Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1617 AAGCGATACAGTTACTCAAAGCTGAAGAAAATTACATGCTCCTTCAAGAACAAGCTTGGACAAGGAGGATTTAGCACTGTCTACAAAGGAAAGTTATCAGATGGTCATGATGTGGCCGTGAAACTTTTGAATGACAAAGAGAACAGCCAAGACTTCATGAACGAAGTTATTAGCATCACCAGAACTTCGCACGTAAACATAGCCACGCTCTTGGGTTTCTGCTACGAGCGCAACAAAAGAGCTCTAATTTATGAGTATATGCCAAAAGGGTCATTAGAAAAGTATATATTTAACAAAAGGTTGCAAAAAAATGAGGTGGTGTTGGATTGGAACACGTTATACAGCATCATAATCGGTGTGGCTCGAGGGTTAGAGTACTTACATCGTGGCTGCAACACAAGGATTTTGCATTTTGACATAAAACCACACAACATTCTTCTGGACAAGAACTTCTGCCCCAAGATCTCAGACTTTGGACTTGCCAAGCAATGCAAGGCCAAAGAGAGTCACGTATCGATGACAGGTGTAAAGGGGACGGCAGGATTCATGGCACCGGAAGTGATATTTAAAAATTATGGGAAGGTTTCCCACAAGGCTGATGTTTATAGCTACGGAATGCTGGTAACTGAAATGGTGGGTGAAAGAAAGAATCGTCGGAATGAAGGAGTGGAGGAGAGCAGTGAAGAGTATTTTCCTGATTGGATATACAATGATCTAAAAGATGGAGGGCTGTGGTGGGGGAACACAGAGGAAGAAGAAGAAATGGCAAGAAAAATAATTATTGTGGGGTTGCATTGTATTCAGACATTGCCAGACGATAGGCCATCGATGAGTGATGTGGTGGCTATGTTGGAAGGGAGTGGTGATGGCTTACAAATTCCGCCCAAACCGACCTTGTTTGGACCTCCTACAACTTCAACTACGCTGCCCCATCCTTCTTCTTCTTTCTCTTATTCTTCATCAACCTCTGTGAGTTACAATTGCGGAGAATTGGTTAACATCACGTATCCATTTTGGGGAAATGAGAGGCCGGAATTGTGCGGGCGGCGAGAATTGGAGCTCAAATGCAAAAACAAGCGAACCACCACTATTGAAATCAATTCTGTGGAGTATAACGTTCTGGAAATAGAGCAGTCGTATAATGGAATGAGGATCGCAAGATCAGACGTGTCCGAGAGTGTATGCCCCAAAAATCAGATGAAAACTGGGAGTGGGATTCCGGAATTGGGATATCCGTTCGAAAATTTTTGGAACAGTGGGAATAATATCTCCCTGTGGTACAATTGCTCGGTGCAAAAGGGAATTTCGGAGAGTTACAGATTCTGGTGTGGGGGGGAAAAGGAGGGGAGAGTGAATTATGGGTTTGGACCAATGGATGCGAATTTGACACTAAATTTGGAAGGCCAAGTGTGTGAAATGAACATCAATGTTACGGCGGATAGCTTGACAGGGGAAGGTGGAAATAACAGGACGGCGGTGCTGGAGAACTCCGTGAGACAAGGGTTCTTTGTGAGTTACTTCCAGGAGAAGAAGTGGTATACGATTGCCTGCGAAGTATGCAATGACGACGGCGGAATTTGCGGAGGAAACGCGACGTACGCATTTTACTGCACTTGTGCAGGCGGAGATGCACATCCCTACCGCTGCTTACCTACTACTCCTCCTCCTCCTTCTCCTCCTCCTTCAATTGCAATTGCTACTGGATGCGTCATTTTGATGATCTCCATCATCATCTTCATCTACCACACATCTCAAACATCAAACAGAGACAACATTGAAGAAATTATAAAGACATATTCCACACGAACACCCAAGCGGTACAGTTACTCACAGCTAAAGAAAATCACAGACTCCTTCAACAACCAGCTTGGCCAGGGAGGATTTAGCACCGTCTACAAAGGAACTTTACCGGATGGACGCCAAGCGGCGGTGAAACTTTTGAACGAATCCAGAGATCAAACTGGTCAAGATTTTATGAATGAAGTTGTTAGCATCACCAGAACTTCGCATGTGAACGTAGTCACTCTCTTGGGTTTCTGCTACGAGCGCGACAAAAGAGCTCTGATTTATGAGTATATGCCAAAAGGGTCATTAGATAAGTACATATTTAACAAAGGGTTGCAGGAAAAAGATGTTGCGGTGTTGCACTGGAACACGCTTTATAGCATCATTATGGGGGTGGCTCGAGGGTTAGACTACTTGCATCGCGGCTGCAGCACAAGGATCGTGCATTTTGACATAAAACCACACAACATTCTTCTGGACGATGAGTTCTGCCCCAAGATCTCAGACTTTGGGCTTGCCAAGCAATGCAGGGCTACAGAGAGTTACGTGTCGGTGACGGGCATGAAGGGGACGGCAGGATTCATGGCGCCGGAAGTAATGTTTAGAAATGTTGGGAAGGTCTCCCACAAGTCTGATGTTTATAGTTATGGGATGTTGGTTCTTCAGATGGTGGGTGAAAGAAAGAGCCAAAATGAAGAGCAGTTTCCTGATTGGATATACAAGGATCTTGCAGAGAGTGAGAAAGATGGAGGGCGTGGCCTACGGTGGGGCAACACCGAGGAAGAAGAAGAAAAAGCAAGAAAATTGATTGGTGTGGGTCTGTGTTGCATTCAGTCGTTGCCGGAGGAGAGGCCGTCGATGAGTGATGTGGTGGCGATGTTGGAAGGCAGTGTTGATGGCTTACACATTCCACCAAAATCGGCCTTGTTTGGACCTCCAGCGGCTCAGACGTCAACGACCATTCTCACTGATTGCCCTTTTAACTGA 2772 45.35 