Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1589 ATGAAAATGTGGATGATGGGATACAATGACGGCGGAGATAGCTTCAACTTCCCTCCTGATTCCTTCAATGGCCGCAAGCTTAGGCCTTTAATTCCTCGCCCACTCTCTTCTCTTTCCCCCAATACTTCTTCTCCTTCCTCCTCCTCCAACCCTCTCCACACCAACGACTTCTTCTCCCACTTTCATCACATGGCAACGGTGGGCGATCAGAGCAAGAGGGAGTTGAGCAATGGGGCGCCGGTGGTGGTGAGCTCGAGGTGGAATCCAACACCGGAGCAGTTGAGGGTGCTGGAGGAATTGTACCGGCGGGGGACTCGGACGCCGTCGGCGGAGCAAATTCAACATATCACTGCTCAGCTCCGCCGCTACGGTAAGATTGAAGGTAAGAACGTGTTCTACTGGTTCCAGAACCACAAAGCTAGAGAGCGCCAGAAACGCCGCCGCCAAATGGAATCCGCCGCCGACAACTCCGCGGCCGCTCGCGAACTCCAAATCATTGAAGCCAAAGATTCAGGGTCGGGAAGGACAGCGTATGAAGTTGAACAGACCAAAAACTGCACTACACTTCCGGAGGAATCTGTTCCAATTCAACGGGCGGCAAAAGCAAGTGTAATGGCAGGAGATTGCTGCAGGACAGACAATGGATGGCTCCAATTCGAGGAATTGCACCAACGAAGGAACAACAACAATACCTTTGCTGAAAAGAATAATAACATTATTGTTGCATCCTCCTCGTTGCAGATTATGCATTGTGCGGCGGCGCCCCTCGCCGGCACTGCCTCCACCACCACTGCCGCCACGGTCACCACAATATTGCATCAAAAATCCCATCATAATAACAACAACAACAATAATGTTGGTGCACCCTTTATTGTTGGGCTCGAGGAGGAGGAAGAAGAGGAAATTTCAGGAGAAGAAGGAGAAGGAGAAACCCTACAACTTTTTCCTCTGTGCAGTGACACCAGAATTAGCAGAAGCAGAAGCGGTGAGATTATTGGAGGTAAAACAGTAGAAACTTCAGGCATGAATAGTACTAATCTGACTCCACTTCAGTTCTTTGAATTCCTTCCTTTGAAGAATTAG 1083 49.95 MKMWMMGYNDGGDSFNFPPDSFNGRKLRPLIPRPLSSLSPNTSSPSSSSNPLHTNDFFSHFHHMATVGDQSKRELSNGAPVVVSSRWNPTPEQLRVLEELYRRGTRTPSAEQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAADNSAAARELQIIEAKDSGSGRTAYEVEQTKNCTTLPEESVPIQRAAKASVMAGDCCRTDNGWLQFEELHQRRNNNNTFAEKNNNIIVASSSLQIMHCAAAPLAGTASTTTAATVTTILHQKSHHNNNNNNNVGAPFIVGLEEEEEEEISGEEGEGETLQLFPLCSDTRISRSRSGEIIGGKTVETSGMNSTNLTPLQFFEFLPLKN 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17845189 17848821 + MC03g1171 Mch3g1589 684492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1589 360 MobiDBLite consensus disorder prediction 26 55 - -
Mch3g1589 360 CDD homeodomain 86 146 IPR001356 GO:0003677(InterPro)
Mch3g1589 360 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 78 356 IPR044555 GO:0003700(InterPro)|GO:0099402(InterPro)
Mch3g1589 360 MobiDBLite consensus disorder prediction 35 55 - -
Mch3g1589 360 ProSiteProfiles 'Homeobox' domain profile. 90 145 IPR001356 GO:0003677(InterPro)
Mch3g1589 360 Gene3D - 83 145 - -
Mch3g1589 360 Pfam Homeodomain 85 144 IPR001356 GO:0003677(InterPro)
Mch3g1589 360 SMART HOX_1 82 149 IPR001356 GO:0003677(InterPro)
Mch3g1589 360 FunFam WUSCHEL-related homeobox 4 84 151 - -
Mch3g1589 360 SUPERFAMILY Homeodomain-like 85 151 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1580 Mch-Chr1:16974930 Mch3g1589 Mch-Chr3:17845189 1.75E-25 dispersed
Mch3g1589 Mch-Chr3:17845189 Mch8g0670 Mch-Chr8:4770080 6.77E-28 dispersed
Mch1g1910 Mch-Chr1:19009424 Mch3g1589 Mch-Chr3:17845189 5.64E-15 transposed
Mch2g0959 Mch-Chr2:6457637 Mch3g1589 Mch-Chr3:17845189 1.55E-27 transposed
Mch3g1589 Mch-Chr3:17845189 Mch6g0422 Mch-Chr6:2799458 1.89E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43072 PF00046 Homeodomain 8.20E-20 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1589 - - - 0.0