Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch3g1677 | ATGGGGAGAGGGAGAGTGCAACTGAAGAGGATTGAGAACAAGATCAACAGGCAAGTGACTTTCTCAAAGAGGAGGTCTGGTTTGCTTAAGAAAGCCCATGAAATTTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCCACAAAGGGCAAACTCTTTGAATACTCCACTGATTCTTGCATGGAAAAAATTCTGGAGCGATATGAAAGGTATTCATATGCAGAGAGGCGACTTGTTGCAAATGATAACCAATCCAACGGAAATTGGACTCTTGAACATGCAAAGCTTAAAGCTAGAGTAGAGGTTCTACAGAAAAACCACAGGCATTTCATGGGGGAAGAACTTGACTCCTTGAGTCTAAAAGAGCTCCAAAATATTGAGCAACAGCTTGATTCTGCACTCAAGCATATAAGAGCTAGAAAGAACCAACTCATGCATGAATCCATTTCAGAGCTTCAGAAAAAGGACAAGGCACTACAGGAGCAAAATAACATGTTAGCAAAGAAGATTAAGGAGAAGGAGAAAGCACAGGCTCAAAATCCACAATTGGAGCAGCAACAACAGAGTAGCCATGGAATAGAATCTTCCCCACTTCTCATACCTCAGCCATTCCATTCCCTTAACATGACTTGTCCTTACCCGACGCGTGACACCGGAGGCGAAGACATAACCGCCTGTCACGACAGATCAGGCGCCCTCCTGCCGCCGTGGATGCTCCGCCACCACCTTGGGGATTAA | 744 | 44.62 | MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMEKILERYERYSYAERRLVANDNQSNGNWTLEHAKLKARVEVLQKNHRHFMGEELDSLSLKELQNIEQQLDSALKHIRARKNQLMHESISELQKKDKALQEQNNMLAKKIKEKEKAQAQNPQLEQQQQSSHGIESSPLLIPQPFHSLNMTCPYPTRDTGGEDITACHDRSGALLPPWMLRHHLGD | 247 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 18407785 | 18412999 | - | MC03g1246 | Mch3g1677 | 684580 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch3g1677 | 247 | MobiDBLite | consensus disorder prediction | 181 | 198 | - | - | |
Mch3g1677 | 247 | ProSiteProfiles | K-box domain profile. | 88 | 178 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Mch3g1677 | 247 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch3g1677 | 247 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch3g1677 | 247 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 190 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Mch3g1677 | 247 | Pfam | K-box region | 84 | 172 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Mch3g1677 | 247 | SUPERFAMILY | SRF-like | 2 | 91 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch3g1677 | 247 | Coils | Coil | 122 | 145 | - | - | |
Mch3g1677 | 247 | Gene3D | - | 13 | 86 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch3g1677 | 247 | Coils | Coil | 151 | 188 | - | - | |
Mch3g1677 | 247 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch3g1677 | 247 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch3g1677 | 247 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch3g1677 | 247 | FunFam | MADS-box transcription factor MADS-MC | 13 | 86 | - | - | |
Mch3g1677 | 247 | MobiDBLite | consensus disorder prediction | 173 | 203 | - | - | |
Mch3g1677 | 247 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Mch3g1677 | 247 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch3g1677 | 247 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch3g1677 | Mch-Chr3:18407785 | Mch8g2369 | Mch-Chr8:26813819 | 1.79E-82 | dispersed | |
Mch3g1677 | Mch-Chr3:18407785 | Mch3g1678 | Mch-Chr3:18417156 | 9.05E-50 | tandem | |
Mch1g2155 | Mch-Chr1:20720472 | Mch3g1677 | Mch-Chr3:18407785 | 8.96E-38 | transposed | |
Mch3g1677 | Mch-Chr3:18407785 | Mch8g2368 | Mch-Chr8:26794936 | 5.11E-50 | wgd | |
Mch3g1677 | Mch-Chr3:18407785 | Mch8g0149 | Mch-Chr8:929268 | 6.46E-56 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43081 | PF01486 | K-box | 2.80E-29 | No_clan | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch3g1677 | K09264 | - | csv:101207225 | 394.815 |