAAATTCAAGTTTGAAGAAGAGTTTCTTCAAGTTTTGTTTCCCATGCTGGCTGATCTCTCCTCTCCCTCTCTCCCTTGTTTTGAGCCTTTGTCTAATTGCTTTGAAAACAATGGAACCAATAACAAAAGAAAACGAAGACCTGCTGGAACTCCAGACCCGGATGCGGAGGTGGTTTCTCTCTCTCCGAAAACTCTATTGGAATCGGATCGATACGTGTGCGAGATCTGTAACCAGGGGTTTCAGAGGGATCAAAATCTGCAGATGCACCGGCGGCGCCACAAGGTGCCGTGGAAGCTGCTGAAGCGATCAGAGGCGGCGGCGGCGGTGCGGAAAAGGGTGTTTGTTTGCCCGGAGCCGAGCTGCTTACACCACAACCCTACTCATGCGTTGGGGGATTTGGTGGGAATTAAGAAGCACTTTAGGAGAAAGCACAGCAACCATAAGCAGTGGGTTTGTGAAAAATGCTCCAAAGGCTACGCTGTTCAGTCTGATTATAAGGCACATCTCAAAACCTGTGGAACCAGAGGCCATTCTTGTGACTGTGGTCGAGTTTTCTCCAGGGTGGAGAGTTTCATAGAACACCAAGATGCTTGCAAATTGGGACATGGGCAACAATCAGAAGTACTTCCATGTTTGCAGCCACCAGCTTGCTTATCAAGAACAGCTTCTAGTCCCACTCCGAGCCCTTCTTCTGACACAAACTTCACATTCTTAAACCAAAACCAAAACCAAAACAAAAACCACAATCTTTCTACAACCCATCACCAAAATTTGGACCTTCAACTTTCCACCACCACCACTTCAACTTCCAACATTCATCTCTCTCTTTCTCCAAAGCAACACCAAAACAATAGCAACACCGACTTCTCCACCCATTTGCAGCTCTCCATTGGGTCTTCCACTAATTACACCACTGACAAAATTAGCAATAATAATAATTGTAATGACCAATATAATACGAGTGGTGATGAGAAAATTATGAGCACTTCTTTGGCCTTGTTGAGGCTGAAAAAGGAGGCTGGGGAGCAGCTGAGAGAGGCAATGAAGGAGAAGGCTGTGGCAGAAGAAGGGAGAAGAGAAGCAAAGAGGCAGATTGAGTTGGCTGAGAAGGAGTTGGCCAATGCCAAGAGAATGAGGCAACAGGCTCAAGCTGAGCTACAAAGGGCCCTTGCTTTGAAAGAACATGCCATCAAGAAAATCAACTCCACTATTCTCCAAATCACTTGCCAAGTTTGTAGGCAGCATTTTCATTTGCCAAAGATT 2169 40.76 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLFKFKFEEEFLQVLFPMLADLSSPSLPCFEPLSNCFENNGTNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRSEAAAAVRKRVFVCPEPSCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACKLGHGQQSEVLPCLQPPACLSRTASSPTPSPSSDTNFTFLNQNQNQNKNHNLSTTHHQNLDLQLSTTTTSTSNIHLSLSPKQHQNNSNTDFSTHLQLSIGSSTNYTTDKISNNNNCNDQYNTSGDEKIMSTSLALLRLKKEAGEQLREAMKEKAVAEEGRREAKRQIELAEKELANAKRMRQQAQAELQRALALKEHAIKKINSTILQITCQVCRQHFHLPKI 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17673568 17676734 + MC03g1150 Mch3g1565 684468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1565 723 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 451 475 - -
Mch3g1565 723 CDD ATP-synt_Fo_b 637 702 - -
Mch3g1565 723 FunFam protein indeterminate-domain 12-like 352 422 - -
Mch3g1565 723 SUPERFAMILY beta-beta-alpha zinc fingers 372 472 IPR036236 -
Mch3g1565 723 Coils Coil 639 701 - -
Mch3g1565 723 ProSiteProfiles Zinc finger C2H2 type domain profile. 373 395 IPR013087 -
Mch3g1565 723 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 338 689 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch3g1565 723 ProSitePatterns Zinc finger C2H2 type domain signature. 375 395 IPR013087 -
Mch3g1565 723 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 412 446 - -
Mch3g1565 723 Gene3D Classic Zinc Finger 361 449 - -
Mch3g1565 723 SMART c2h2final6 452 479 IPR013087 -
Mch3g1565 723 SMART c2h2final6 416 446 IPR013087 -
Mch3g1565 723 SMART c2h2final6 373 395 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1565 Mch-Chr3:17673568 Mch3g1793 Mch-Chr3:19137507 6.83E-114 dispersed
Mch3g1565 Mch-Chr3:17673568 Mch8g0756 Mch-Chr8:5354386 1.07E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43068 None None None None Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1565 K25871 - csv:101210748 594.734