Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1589 ATGAAAATGTGGATGATGGGATACAATGACGGCGGAGATAGCTTCAACTTCCCTCCTGATTCCTTCAATGGCCGCAAGCTTAGGCCTTTAATTCCTCGCCCACTCTCTTCTCTTTCCCCCAATACTTCTTCTCCTTCCTCCTCCTCCAACCCTCTCCACACCAACGACTTCTTCTCCCACTTTCATCACATGGCAACGGTGGGCGATCAGAGCAAGAGGGAGTTGAGCAATGGGGCGCCGGTGGTGGTGAGCTCGAGGTGGAATCCAACACCGGAGCAGTTGAGGGTGCTGGAGGAATTGTACCGGCGGGGGACTCGGACGCCGTCGGCGGAGCAAATTCAACATATCACTGCTCAGCTCCGCCGCTACGGTAAGATTGAAGGTAAGAACGTGTTCTACTGGTTCCAGAACCACAAAGCTAGAGAGCGCCAGAAACGCCGCCGCCAAATGGAATCCGCCGCCGACAACTCCGCGGCCGCTCGCGAACTCCAAATCATTGAAGCCAAAGATTCAGGGTCGGGAAGGACAGCGTATGAAGTTGAACAGACCAAAAACTGCACTACACTTCCGGAGGAATCTGTTCCAATTCAACGGGCGGCAAAAGCAAGTGTAATGGCAGGAGATTGCTGCAGGACAGACAATGGATGGCTCCAATTCGAGGAATTGCACCAACGAAGGAACAACAACAATACCTTTGCTGAAAAGAATAATAACATTATTGTTGCATCCTCCTCGTTGCAGATTATGCATTGTGCGGCGGCGCCCCTCGCCGGCACTGCCTCCACCACCACTGCCGCCACGGTCACCACAATATTGCATCAAAAATCCCATCATAATAACAACAACAACAATAATGTTGGTGCACCCTTTATTGTTGGGCTCGAGGAGGAGGAAGAAGAGGAAATTTCAGGAGAAGAAGGAGAAGGAGAAACCCTACAACTTTTTCCTCTGTGCAGTGACACCAGAATTAGCAGAAGCAGAAGCGGTGAGATTATTGGAGGTAAAACAGTAGAAACTTCAGGCATGAATAGTACTAATCTGACTCCACTTCAGTTCTTTGAATTCCTTCCTTTGAAGAATTAG 1083 49.95 MKMWMMGYNDGGDSFNFPPDSFNGRKLRPLIPRPLSSLSPNTSSPSSSSNPLHTNDFFSHFHHMATVGDQSKRELSNGAPVVVSSRWNPTPEQLRVLEELYRRGTRTPSAEQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAADNSAAARELQIIEAKDSGSGRTAYEVEQTKNCTTLPEESVPIQRAAKASVMAGDCCRTDNGWLQFEELHQRRNNNNTFAEKNNNIIVASSSLQIMHCAAAPLAGTASTTTAATVTTILHQKSHHNNNNNNNVGAPFIVGLEEEEEEEISGEEGEGETLQLFPLCSDTRISRSRSGEIIGGKTVETSGMNSTNLTPLQFFEFLPLKN 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17845189 17848821 + MC03g1171 Mch3g1589 684492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1589 360 MobiDBLite consensus disorder prediction 26 55 - -
Mch3g1589 360 CDD homeodomain 86 146 IPR001356 GO:0003677(InterPro)
Mch3g1589 360 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 78 356 IPR044555 GO:0003700(InterPro)|GO:0099402(InterPro)
Mch3g1589 360 MobiDBLite consensus disorder prediction 35 55 - -
Mch3g1589 360 ProSiteProfiles 'Homeobox' domain profile. 90 145 IPR001356 GO:0003677(InterPro)
Mch3g1589 360 Gene3D - 83 145 - -
Mch3g1589 360 Pfam Homeodomain 85 144 IPR001356 GO:0003677(InterPro)
Mch3g1589 360 SMART HOX_1 82 149 IPR001356 GO:0003677(InterPro)
Mch3g1589 360 FunFam WUSCHEL-related homeobox 4 84 151 - -
Mch3g1589 360 SUPERFAMILY Homeodomain-like 85 151 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1589 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1580 Mch-Chr1:16974930 Mch3g1589 Mch-Chr3:17845189 1.75E-25 dispersed
Mch3g1589 Mch-Chr3:17845189 Mch8g0670 Mch-Chr8:4770080 6.77E-28 dispersed
Mch1g1910 Mch-Chr1:19009424 Mch3g1589 Mch-Chr3:17845189 5.64E-15 transposed
Mch2g0959 Mch-Chr2:6457637 Mch3g1589 Mch-Chr3:17845189 1.55E-27 transposed
Mch3g1589 Mch-Chr3:17845189 Mch6g0422 Mch-Chr6:2799458 1.89E-54 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch3g1589 . 3 192 Wox Gene Family AT3G18010 54.9 4.5e-46 182.2
Mch8g0670 . 5 163 Wox Gene Family AT1G46480 65.5 8.6e-52 200.3
Mch3g1589 . 3 192 Wox Gene Family AT3G18010 54.9 4.5e-46 182.2
Mch8g0670 . 5 163 Wox Gene Family AT1G46480 65.5 8.6e-52 200.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004252 3 1 2 3 2 1 2 1 1 1 1 1 3 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43072 PF00046 Homeodomain 8.20E-20 CL0123 Mch TF