Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1592 ATGAAGAACCTCCTCAAGAAGTTCCATATCATGTCCAGTAGTCAGCCTGACGACACAGCAGAAGGGTCCACTTCATCGAGGGGCAGTAAATTACTTGAGGCTCCATCGCCTGATAAGCTGCCATCTCGCTCTCGGCCGGCCCATTTTAATTCGGAGCATAAACCCTTCTCGGGGATATCCGGTTGGTTGAACTCTGTTGCAAATAGACGTAGCCTCAGCCCTCCATCATCTTCGAATCCCACAGCAGGAGAGATAATGGAGCCTTCTGATTCAGTATCTAGCAGAGACGCTGCCATGGATACATCAAGGCATGATTCAGGGTCGAGTAACTCGAGGGATCCTGATATAGAGGAAGAGTATCAGATACAGCTTGCTTTGGAAATGAGTGCCAGAGAGGATCCTGAGGCTGCTCAGATTGAGGCAGTGAAGCAGATCAGTTTGGGCTCATGTGATCCTGATAACACTCCAGCTGAAGTTATTGCCTTCAGATACTGGAATTACAATTCTCTTAGCTATGATGACAAGATCTTGGATGGCTTCTATGACCTATATGGAGTCTTCACTGAAGCCACCTCAGAAAGAATGCCTTCCCTAGTTGATCTGCAAGGAACACCAATGTCTGACAGTGTCACTTGGGAAGCAGTTGTGATCAATAAAGCTGCTGATGCTAACTTATTGAAACTTGAACAGACGGCATTGGAGATGGCCATCAAGATGAGGTCTGAATCTCCAGTTTCTGTCAATAGTTATTTGGTACGGAAGCTTGCTGTTTTAGTTTCTGATCATATGGGGGGAGCAGTGGGGGATCCTGAAAAGATGTTGAGAAAATGGAGAAGTCTTAGTAACAGCTTGAAAGCAACCCTTGGTAGTATGGTTTTGCCTCTTGGCTCCCTTACTGTTGGGTTGGCTCGTCATCGTGCATTGTTATTCAAGCTTTTGGCGGATGGCGTGGGTATCCCTTGTAGGTTGGTCAAAGGACCACAGTACACAGGTTCTGATGATGTGGCAATGAACTTCGTAAAGATCGATGGTGGAAGGGAGTACATTGTGGATTTAATGGCAGATCCTGGTACACTTATTCCATCTGATGCTGCTGGATCACATGTTGAGTATGATGAATCCCCTCTTTCAGCCAGTCCACTTTCTAGAGATGTTGATTCCTCTCAGGCAGCCTCTTCAAGCAGTGGAGTTGGCAGTTCATTGGAGGAAAACTCAGATTTTGGTATATCAGATAGGAAACCGAAGTCCCAGAATCTCAGTGCCACAAAGGAATACGATCCTCCCAATTTTGACAAGGGGCTATCACGCGATTTTGCTAGCAAACCAAATTATCCTGGCATGCACGTGAGATCCCCTTCTTGGACCGAGGGTGTTAGTTCACCTGCAGTGCGCAGAATGAAAGTAAAGGATGTTTCACAGTACATGATTGATGCTGCCAAAGAGAATCCACGATTGGCTCAGAAGCTTCATGATGTGTTGCTCGAAAGTGGTGTAGTTGCTCCCCCTAACTTGTTTACTGAGGCATATCCTGATCAAATAGATGTTATCGTTGAGTCGAGGTCACCAGTTGAAGACAAGGATGAAAGTAGAAAGGTACCTGATCTCTGCGAAAGTGTGGATAGGAAAGATCCTCGCCCAGCAAACTTTTTGCCTCCCTTGCCTCAGCACAGACTACATTCTAAAGCAAGTCCTACACACGGACAACAACAGCATCTTAAACCCCTGGAACTCAACCCTTCTCTTGATTCAAGAGAAACAGCTGGACAACCCATAGCCTTACCATTTGAGGTAACTCCAGTGAAGTATGGGAGAAATGTACCTGTTGCTGCTGCAGCAGCAGCAGCTGCAGCTGTTGTTGCATCATCAATGGTAGTGGCTGCAGCAAAGAGTACTGATGCAAATCTTGAAATTCCTGTAGCAGCTGCTGCCACTGCCACCGCTGCTGCAGTGGTTGCAACAACTGCAGCAGTCAACAAGCAGTATGAGCAGGTTGAAGCTGATGCTGCTCTTTATGAGCAGCGTGGAAGTGGAGGTAGGGAGCATGACGCTTGTGGAGAACATTCAGAGGGTGAACGAATATCAGATAGATCAGCAGGGAATGAAAGCACAAAATCTGATATTACACTTGATGACGTTGCAGAATGTGAGATCCCATGGGAAGAAATATCCGTGGGAGAGCGTATTGGACTTGGGTCATATGGGGAGGTCTATCGTGGAGATTGGCATGGAACTGAGGTAGCTGTGAAGAGGTTTTTAGACCAGGATATTTCTGGTGAATCTCTTGAAGAATTCAAAAGTGAGGTTCGAATTATGAAAAGGCTTCGACATCCAAATGTAGTTCTCTTCATGGGAGCTGTGACACGTGCTCCCAATCTTTCAATTGTTACAGAATTTCTTCCCAGAGGTAGCTTGTACAGGTTAATTCATCGGCCTAACAACCAATTAGATGATCGAAAGCGATTGAGGATGGCCCTTGATGCAGCTCGGGGAATGAATTATTTGCATACTTGCACACCTGTTATTGTACATCGTGATTTGAAGTCCCCAAATCTTCTTGTTGACAAAAATTGGGTTGTGAAGGTATGTGATTTTGGTTTATCAAAAATGAAGCATAGCACATTTCTTTCTTCAAGGTCAACAGCTGGAACGGCTGAGTGGATGGCTCCAGAAGTGCTAAGAAATGAACCTTCAGATGAAAAGTGTGACGTGTATAGTTATGGAGTCATACTATGGGAGCTTTGTACGATGCAACAACCATGGGGTGGAATGAACCCGATGCAGGTAGTTGGTGCGGTTGGGTTTCAGCATCGCCGTCTTGACATCCCAGATAATATGGATCCTGCCATTGCTGACATTATTCGGAAGTGCTGGCAGACAGATCCAAAGTTGAGACCGTCGTTTGGCGAGATCATGGCTGCGCTGAAGCCGCTGCAGAAGCCATCATCGAGTGCTCAAGTACCGAGACCAAATGCTTCTGCAGGTAGTGGCCGTGAGAAGGCTTGA 3003 46.19 MKNLLKKFHIMSSSQPDDTAEGSTSSRGSKLLEAPSPDKLPSRSRPAHFNSEHKPFSGISGWLNSVANRRSLSPPSSSNPTAGEIMEPSDSVSSRDAAMDTSRHDSGSSNSRDPDIEEEYQIQLALEMSAREDPEAAQIEAVKQISLGSCDPDNTPAEVIAFRYWNYNSLSYDDKILDGFYDLYGVFTEATSERMPSLVDLQGTPMSDSVTWEAVVINKAADANLLKLEQTALEMAIKMRSESPVSVNSYLVRKLAVLVSDHMGGAVGDPEKMLRKWRSLSNSLKATLGSMVLPLGSLTVGLARHRALLFKLLADGVGIPCRLVKGPQYTGSDDVAMNFVKIDGGREYIVDLMADPGTLIPSDAAGSHVEYDESPLSASPLSRDVDSSQAASSSSGVGSSLEENSDFGISDRKPKSQNLSATKEYDPPNFDKGLSRDFASKPNYPGMHVRSPSWTEGVSSPAVRRMKVKDVSQYMIDAAKENPRLAQKLHDVLLESGVVAPPNLFTEAYPDQIDVIVESRSPVEDKDESRKVPDLCESVDRKDPRPANFLPPLPQHRLHSKASPTHGQQQHLKPLELNPSLDSRETAGQPIALPFEVTPVKYGRNVPVAAAAAAAAAVVASSMVVAAAKSTDANLEIPVAAAATATAAAVVATTAAVNKQYEQVEADAALYEQRGSGGREHDACGEHSEGERISDRSAGNESTKSDITLDDVAECEIPWEEISVGERIGLGSYGEVYRGDWHGTEVAVKRFLDQDISGESLEEFKSEVRIMKRLRHPNVVLFMGAVTRAPNLSIVTEFLPRGSLYRLIHRPNNQLDDRKRLRMALDAARGMNYLHTCTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSKMKHSTFLSSRSTAGTAEWMAPEVLRNEPSDEKCDVYSYGVILWELCTMQQPWGGMNPMQVVGAVGFQHRRLDIPDNMDPAIADIIRKCWQTDPKLRPSFGEIMAALKPLQKPSSSAQVPRPNASAGSGREKA 1000
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17863029 17874599 - MC03g1174 Mch3g1592 684495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1592 1000 SMART serkin_6 722 977 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1592 1000 FunFam Serine/threonine-protein kinase isoform 1 713 800 - -
Mch3g1592 1000 MobiDBLite consensus disorder prediction 674 699 - -
Mch3g1592 1000 ProSiteProfiles Protein kinase domain profile. 722 978 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1592 1000 FunFam Serine/threonine-protein kinase CTR1 801 984 - -
Mch3g1592 1000 ProSitePatterns Serine/Threonine protein kinases active-site signature. 841 853 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1592 1000 MobiDBLite consensus disorder prediction 57 88 - -
Mch3g1592 1000 MobiDBLite consensus disorder prediction 1 116 - -
