Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1677 ATGGGGAGAGGGAGAGTGCAACTGAAGAGGATTGAGAACAAGATCAACAGGCAAGTGACTTTCTCAAAGAGGAGGTCTGGTTTGCTTAAGAAAGCCCATGAAATTTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCCACAAAGGGCAAACTCTTTGAATACTCCACTGATTCTTGCATGGAAAAAATTCTGGAGCGATATGAAAGGTATTCATATGCAGAGAGGCGACTTGTTGCAAATGATAACCAATCCAACGGAAATTGGACTCTTGAACATGCAAAGCTTAAAGCTAGAGTAGAGGTTCTACAGAAAAACCACAGGCATTTCATGGGGGAAGAACTTGACTCCTTGAGTCTAAAAGAGCTCCAAAATATTGAGCAACAGCTTGATTCTGCACTCAAGCATATAAGAGCTAGAAAGAACCAACTCATGCATGAATCCATTTCAGAGCTTCAGAAAAAGGACAAGGCACTACAGGAGCAAAATAACATGTTAGCAAAGAAGATTAAGGAGAAGGAGAAAGCACAGGCTCAAAATCCACAATTGGAGCAGCAACAACAGAGTAGCCATGGAATAGAATCTTCCCCACTTCTCATACCTCAGCCATTCCATTCCCTTAACATGACTTGTCCTTACCCGACGCGTGACACCGGAGGCGAAGACATAACCGCCTGTCACGACAGATCAGGCGCCCTCCTGCCGCCGTGGATGCTCCGCCACCACCTTGGGGATTAA 744 44.62 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMEKILERYERYSYAERRLVANDNQSNGNWTLEHAKLKARVEVLQKNHRHFMGEELDSLSLKELQNIEQQLDSALKHIRARKNQLMHESISELQKKDKALQEQNNMLAKKIKEKEKAQAQNPQLEQQQQSSHGIESSPLLIPQPFHSLNMTCPYPTRDTGGEDITACHDRSGALLPPWMLRHHLGD 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18407785 18412999 - MC03g1246 Mch3g1677 684580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1677 247 MobiDBLite consensus disorder prediction 181 198 - -
Mch3g1677 247 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch3g1677 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g1677 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g1677 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 190 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch3g1677 247 Pfam K-box region 84 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch3g1677 247 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g1677 247 Coils Coil 122 145 - -
Mch3g1677 247 Gene3D - 13 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g1677 247 Coils Coil 151 188 - -
Mch3g1677 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g1677 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g1677 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g1677 247 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Mch3g1677 247 MobiDBLite consensus disorder prediction 173 203 - -
Mch3g1677 247 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Mch3g1677 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g1677 247 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1677 Mch-Chr3:18407785 Mch8g2369 Mch-Chr8:26813819 1.79E-82 dispersed
Mch3g1677 Mch-Chr3:18407785 Mch3g1678 Mch-Chr3:18417156 9.05E-50 tandem
Mch1g2155 Mch-Chr1:20720472 Mch3g1677 Mch-Chr3:18407785 8.96E-38 transposed
Mch3g1677 Mch-Chr3:18407785 Mch8g2368 Mch-Chr8:26794936 5.11E-50 wgd
Mch3g1677 Mch-Chr3:18407785 Mch8g0149 Mch-Chr8:929268 6.46E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43081 PF01486 K-box 2.80E-29 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1677 K09264 - csv:101207225 394.815