Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch3g1681 | CTGATCTTTTTCTTTGTTTTTCTAGTGGCTTACGACTCGCTGGACCCGAATGGAAACATTGAAATCAAATGGGATGTCATGTATTGGACTGCAGATGGTTACGGGGCAACGGTGACGATAACCAACTATCAGATGTATCGACATATCATGAGCCCAGGATGGACTTTGGGATGGGTATGGGCAAAGAAAGAGGTCATCTGGTCCATACAAGGAGCTGAAGCTACTGATCAAGGAGATTGTTCCACATTTGGAGAAACTATACCACACAGTTGCAAAAGAGATCCAACAGTAGTTGACTTGCTTCCAGGTGTTCCTTACAACAAACAGGTCGCTATGTGCTGCAAAGGTGGTGTTTTGGCATCTTGGGGACAAGATCCTTCATCTGCTGTGTCTTCCTTTCAGTTGACTGTTGGTCACTCTGGTAGTTCAAATACAACAGTGAAACTTCCCAAGAATTTCACCCTGTATGGTCCAGGGCTAGGTTACACATGTGGCCAGGCAAAGATTGCTCCGAAGTCAGCTTTCTACTCATCTGATGGTCGTCGAAAAACTTATGCATTGATGACTTGGAATGTGATATGCACTTACTCGCAGTTCCTTGCTTCTGAAACGCCAACCTGCTGTGTCTCCATGTCATCCTTCTATAACTCCAAAATCACTCCTTGTAAAGCATGTGCTTGTGGCTGCCAACGCAAGATGGAATGTATCTTCTATCAAAAGGAAGTAATTTTGTGTTGGTACTTGAGGGAACAGTATTATATAAGTTATAAAACTATGGTATTTTACTTAGCAAGTGCTGCTGCTTCTGCGACAATGACGCCTCTGAATGTTGATGTCCCGCGTAATAAACTTATGGAGCTTGTTGCAAAGGGTCTTGCGGTGGAGAAAGATGAGACGTTAAGGGGGAATTCTGCTTCTGCATTGTACGAATTTGGTTCATCGGTGCCCACTTCATATGGGTCTGCACTGGCCTCTCGTACTTCTGCCATCGACTTCAGCGCTGTGCAGGATACAAAAGGGTCATCGAAGAATTTTCCAAAGCATGAGACTCGACATCTTTCGGAACATAAGAATGTTGCCAGATGTGCAAGGTTCAGTCCTGATGGGAGATTTGTTGCCACTGGAAGTGCGGATATGTCAATAAAGCTGTTTGAGGTGGCAAAGATCAAGCAAATGATGCTGCCAGATGCAAAAGATGGTCCTGTCCGACCTGTTATAAGGACGTTTTATGATCACATTCAACCAATAAATGATTTGGATTTTCATCCTCAGAATACTGTTCTTATATCTGGTGCAAAAGATCACACAATAAAATTCTTTGACTTCTCCAAATTGACTGCAAAGAAAGCATTCAGAGTTATCCAGGATACCCATAACGTGCGTTCTATATCTCTTCATCCCTCAGGAGATTATCTTTTAGCAGGAACGGATCATCCCATTGCCCACCTATATGATGTCAATACTTTTCAGTGCTTTCTATCTGCAAATGTTCCGGAAATAGGAAGTAATGGAGCCATAAATCAGGTCAGGTATTCAGCAACAGGTAGTATGTATGTCACTGCTTCAAAGGATGGTGCGGTTCGTTTATGGGATGGAGTTAGTGCTAAATGTATCCGCCTAATCGCCAGTGCACATGCCGCAGCTGAGGCAACCAGTGCAAAATTTACAAAAGATGAAAGGTTCGTTCTTTCTTGTGGGAAGGACTCCACTGTAAAGCTTTGGGATGTGGGGACGGGGAGACTGGTCAAACAATATGTTGGAGCTACCCATATGCAATTGAGATGTCAGGCTGTCTTCAATGATACTGAGGAATTTGTGCTATCGATAGACGAGCCGAGCAATGAGATCGTTATTTGGGATGCTCTGACAGCAGAGAGAGTAGCAAGGTGGCCCTCGAACCACGTTGGCGTGCCCCGGTGGCTCGAGCACTCACCAACAGAGTCGGCCTTCATTTCCTGCGGGACCGATAAATCGATACGCTTTTGGAAGGAATCCCTCTAG | 2001 | 44.53 | LIFFFVFLVAYDSLDPNGNIEIKWDVMYWTADGYGATVTITNYQMYRHIMSPGWTLGWVWAKKEVIWSIQGAEATDQGDCSTFGETIPHSCKRDPTVVDLLPGVPYNKQVAMCCKGGVLASWGQDPSSAVSSFQLTVGHSGSSNTTVKLPKNFTLYGPGLGYTCGQAKIAPKSAFYSSDGRRKTYALMTWNVICTYSQFLASETPTCCVSMSSFYNSKITPCKACACGCQRKMECIFYQKEVILCWYLREQYYISYKTMVFYLASAAASATMTPLNVDVPRNKLMELVAKGLAVEKDETLRGNSASALYEFGSSVPTSYGSALASRTSAIDFSAVQDTKGSSKNFPKHETRHLSEHKNVARCARFSPDGRFVATGSADMSIKLFEVAKIKQMMLPDAKDGPVRPVIRTFYDHIQPINDLDFHPQNTVLISGAKDHTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSANVPEIGSNGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCIRLIASAHAAAEATSAKFTKDERFVLSCGKDSTVKLWDVGTGRLVKQYVGATHMQLRCQAVFNDTEEFVLSIDEPSNEIVIWDALTAERVARWPSNHVGVPRWLEHSPTESAFISCGTDKSIRFWKESL | 666 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 18443883 | 18452277 | + | MC03g1250 | Mch3g1681 | 684584 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch3g1681 | 666 | SMART | WD40_4 | 534 | 575 | IPR001680 | GO:0005515(InterPro) | |