Mch3g1592 1000 MobiDBLite consensus disorder prediction 974 1000 - -
Mch3g1592 1000 MobiDBLite consensus disorder prediction 519 571 - -
Mch3g1592 1000 Gene3D Transferase(Phosphotransferase) domain 1 801 986 - -
Mch3g1592 1000 MobiDBLite consensus disorder prediction 673 707 - -
Mch3g1592 1000 PANTHER SERINE-THREONINE PROTEIN KINASE 73 975 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Mch3g1592 1000 Gene3D Phosphorylase Kinase; domain 1 715 799 - -
Mch3g1592 1000 SUPERFAMILY Protein kinase-like (PK-like) 705 972 IPR011009 -
Mch3g1592 1000 PRINTS Tyrosine kinase catalytic domain signature 796 809 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1592 1000 PRINTS Tyrosine kinase catalytic domain signature 882 892 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1592 1000 PRINTS Tyrosine kinase catalytic domain signature 835 853 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1592 1000 PRINTS Tyrosine kinase catalytic domain signature 901 923 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1592 1000 PRINTS Tyrosine kinase catalytic domain signature 945 967 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1592 1000 MobiDBLite consensus disorder prediction 380 424 - -
Mch3g1592 1000 MobiDBLite consensus disorder prediction 97 116 - -
Mch3g1592 1000 MobiDBLite consensus disorder prediction 519 544 - -
Mch3g1592 1000 ProSitePatterns Protein kinases ATP-binding region signature. 728 749 IPR017441 GO:0005524(InterPro)
Mch3g1592 1000 Pfam Protein tyrosine and serine/threonine kinase 723 974 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1592 1000 Pfam Ethylene-responsive protein kinase Le-CTR1 157 360 - -
Mch3g1592 1000 CDD STKc_MAP3K-like 728 974 - -
Mch3g1592 1000 MobiDBLite consensus disorder prediction 370 445 - -
Mch3g1592 1000 MobiDBLite consensus disorder prediction 8 31 - -
Mch3g1592 1000 Coils Coil 654 674 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0410 Mch-Chr11:2575785 Mch3g1592 Mch-Chr3:17863029 5.23E-227 dispersed
Mch1g0900 Mch-Chr1:12340518 Mch3g1592 Mch-Chr3:17863029 6.98E-133 dispersed
Mch2g0661 Mch-Chr2:4526660 Mch3g1592 Mch-Chr3:17863029 7.64E-78 dispersed
Mch3g1592 Mch-Chr3:17863029 Mch6g1662 Mch-Chr6:18444872 6.66E-197 dispersed
Mch3g1592 Mch-Chr3:17863029 Mch5g1658 Mch-Chr5:17396094 7.67E-134 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77288 PF07714 PK_Tyr_Ser-Thr 4.40E-67 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1592 - - - 0.0