KRYSYSKLKKITCSFKNKLGQGGFSTVYKGKLSDGHDVAVKLLNDKENSQDFMNEVISITRTSHVNIATLLGFCYERNKRALIYEYMPKGSLEKYIFNKRLQKNEVVLDWNTLYSIIIGVARGLEYLHRGCNTRILHFDIKPHNILLDKNFCPKISDFGLAKQCKAKESHVSMTGVKGTAGFMAPEVIFKNYGKVSHKADVYSYGMLVTEMVGERKNRRNEGVEESSEEYFPDWIYNDLKDGGLWWGNTEEEEEMARKIIIVGLHCIQTLPDDRPSMSDVVAMLEGSGDGLQIPPKPTLFGPPTTSTTLPHPSSSFSYSSSTSVSYNCGELVNITYPFWGNERPELCGRRELELKCKNKRTTTIEINSVEYNVLEIEQSYNGMRIARSDVSESVCPKNQMKTGSGIPELGYPFENFWNSGNNISLWYNCSVQKGISESYRFWCGGEKEGRVNYGFGPMDANLTLNLEGQVCEMNINVTADSLTGEGGNNRTAVLENSVRQGFFVSYFQEKKWYTIACEVCNDDGGICGGNATYAFYCTCAGGDAHPYRCLPTTPPPPSPPPSIAIATGCVILMISIIIFIYHTSQTSNRDNIEEIIKTYSTRTPKRYSYSQLKKITDSFNNQLGQGGFSTVYKGTLPDGRQAAVKLLNESRDQTGQDFMNEVVSITRTSHVNVVTLLGFCYERDKRALIYEYMPKGSLDKYIFNKGLQEKDVAVLHWNTLYSIIMGVARGLDYLHRGCSTRIVHFDIKPHNILLDDEFCPKISDFGLAKQCRATESYVSVTGMKGTAGFMAPEVMFRNVGKVSHKSDVYSYGMLVLQMVGERKSQNEEQFPDWIYKDLAESEKDGGRGLRWGNTEEEEEKARKLIGVGLCCIQSLPEERPSMSDVVAMLEGSVDGLHIPPKSALFGPPAAQTSTTILTDCPFN 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18020547 18025039 + MC03g1194 Mch3g1617 684520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1617 923 ProSiteProfiles Protein kinase domain profile. 13 299 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1617 923 Gene3D Transferase(Phosphotransferase) domain 1 693 896 - -
Mch3g1617 923 SUPERFAMILY Protein kinase-like (PK-like) 593 890 IPR011009 -
Mch3g1617 923 ProSitePatterns Serine/Threonine protein kinases active-site signature. 742 754 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1617 923 Pfam Wall-associated receptor kinase galacturonan-binding 327 387 IPR025287 GO:0030247(InterPro)
Mch3g1617 923 FunFam PR5-like receptor kinase 87 296 - -
Mch3g1617 923 FunFam S-receptor-like serine/threonine-protein kinase 585 692 - -
Mch3g1617 923 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1617 923 ProSitePatterns Protein kinases ATP-binding region signature. 623 645 IPR017441 GO:0005524(InterPro)
Mch3g1617 923 ProSiteProfiles Protein kinase domain profile. 617 893 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1617 923 SMART serkin_6 617 889 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1617 923 SMART serkin_6 13 284 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1617 923 FunFam PR5-like receptor kinase 693 900 - -
Mch3g1617 923 Pfam Protein kinase domain 620 887 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1617 923 Pfam Protein kinase domain 15 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1617 923 CDD STKc_IRAK 623 891 - -
Mch3g1617 923 SUPERFAMILY Protein kinase-like (PK-like) 4 285 IPR011009 -
Mch3g1617 923 Gene3D Phosphorylase Kinase; domain 1 1 86 - -
Mch3g1617 923 Gene3D Phosphorylase Kinase; domain 1 590 692 - -
Mch3g1617 923 ProSitePatterns Protein kinases ATP-binding region signature. 19 41 IPR017441 GO:0005524(InterPro)
Mch3g1617 923 Pfam Wall-associated receptor kinase C-terminal 466 541 IPR032872 -
Mch3g1617 923 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 304 IPR045874 GO:0004672(InterPro)
Mch3g1617 923 Gene3D Transferase(Phosphotransferase) domain 1 87 289 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0621 Mch-Chr11:3996378 Mch3g1617 Mch-Chr3:18020547 1.11E-79 dispersed
Mch3g1617 Mch-Chr3:18020547 Mch5g1968 Mch-Chr5:19508354 9.16E-79 dispersed
Mch3g1617 Mch-Chr3:18020547 Mch3g1625 Mch-Chr3:18060927 2.70E-54 proximal
Mch3g1616 Mch-Chr3:18015595 Mch3g1617 Mch-Chr3:18020547 9.79E-142 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77292 PF00069 Pkinase 1.40E-46 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1617 - - - 0.0