Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1593 ATGGATCGCTTCAATAAGGGCGAGAAGCAATCAGAATTTTTCACCGAGTATGGAGAAGCAAGCCGATACCAAATTCAAGAAGTTATCGGGAAAGGAAGCTATGGAGTTGTTGGTTCTGCAATTGACACCCAGACCGGTGAAAGAGTTGCCATCAAGAAAATTAATGATGTTTTCGAGCATGTATCTGATGCCATACGCATCCTAAGAGAAATTAAGCTTCTGCGGATGCTTCATCATCCGAATATTGTAGAGATAAAGCATATCATGCTTCCTCCCTCACAACGAGAATTCAAAGATATATATATTGTTTTTGAGTTGATGAAGTCTGACCTTCACCAAGTAATTAGGACAAACAATGTTCTTTCTCCGAAGCAGCATAAATTTTTCTTGTTCCAGCTTCTTAGTGGTCTAAAATATATACATGCAGCAAATGTCCTTCATCGAGATTTAAAGCCGAAAAACATACTTGCAAATGCTGACTGCAGACTGAAGATATGTGATTTTGGACTTGCTCGCGTTTCTTTTGGGGATGCGCCGTCTACTATTTTCTGGACAGATTATGTCGCAACTCGTTGGTATCGTGCTCCAGAACTCTGTGGATCATTTTTCTCGAAATACACCCCTGCTATAGATATATGGAGTATCGGATGCATATTTGCAGAAATGCTTACGGGAAAACCGTTGTTTCCTGGAAAAAATGTGGTTCACCAATTAGATCTAATTACCGATCTGTTTGGCACTCCTGATGCTGAATCCATAGCGAAGATTCGGAATGAGAAGGCAAGAAGATATCTTGGAAACATGCGTAAAAAACCACCAGTTCCATTCTCTCGAAAGTTCCCTAATGTCGATCCATTGGCACTTACTTTGCTGGAACGCCTCCTGGCATTTGATCCGAAAAGACGTCTAACAGCTGAAGAGGCACTATCTGATCCTTACTTCAATGGTATGGAAAAAGCAGACCTTGAAGCTCCTGTTCAACCAATTTCAAAACTTGAGTTTGAGTTTGAGAGGAGGAAATTGTCAAAAGATGATGTTAGAGAGTTAATTTATGCAGAGATCTTAGAGTATCATCCCCAGATGCGTCAGGAGCGCCAACGCGATGGAGATCAAACTACCTTTATGTATCCAAGTGGCGTTGATCGATTTAGGCTTCAGTTTGCGCATCTGGAAGAGCACCATGTCAAAGGTGAAAGAAGTGCTCCACTTCAAAGGCAGCATGCTTCTTTACCCCGGGAGCGGGTTCCTGAACCTGAGCACAACAACGCTGAGAAGAACACTGATTTTGAAAGGGGGAACGACAAGAGTGCTCACCTCTTGAAAAGTGCTAGCATTAGTGCATCAAGGTGTCTTGGGGTAATACCAAAAGAGAAGTCTGAGACGGACGAAGGAAGTTCTGAAGCAAAAAATGAAGCAGCGGATGGCTCGTCTCAAAAGATCGCAGTCCTTCAGACTTGA 1458 42.46 MDRFNKGEKQSEFFTEYGEASRYQIQEVIGKGSYGVVGSAIDTQTGERVAIKKINDVFEHVSDAIRILREIKLLRMLHHPNIVEIKHIMLPPSQREFKDIYIVFELMKSDLHQVIRTNNVLSPKQHKFFLFQLLSGLKYIHAANVLHRDLKPKNILANADCRLKICDFGLARVSFGDAPSTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLITDLFGTPDAESIAKIRNEKARRYLGNMRKKPPVPFSRKFPNVDPLALTLLERLLAFDPKRRLTAEEALSDPYFNGMEKADLEAPVQPISKLEFEFERRKLSKDDVRELIYAEILEYHPQMRQERQRDGDQTTFMYPSGVDRFRLQFAHLEEHHVKGERSAPLQRQHASLPRERVPEPEHNNAEKNTDFERGNDKSAHLLKSASISASRCLGVIPKEKSETDEGSSEAKNEAADGSSQKIAVLQT 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17881862 17887748 + MC03g1175 Mch3g1593 684496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1593 485 Gene3D Transferase(Phosphotransferase) domain 1 109 337 - -
Mch3g1593 485 SUPERFAMILY Protein kinase-like (PK-like) 19 317 IPR011009 -
Mch3g1593 485 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 20 355 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Mch3g1593 485 MobiDBLite consensus disorder prediction 455 469 - -
Mch3g1593 485 FunFam Mitogen-activated protein kinase 338 360 - -
Mch3g1593 485 ProSitePatterns Protein kinases ATP-binding region signature. 29 53 IPR017441 GO:0005524(InterPro)
Mch3g1593 485 MobiDBLite consensus disorder prediction 410 437 - -
Mch3g1593 485 MobiDBLite consensus disorder prediction 470 485 - -
Mch3g1593 485 FunFam Mitogen-activated protein kinase 11 129 - -
Mch3g1593 485 ProSitePatterns MAP kinase signature. 58 161 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1593 485 CDD STKc_TDY_MAPK 22 359 - -
Mch3g1593 485 Pfam Protein kinase domain 23 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1593 485 Gene3D Phosphorylase Kinase; domain 1 39 360 - -
Mch3g1593 485 SMART serkin_6 23 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1593 485 MobiDBLite consensus disorder prediction 394 485 - -
Mch3g1593 485 ProSiteProfiles Protein kinase domain profile. 23 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1593 485 FunFam Mitogen-activated protein kinase 109 337 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1593 Mch-Chr3:17881862 Mch9g1264 Mch-Chr9:14505988 6.42E-232 dispersed
Mch3g1593 Mch-Chr3:17881862 Mch6g0417 Mch-Chr6:2759523 5.32E-258 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77289 PF00069 Pkinase 6.20E-69 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1593 - - - 0.0