Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1625 ATGCTTTCGATGGGGCTTTTGTCATCTCTCTGTGCCTGCTTGCAGAAGAGACTTAAAGCAGCTAATTCAGGAGGTGCGGATGAAGCAGATGATGAAGATGTGTCCTCGGGCATCTTCTTTGAACTCAGCGCTCTGCAAATTGCTACCAATTACTTCTCAGAGGCCAATAAGCTCGGACATGGAGGGTTTGGACCGGTCTACAAGGGGTTAATGCCAAATGGGCAACAAGTAGCAGTCAAGAAGCTATCAGTAGATTCAAGACAAGGAGTGAGGCAATTTAGTAATGAAGTGAAACTTCTACTGAGAATTCAGCACAGAAATTTGGTTATTTTGTTGGGCTGTTGCATTGAAGGACCTGAAAAGATGCTTGTATATGAGTACCTACCAAACAAAAGCCTTGATTACTTTCTCTTCGATAAAAATAAATCACCATCCCTAGATTGGACAACACGGTTCCATATAATTGCTGGTATTGTGAGAGGTCTTCTCTACTTGCATGAAGAGGCTCCTGCAAGAATTATACATAGAGATGTCAAAGCCAGTAACATATTACTAGACGATCAATTGAATCCAAAAATCTCAGATTTCGGATTGGCGCGACTTTTTCCCGGGGATGACACCCATTTGAATACATTTAAGATCGCCGGTACTCATGGCTATATGGCACCCGAATATGCAATTCATGGATATTTGTCTGTGAAGAGTGATGTTTTCAGTTTTGGCATCTTGGTATTAGAGATTGTTAGTGGAAGGAAGAATCATGACAGTCGGCTCGGCGTACAAAAGGCCGACCTCTTGGGATATGCATGGTTGCTTTATCAAGAAGGGAAGATTTTAGAATTAGTTGATCAAAGCCTTACAAAATGCAATGCAGATGAGGCAGCTATGTGCATTCAGTTGGGGTTGTTATGTTGCCAAGCGAGTGTTCCAGAAAGGCCTGATATGAACACTATTCATCTCATGCTTTCCAGTGACTCGTTCACATTGCCGCGACCTGGGAAACCTGGAATTCAAGGTCGAGGAGCACGTTGGACGACTACCTCTACTTCAGCTTTCACCAATACAAATCCTAGTACACAAACTGTCGTTACCAAAGCTTCTGCTGCTAGTAGTTTCGTGGAGGATTATTCAAGAAATTCCATGTCTATTTCATCTATTGATGAAGGCAGATGA 1173 42.54 MLSMGLLSSLCACLQKRLKAANSGGADEADDEDVSSGIFFELSALQIATNYFSEANKLGHGGFGPVYKGLMPNGQQVAVKKLSVDSRQGVRQFSNEVKLLLRIQHRNLVILLGCCIEGPEKMLVYEYLPNKSLDYFLFDKNKSPSLDWTTRFHIIAGIVRGLLYLHEEAPARIIHRDVKASNILLDDQLNPKISDFGLARLFPGDDTHLNTFKIAGTHGYMAPEYAIHGYLSVKSDVFSFGILVLEIVSGRKNHDSRLGVQKADLLGYAWLLYQEGKILELVDQSLTKCNADEAAMCIQLGLLCCQASVPERPDMNTIHLMLSSDSFTLPRPGKPGIQGRGARWTTTSTSAFTNTNPSTQTVVTKASAASSFVEDYSRNSMSISSIDEGR 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18060927 18065947 + MC03g_new0424 Mch3g1625 684528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1625 390 FunFam Cysteine-rich receptor-like protein kinase 2 16 127 - -
Mch3g1625 390 ProSiteProfiles Protein kinase domain profile. 52 322 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1625 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1625 390 SMART serkin_6 52 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1625 390 CDD STKc_IRAK 58 322 - -
Mch3g1625 390 SUPERFAMILY Protein kinase-like (PK-like) 36 322 IPR011009 -
Mch3g1625 390 Gene3D Transferase(Phosphotransferase) domain 1 128 328 - -
Mch3g1625 390 Pfam Protein tyrosine and serine/threonine kinase 55 319 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1625 390 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 19 336 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Mch3g1625 390 FunFam Cysteine-rich receptor-like protein kinase 41 128 328 - -
Mch3g1625 390 Gene3D Phosphorylase Kinase; domain 1 15 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1625 Mch-Chr3:18060927 Mch4g0203 Mch-Chr4:1342039 2.34E-111 dispersed
Mch9g0239 Mch-Chr9:1808550 Mch3g1625 Mch-Chr3:18060927 1.42E-56 dispersed
Mch3g1617 Mch-Chr3:18020547 Mch3g1625 Mch-Chr3:18060927 2.70E-54 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77293 PF07714 PK_Tyr_Ser-Thr 8.60E-45 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1625 - - - 0.0