Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1575 ATGCGGACCCAGATGGGAACTCCTTTGCTTTCTCTGTTTCTTTTCGCTTTCTGTGTTCTACCTCTCAGTGTGAGACCAGATCTTGCTTCCGACACAGCTGCTCTTCTGGCCCTTCGCTCCGCCGTGGGCGGCCGGACTCTCCGCCTTTGGAATGCCACTGACCAGAGCGTCTGCTCTTGGCCTGGGATTCGTTGCGAGGACAATCGCGTCACTGTTCTTCGTCTCCCCGGCGCGGCGCTCTCCGGGGAATTACCGGCGGGCATTTTCGGGAACTTGACTCACCTCCGCACTCTTAGCCTCCGGCTCAACGCATTGTCCGGCCAGCTCCCCTCAGATCTCTCCGCATGCGTTAATCTCCGCAACCTGTATTTGCAAGGTAATGAGTTTTCAGGCCTTGTCCCTGATTTCTTGTTCCGCCTCCATGACCTGGTTCGCCTCAATTTGGCCTCCAATAACTTTTCTGGAGAGATCTCTTCGGGATTTAACAATTTGACCCGTCTTAGGACTCTGTTCCTCGAAAACAATCACCTCGCCGGGTCCATCCCGGACTTGAAGATCCCTCTGGATCAGTTCAATGTTTCCAACAATCAATTAAATGGGTCGGTTCCAGCGGAATTGCAGTCGTTTTCTTCGAGTTCGTTTTTGGGTAATTCTCTCTGTGGGCGCCCCCTCGAGGCTTGCGCTGGAGATATTGCTGTGCCGACAGGGAAGGTTGGGACCAATGGCGGGTCTGGACACAAGAAAAAACTCTCAGGGGGAGCCATTGCAGGGATTATCATTGGATCTGTACTGGGTTTTGTATTGATACTTCTACTCTTAATGCTTCTGTGCCGAAAGAAGAGTGCTAAGAAAACAAGTTCAGTCGATGTAGCCACAGTGAAGCATCCTGAAGTGGAAATTCAGGGTGGAAAGCCAGCTGGGGATGTCGAAAATGGCGGTTACAGTAATGGTTACAGTGTGCCAGCCGCTGCTGCTGCTGCAACAACTGTGGCGGCAGGGGCTGCAAAGGGGGAAGTGAATAACAATGGAGCTGGGTCCAAGAAATTGGTGTTTTTTGGTAATGCTGCGAGGGTGTTCGATTTGGAGGATCTTTTGAGAGCTTCAGCGGAAGTTTTGGGGAAAGGAACCTTTGGGACTGCTTATAAAGCAGTTCTGGAACTGGGTTCTGTGGTGGCTGTGAAGAGGTTGAAGGATGTCACCATAACAGAGAGGGAATTCAGAGAGAAGATTGAAGCTGTTGGATCTATGGATCATGAGAACTTGGTCCCTCTCAGGGCTTACTATTTCAGTAGGGATGAGAAGCTTCTTGTCTATGATTACATGCCCATGGGAAGCTTGTCTGCTCTTTTACATGGAAACAAAGGAGCTGGAAGGACTCCATTGAACTGGGAAATCAGGTCTGGGATTGCCCTTGGAGCCGCCCGTGGCATTGAATATCTGCATTCTCAAGGCCCTAATGTCTCTCATGGCAACATAAAATCGTCCAATATCCTTCTATCCAAATCCTACGATGCCCGAGTCTCCGATTTCGGTTTAGCACATCTCGTTGGACCACCTTCCAGCCCCACCAGAGTTGCTGGATATCGCGCGCCGGAGGTCACTGATCCTCGTAAAGTATCCCATAAGGCTGATGTCTATAGCTTTGGCGTATTGCTCTTGGAGCTTCTGACAGGCAAGGCTCCTACACACTCCCTTCTAAACGAGGAAGGAGTCGACTTACCCAGATGGGTGCAGTCAGTTGTTCGGGAGGAGTGGACTTCCGAAGTTTTCGACCTCGAGCTTCTTAGGTACCAGAACGTCGAGGAGGAGATGGTTCAACTATTGCAGCTTGCAGTCGATTGTGCAGCTCAGTATCCCGATCAACGCCCCACAATGTCCCAAGTCACAAAGCGTATAGAAGAGCTGCGCCAATCCAGCCTTCACGAAGTCGTCGATACACAACCCGATGCTGCTCATGATTCAGACAACGCATCCTCTAGGTGA 1983 50.93 MRTQMGTPLLSLFLFAFCVLPLSVRPDLASDTAALLALRSAVGGRTLRLWNATDQSVCSWPGIRCEDNRVTVLRLPGAALSGELPAGIFGNLTHLRTLSLRLNALSGQLPSDLSACVNLRNLYLQGNEFSGLVPDFLFRLHDLVRLNLASNNFSGEISSGFNNLTRLRTLFLENNHLAGSIPDLKIPLDQFNVSNNQLNGSVPAELQSFSSSSFLGNSLCGRPLEACAGDIAVPTGKVGTNGGSGHKKKLSGGAIAGIIIGSVLGFVLILLLLMLLCRKKSAKKTSSVDVATVKHPEVEIQGGKPAGDVENGGYSNGYSVPAAAAAATTVAAGAAKGEVNNNGAGSKKLVFFGNAARVFDLEDLLRASAEVLGKGTFGTAYKAVLELGSVVAVKRLKDVTITEREFREKIEAVGSMDHENLVPLRAYYFSRDEKLLVYDYMPMGSLSALLHGNKGAGRTPLNWEIRSGIALGAARGIEYLHSQGPNVSHGNIKSSNILLSKSYDARVSDFGLAHLVGPPSSPTRVAGYRAPEVTDPRKVSHKADVYSFGVLLLELLTGKAPTHSLLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDQRPTMSQVTKRIEELRQSSLHEVVDTQPDAAHDSDNASSR 