Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1678 ATGGGGAGAGGGAGAGTAGAGCTGAAGAGAATTGAGAACAAAATAAACAGGCAGGTCACATTTGCCAAGAGGAGAAATGGGTTGCTCAAGAAAGCTTATGAACTCTCAATTCTCTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTAACCGTGGCAAGCTCTTTGAGTTCTCTAGCTCCTCTAGCATGACCAAAACACTCGAGAAATATCGAAGGTGCAATTATGGTGTATGGGAGGCTACTCGCCAAGTAAATGAGAATCGGTCATACAACTTTGACGAATATCTGAACCTAAAAGCTACAGTTGAATTCCTGCAGCAATCTCAAAGAAATCTTTTGGGGGAAGATTTAGGGCCATTGAATCCTAAGGAACTTGAACAGCTTGAGCATCAATTGGAGACATCTTTGGAGCGCATTAGATCCACAAAGACAAAATACCTAATTGACCAGCTTGCAGATCTTCAACACAAGGAACAAATGCTTGTTGAAGACAACCAAGGCTTAAGAAAGAAGGTGGAAGAAAGAAGTGCACAAGTGGCAGCGGCGGCAGCCGCCACATGGGACTGGGAAGCCGGCGGCGGAGGGCACAGCATGGAGCATCACAGCCGTGGTGCTTCACAAACAGACGCCTTCTTCCACCCCATAATACAATCCACTCCCACTTTACAAATTGGGTACAATCCTGTTCACTCAGTGGGGTTGAATAATAATGTTGGACCTCCATCCCAAAATGCCAATGGATTTCAGCTTGATTGGATGCTATAA 765 45.1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLFEFSSSSSMTKTLEKYRRCNYGVWEATRQVNENRSYNFDEYLNLKATVEFLQQSQRNLLGEDLGPLNPKELEQLEHQLETSLERIRSTKTKYLIDQLADLQHKEQMLVEDNQGLRKKVEERSAQVAAAAAATWDWEAGGGGHSMEHHSRGASQTDAFFHPIIQSTPTLQIGYNPVHSVGLNNNVGPPSQNANGFQLDWML 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18417156 18421548 - MC03g1247 Mch3g1678 684581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1678 254 Gene3D - 13 96 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g1678 254 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g1678 254 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g1678 254 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch3g1678 254 FunFam MADS-box transcription factor 1 13 88 - -
Mch3g1678 254 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g1678 254 Coils Coil 125 145 - -
Mch3g1678 254 Pfam K-box region 91 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch3g1678 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 198 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch3g1678 254 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g1678 254 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g1678 254 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g1678 254 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Mch3g1678 254 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g1678 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1678 Mch-Chr3:18417156 Mch8g2368 Mch-Chr8:26794936 5.59E-93 dispersed
Mch3g1677 Mch-Chr3:18407785 Mch3g1678 Mch-Chr3:18417156 9.05E-50 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43082 PF01486 K-box 2.40E-26 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1678 K09264 - csv:101204197 378.637