Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1570 ATGGCTCTGGTTCGCGATCGCCGCCACCTGAACCTCCGCCTCCCCGACCTCTCCGACGCCCGCCCCCGCTTCCCTCTACCGCTGCCTCCGTCCTCCGCCGCCGCTCCCGCCGCCTCCCCTGCCATCGCCACCGCCGATCTCGACAAGATCCAAGTCCTCGGCCACGGCAACGGCGGCACAGTCTACAAAGTCCGCCACAAGCGCACTTCCACCACCTACGCCCTCAAGGTCGTCCACGGCGACTGCGATCCAACCGTCCGCCGCCAGGTCTTCAGAGAGATGGAGATTCTCCGGCGTACGGACTCTCCCTACGTGGTCCAGTGCCATGGAATCTTCGAGAAGCCGTCCGGAGACGTGACGATTCTGATGGAGTACATGGATTTAGGATCGCTCGATTCGCTGCTGAAGAAGAACTCGACGTTGCCTGAATCCACGCTCTCTCACGTTTCTCGCCAGGTTCTTAACGGCCTCCACTACCTTCACTCTCACAAAATCATTCATCGCGATATAAAACCGTCGAATCTGTTGGTGAACAAGAATATGGAGGTGAAAATCGCGGATTTCGGAGTCAGTAAAATTATGTGCCGGACTCTGGATGCTTGCAATTCCTACGTCGGAACCTGCGCTTATATGAGTCCGGAGCGGTTCGATCCGGACGCCTACGGCGGAAATTACAACGGTTACGCCGGAGACATTTGGAGTTTGGGGCTCACTCTTCTGGAGCTCTATTTAGGCCATTTTCCTTTTCTGCCGCCCGGTCAGAGGCCGGATTGGGCCACTCTCATGTGCGCGATTTGCTTCGGCGAGCCGCCGACCTTGCCGGAGGACGCGTCGGAGGATTTCCGGAGCTTCGTCGAGTGTTGCTTGCAGAAGGACTCGAGCAAGCGGTGGTCGGCGGCGCAATTGTTGACGCATCCGTTCGTTTGCAAGGAATCGAAACCCGATCGGTGA 951 58.25 MALVRDRRHLNLRLPDLSDARPRFPLPLPPSSAAAPAASPAIATADLDKIQVLGHGNGGTVYKVRHKRTSTTYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLPESTLSHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPDAYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPPGQRPDWATLMCAICFGEPPTLPEDASEDFRSFVECCLQKDSSKRWSAAQLLTHPFVCKESKPDR 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17718940 17720559 + MC03g_new0416 Mch3g1570 684473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1570 316 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 40 311 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Mch3g1570 316 Gene3D Phosphorylase Kinase; domain 1 32 127 - -
Mch3g1570 316 Gene3D Transferase(Phosphotransferase) domain 1 129 315 - -
Mch3g1570 316 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1570 316 FunFam Mitogen-activated protein kinase kinase 29 123 - -
Mch3g1570 316 SUPERFAMILY Protein kinase-like (PK-like) 44 311 IPR011009 -
Mch3g1570 316 ProSiteProfiles Protein kinase domain profile. 47 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1570 316 Pfam Protein kinase domain 49 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1570 316 FunFam Mitogen-activated protein kinase 2 128 316 - -
Mch3g1570 316 CDD PKc_MAPKK_plant_like 45 308 - -
Mch3g1570 316 SMART serkin_6 47 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1570 316 ProSitePatterns Protein kinases ATP-binding region signature. 53 76 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1570 Mch-Chr3:17718940 Mch8g1018 Mch-Chr8:7204547 8.39E-101 dispersed
Mch3g1570 Mch-Chr3:17718940 Mch2g0539 Mch-Chr2:3790771 3.80E-34 transposed
Mch3g1570 Mch-Chr3:17718940 Mch4g2219 Mch-Chr4:23817061 2.25E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77286 PF00069 Pkinase 2.30E-65 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1570 K20604 - csv:101203133 551.592