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17751555 17755158 + MC03g1157 Mch3g1575 684478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1575 660 SUPERFAMILY L domain-like 48 212 - -
Mch3g1575 660 ProSiteProfiles Protein kinase domain profile. 366 644 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1575 660 FunFam Probable inactive receptor kinase At1g48480 441 643 - -
Mch3g1575 660 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Mch3g1575 660 Gene3D Transferase(Phosphotransferase) domain 1 441 657 - -
Mch3g1575 660 FunFam pollen receptor-like kinase 1 335 440 - -
Mch3g1575 660 Gene3D Ribonuclease Inhibitor 188 227 IPR032675 -
Mch3g1575 660 FunFam Probable inactive receptor kinase RLK902 28 185 - -
Mch3g1575 660 MobiDBLite consensus disorder prediction 640 660 - -
Mch3g1575 660 CDD STKc_IRAK 372 635 - -
Mch3g1575 660 Pfam Protein kinase domain 370 630 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1575 660 Gene3D Ribonuclease Inhibitor 29 185 IPR032675 -
Mch3g1575 660 SUPERFAMILY Protein kinase-like (PK-like) 370 632 IPR011009 -
Mch3g1575 660 ProSitePatterns Protein kinases ATP-binding region signature. 372 394 IPR017441 GO:0005524(InterPro)
Mch3g1575 660 Gene3D Phosphorylase Kinase; domain 1 334 440 - -
Mch3g1575 660 Pfam Leucine rich repeat 118 177 IPR001611 GO:0005515(InterPro)
Mch3g1575 660 PANTHER OS05G0588300 PROTEIN 9 651 IPR050994 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1575 Mch-Chr3:17751555 Mch8g3115 Mch-Chr8:33507000 1.20E-140 dispersed
Mch11g1251 Mch-Chr11:8895496 Mch3g1575 Mch-Chr3:17751555 8.57E-56 transposed
Mch3g1803 Mch-Chr3:19272850 Mch3g1575 Mch-Chr3:17751555 1.26E-183 transposed
Mch4g1668 Mch-Chr4:19878595 Mch3g1575 Mch-Chr3:17751555 6.47E-144 transposed
Mch8g2297 Mch-Chr8:26130326 Mch3g1575 Mch-Chr3:17751555 3.11E-180 transposed
Mch10g0333 Mch-Chr10:2207522 Mch3g1575 Mch-Chr3:17751555 9.74E-74 transposed
Mch3g1575 Mch-Chr3:17751555 Mch6g0451 Mch-Chr6:3004373 1.02E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77287 PF00069 Pkinase 1.80E-39 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1575 - - - 0.0