Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch3g1570 | ATGGCTCTGGTTCGCGATCGCCGCCACCTGAACCTCCGCCTCCCCGACCTCTCCGACGCCCGCCCCCGCTTCCCTCTACCGCTGCCTCCGTCCTCCGCCGCCGCTCCCGCCGCCTCCCCTGCCATCGCCACCGCCGATCTCGACAAGATCCAAGTCCTCGGCCACGGCAACGGCGGCACAGTCTACAAAGTCCGCCACAAGCGCACTTCCACCACCTACGCCCTCAAGGTCGTCCACGGCGACTGCGATCCAACCGTCCGCCGCCAGGTCTTCAGAGAGATGGAGATTCTCCGGCGTACGGACTCTCCCTACGTGGTCCAGTGCCATGGAATCTTCGAGAAGCCGTCCGGAGACGTGACGATTCTGATGGAGTACATGGATTTAGGATCGCTCGATTCGCTGCTGAAGAAGAACTCGACGTTGCCTGAATCCACGCTCTCTCACGTTTCTCGCCAGGTTCTTAACGGCCTCCACTACCTTCACTCTCACAAAATCATTCATCGCGATATAAAACCGTCGAATCTGTTGGTGAACAAGAATATGGAGGTGAAAATCGCGGATTTCGGAGTCAGTAAAATTATGTGCCGGACTCTGGATGCTTGCAATTCCTACGTCGGAACCTGCGCTTATATGAGTCCGGAGCGGTTCGATCCGGACGCCTACGGCGGAAATTACAACGGTTACGCCGGAGACATTTGGAGTTTGGGGCTCACTCTTCTGGAGCTCTATTTAGGCCATTTTCCTTTTCTGCCGCCCGGTCAGAGGCCGGATTGGGCCACTCTCATGTGCGCGATTTGCTTCGGCGAGCCGCCGACCTTGCCGGAGGACGCGTCGGAGGATTTCCGGAGCTTCGTCGAGTGTTGCTTGCAGAAGGACTCGAGCAAGCGGTGGTCGGCGGCGCAATTGTTGACGCATCCGTTCGTTTGCAAGGAATCGAAACCCGATCGGTGA | 951 | 58.25 | MALVRDRRHLNLRLPDLSDARPRFPLPLPPSSAAAPAASPAIATADLDKIQVLGHGNGGTVYKVRHKRTSTTYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLPESTLSHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPDAYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPPGQRPDWATLMCAICFGEPPTLPEDASEDFRSFVECCLQKDSSKRWSAAQLLTHPFVCKESKPDR | 316 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 17718940 | 17720559 | + | MC03g_new0416 | Mch3g1570 | 684473 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch3g1570 | 316 | PANTHER | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED | 40 | 311 | - | GO:0000165(PANTHER)|GO:0004708(PANTHER) | |
Mch3g1570 | 316 | Gene3D | Phosphorylase Kinase; domain 1 | 32 | 127 | - | - | |
Mch3g1570 | 316 | Gene3D | Transferase(Phosphotransferase) domain 1 | 129 | 315 | - | - | |
Mch3g1570 | 316 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 165 | 177 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Mch3g1570 | 316 | FunFam | Mitogen-activated protein kinase kinase | 29 | 123 | - | - | |
Mch3g1570 | 316 | SUPERFAMILY | Protein kinase-like (PK-like) | 44 | 311 | IPR011009 | - | |
Mch3g1570 | 316 | ProSiteProfiles | Protein kinase domain profile. | 47 | 308 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch3g1570 | 316 | Pfam | Protein kinase domain | 49 | 308 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch3g1570 | 316 | FunFam | Mitogen-activated protein kinase 2 | 128 | 316 | - | - | |
Mch3g1570 | 316 | CDD | PKc_MAPKK_plant_like | 45 | 308 | - | - | |
Mch3g1570 | 316 | SMART | serkin_6 | 47 | 308 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch3g1570 | 316 | ProSitePatterns | Protein kinases ATP-binding region signature. | 53 | 76 | IPR017441 | GO:0005524(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch3g1570 | Mch-Chr3:17718940 | Mch8g1018 | Mch-Chr8:7204547 | 8.39E-101 | dispersed | |
Mch3g1570 | Mch-Chr3:17718940 | Mch2g0539 | Mch-Chr2:3790771 | 3.80E-34 | transposed | |
Mch3g1570 | Mch-Chr3:17718940 | Mch4g2219 | Mch-Chr4:23817061 | 2.25E-33 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77286 | PF00069 | Pkinase | 2.30E-65 | CL0016 | Mch | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch3g1570 | K20604 | - | csv:101203133 | 551.592 |