Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1629 ATGGCTGAACTCACTGCAAACTTCCAGAGCTTGAAGCCATCATCTTCTCCTCTAATGGATATGGATCCCAACCAAAATCCAAGTCTACTCCATAACCCAAATGTGAATTTTCTTGACACCATCCCTGTTCTGTTCAATGACAGTTTCTTCGGCAACCAAGCTCCTCCCAGATTCCTGGAAACTTGGGGAGAAAATTTCCCAGGAGTTTTCTGTCAAGCCAATCAGATCACAGCACCCGATTTTCCATCTGGAAATGACCTCCATGAGACCAAAAAAAGAAAGCTTGAAACTGATGCATCTGAATGCAGCTCTGGCAACTCGACCCCTCAGATTTCTGAAACTGGGGTCAAGACTAAAAATAGCTCCAGTAAAGGAAAGCGGTCGAAAAAGGGCGGCGAAAACGACGACGAGAAACCGAGGGAAGTGGTTCATGTTAGAGCCAGAAGAGGTCAGGCAACAGACAGTCACAGTGTAGCAGAAAGGATAAGAAGAGGAAAAATCAATGAAAGATTGAGATGCTTACAAGACATTGTCCCTGGATGCTATAAGACAATGGGGATGGCAGTGATGTTGGATGAGATAATTAATTATGTGCAGTCTTTGCAGAACCAAGTTGAGTTTCTTTCTATGAAACTCACAGCTGCAAGCTCCTTTTATGACTTCAACTCAGACTCAGATTCTGGAGACAAAATGAAGGTGAAGGAATTGAGAGAGGGAAATGGAGAATTGTTGATTTCATCGACCCAATTTGGTCCCTTTGACTTGAGCTTCGGTCCATATTCTACGTTGCCATTCAACGGCATGTGA 807 43.74 MAELTANFQSLKPSSSPLMDMDPNQNPSLLHNPNVNFLDTIPVLFNDSFFGNQAPPRFLETWGENFPGVFCQANQITAPDFPSGNDLHETKKRKLETDASECSSGNSTPQISETGVKTKNSSSKGKRSKKGGENDDEKPREVVHVRARRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSFYDFNSDSDSGDKMKVKELREGNGELLISSTQFGPFDLSFGPYSTLPFNGM 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18086513 18087954 + MC03g1204 Mch3g1629 684532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1629 268 SMART finulus 157 207 IPR011598 GO:0046983(InterPro)
Mch3g1629 268 MobiDBLite consensus disorder prediction 126 158 - -
Mch3g1629 268 MobiDBLite consensus disorder prediction 1 27 - -
Mch3g1629 268 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 149 219 IPR036638 GO:0046983(InterPro)
Mch3g1629 268 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 91 225 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Mch3g1629 268 Gene3D - 148 219 IPR036638 GO:0046983(InterPro)
Mch3g1629 268 MobiDBLite consensus disorder prediction 100 121 - -
Mch3g1629 268 FunFam transcription factor BEE 3-like 148 219 - -
Mch3g1629 268 CDD bHLH_AtBPE_like 141 226 - -
Mch3g1629 268 Pfam Helix-loop-helix DNA-binding domain 155 202 IPR011598 GO:0046983(InterPro)
Mch3g1629 268 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 201 IPR011598 GO:0046983(InterPro)
Mch3g1629 268 MobiDBLite consensus disorder prediction 93 158 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1629 Mch-Chr3:18086513 Mch4g1336 Mch-Chr4:16629400 3.97E-44 dispersed
Mch3g1629 Mch-Chr3:18086513 Mch6g0383 Mch-Chr6:2538331 6.45E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43074 PF00010 HLH 5.10E-05 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1629 - - - 0.0