Mch3g1681 | 666 | SMART | WD40_4 | 623 | 663 | IPR001680 | GO:0005515(InterPro) | |
Mch3g1681 | 666 | SMART | WD40_4 | 346 | 385 | IPR001680 | GO:0005515(InterPro) | |
Mch3g1681 | 666 | SMART | WD40_4 | 402 | 441 | IPR001680 | GO:0005515(InterPro) | |
Mch3g1681 | 666 | SMART | WD40_4 | 488 | 531 | IPR001680 | GO:0005515(InterPro) | |
Mch3g1681 | 666 | SMART | WD40_4 | 447 | 485 | IPR001680 | GO:0005515(InterPro) | |
Mch3g1681 | 666 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 551 | 584 | IPR001680 | GO:0005515(InterPro) | |
Mch3g1681 | 666 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 409 | 443 | - | - | |
Mch3g1681 | 666 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 409 | 450 | IPR001680 | GO:0005515(InterPro) | |
Mch3g1681 | 666 | PANTHER | CLEAVAGE STIMULATION FACTOR SUBUNIT 1 | 263 | 665 | IPR044633 | GO:0003723(PANTHER)|GO:0005848(PANTHER)|GO:0005848(InterPro)|GO:0031124(InterPro) | |
Mch3g1681 | 666 | Pfam | WD domain, G-beta repeat | 543 | 575 | IPR001680 | GO:0005515(InterPro) | |
Mch3g1681 | 666 | Pfam | WD domain, G-beta repeat | 406 | 441 | IPR001680 | GO:0005515(InterPro) | |
Mch3g1681 | 666 | Pfam | WD domain, G-beta repeat | 350 | 384 | IPR001680 | GO:0005515(InterPro) | |
Mch3g1681 | 666 | Pfam | WD domain, G-beta repeat | 501 | 531 | IPR001680 | GO:0005515(InterPro) | |
Mch3g1681 | 666 | FunFam | Cleavage stimulation factor subunit 50 | 336 | 666 | - | - | |
Mch3g1681 | 666 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 499 | 531 | - | - | |
Mch3g1681 | 666 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 562 | 576 | IPR019775 | - | |
Mch3g1681 | 666 | SUPERFAMILY | WD40 repeat-like | 345 | 663 | IPR036322 | GO:0005515(InterPro) | |
Mch3g1681 | 666 | CDD | WD40 | 349 | 663 | - | - | |
Mch3g1681 | 666 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 353 | 386 | - | - | |
Mch3g1681 | 666 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 499 | 540 | IPR001680 | GO:0005515(InterPro) | |
Mch3g1681 | 666 | Pfam | COBRA-like protein | 34 | 197 | IPR006918 | GO:0010215(InterPro)|GO:0016020(InterPro) | |
Mch3g1681 | 666 | PRINTS | G protein beta WD-40 repeat signature | 562 | 576 | IPR020472 | - | |
Mch3g1681 | 666 | PRINTS | G protein beta WD-40 repeat signature | 650 | 664 | IPR020472 | - | |
Mch3g1681 | 666 | PRINTS | G protein beta WD-40 repeat signature | 518 | 532 | IPR020472 | - | |
Mch3g1681 | 666 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 353 | 394 | IPR001680 | GO:0005515(InterPro) | |
Mch3g1681 | 666 | Gene3D | - | 334 | 665 | IPR015943 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch3g1681 | Mch-Chr3:18443883 | Mch8g2363 | Mch-Chr8:26762816 | 3.29E-118 | dispersed | |
Mch3g1681 | Mch-Chr3:18443883 | Mch4g2378 | Mch-Chr4:24926046 | 1.67E-51 | wgd | |
Mch3g1681 | Mch-Chr3:18443883 | Mch6g0305 | Mch-Chr6:2022687 | 6.08E-112 | wgd | |
Mch3g1681 | Mch-Chr3:18443883 | Mch8g2362 | Mch-Chr8:26761020 | 8.62E-110 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch3g1681 | K14406 | - | csv:101206503 | 754.592 |