Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1681 CTGATCTTTTTCTTTGTTTTTCTAGTGGCTTACGACTCGCTGGACCCGAATGGAAACATTGAAATCAAATGGGATGTCATGTATTGGACTGCAGATGGTTACGGGGCAACGGTGACGATAACCAACTATCAGATGTATCGACATATCATGAGCCCAGGATGGACTTTGGGATGGGTATGGGCAAAGAAAGAGGTCATCTGGTCCATACAAGGAGCTGAAGCTACTGATCAAGGAGATTGTTCCACATTTGGAGAAACTATACCACACAGTTGCAAAAGAGATCCAACAGTAGTTGACTTGCTTCCAGGTGTTCCTTACAACAAACAGGTCGCTATGTGCTGCAAAGGTGGTGTTTTGGCATCTTGGGGACAAGATCCTTCATCTGCTGTGTCTTCCTTTCAGTTGACTGTTGGTCACTCTGGTAGTTCAAATACAACAGTGAAACTTCCCAAGAATTTCACCCTGTATGGTCCAGGGCTAGGTTACACATGTGGCCAGGCAAAGATTGCTCCGAAGTCAGCTTTCTACTCATCTGATGGTCGTCGAAAAACTTATGCATTGATGACTTGGAATGTGATATGCACTTACTCGCAGTTCCTTGCTTCTGAAACGCCAACCTGCTGTGTCTCCATGTCATCCTTCTATAACTCCAAAATCACTCCTTGTAAAGCATGTGCTTGTGGCTGCCAACGCAAGATGGAATGTATCTTCTATCAAAAGGAAGTAATTTTGTGTTGGTACTTGAGGGAACAGTATTATATAAGTTATAAAACTATGGTATTTTACTTAGCAAGTGCTGCTGCTTCTGCGACAATGACGCCTCTGAATGTTGATGTCCCGCGTAATAAACTTATGGAGCTTGTTGCAAAGGGTCTTGCGGTGGAGAAAGATGAGACGTTAAGGGGGAATTCTGCTTCTGCATTGTACGAATTTGGTTCATCGGTGCCCACTTCATATGGGTCTGCACTGGCCTCTCGTACTTCTGCCATCGACTTCAGCGCTGTGCAGGATACAAAAGGGTCATCGAAGAATTTTCCAAAGCATGAGACTCGACATCTTTCGGAACATAAGAATGTTGCCAGATGTGCAAGGTTCAGTCCTGATGGGAGATTTGTTGCCACTGGAAGTGCGGATATGTCAATAAAGCTGTTTGAGGTGGCAAAGATCAAGCAAATGATGCTGCCAGATGCAAAAGATGGTCCTGTCCGACCTGTTATAAGGACGTTTTATGATCACATTCAACCAATAAATGATTTGGATTTTCATCCTCAGAATACTGTTCTTATATCTGGTGCAAAAGATCACACAATAAAATTCTTTGACTTCTCCAAATTGACTGCAAAGAAAGCATTCAGAGTTATCCAGGATACCCATAACGTGCGTTCTATATCTCTTCATCCCTCAGGAGATTATCTTTTAGCAGGAACGGATCATCCCATTGCCCACCTATATGATGTCAATACTTTTCAGTGCTTTCTATCTGCAAATGTTCCGGAAATAGGAAGTAATGGAGCCATAAATCAGGTCAGGTATTCAGCAACAGGTAGTATGTATGTCACTGCTTCAAAGGATGGTGCGGTTCGTTTATGGGATGGAGTTAGTGCTAAATGTATCCGCCTAATCGCCAGTGCACATGCCGCAGCTGAGGCAACCAGTGCAAAATTTACAAAAGATGAAAGGTTCGTTCTTTCTTGTGGGAAGGACTCCACTGTAAAGCTTTGGGATGTGGGGACGGGGAGACTGGTCAAACAATATGTTGGAGCTACCCATATGCAATTGAGATGTCAGGCTGTCTTCAATGATACTGAGGAATTTGTGCTATCGATAGACGAGCCGAGCAATGAGATCGTTATTTGGGATGCTCTGACAGCAGAGAGAGTAGCAAGGTGGCCCTCGAACCACGTTGGCGTGCCCCGGTGGCTCGAGCACTCACCAACAGAGTCGGCCTTCATTTCCTGCGGGACCGATAAATCGATACGCTTTTGGAAGGAATCCCTCTAG 2001 44.53 LIFFFVFLVAYDSLDPNGNIEIKWDVMYWTADGYGATVTITNYQMYRHIMSPGWTLGWVWAKKEVIWSIQGAEATDQGDCSTFGETIPHSCKRDPTVVDLLPGVPYNKQVAMCCKGGVLASWGQDPSSAVSSFQLTVGHSGSSNTTVKLPKNFTLYGPGLGYTCGQAKIAPKSAFYSSDGRRKTYALMTWNVICTYSQFLASETPTCCVSMSSFYNSKITPCKACACGCQRKMECIFYQKEVILCWYLREQYYISYKTMVFYLASAAASATMTPLNVDVPRNKLMELVAKGLAVEKDETLRGNSASALYEFGSSVPTSYGSALASRTSAIDFSAVQDTKGSSKNFPKHETRHLSEHKNVARCARFSPDGRFVATGSADMSIKLFEVAKIKQMMLPDAKDGPVRPVIRTFYDHIQPINDLDFHPQNTVLISGAKDHTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSANVPEIGSNGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCIRLIASAHAAAEATSAKFTKDERFVLSCGKDSTVKLWDVGTGRLVKQYVGATHMQLRCQAVFNDTEEFVLSIDEPSNEIVIWDALTAERVARWPSNHVGVPRWLEHSPTESAFISCGTDKSIRFWKESL 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18443883 18452277 + MC03g1250 Mch3g1681 684584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1681 666 SMART WD40_4 534 575 IPR001680 GO:0005515(InterPro)
Mch3g1681 666 SMART WD40_4 623 663 IPR001680 GO:0005515(InterPro)
Mch3g1681 666 SMART WD40_4 346 385 IPR001680 GO:0005515(InterPro)
Mch3g1681 666 SMART WD40_4 402 441 IPR001680 GO:0005515(InterPro)
Mch3g1681 666 SMART WD40_4 488 531 IPR001680 GO:0005515(InterPro)
Mch3g1681 666 SMART WD40_4 447 485 IPR001680 GO:0005515(InterPro)
Mch3g1681 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 551 584 IPR001680 GO:0005515(InterPro)
Mch3g1681 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 409 443 - -
Mch3g1681 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 409 450 IPR001680 GO:0005515(InterPro)
Mch3g1681 666 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 263 665 IPR044633 GO:0003723(PANTHER)|GO:0005848(PANTHER)|GO:0005848(InterPro)|GO:0031124(InterPro)
Mch3g1681 666 Pfam WD domain, G-beta repeat 543 575 IPR001680 GO:0005515(InterPro)
Mch3g1681 666 Pfam WD domain, G-beta repeat 406 441 IPR001680 GO:0005515(InterPro)
Mch3g1681 666 Pfam WD domain, G-beta repeat 350 384 IPR001680 GO:0005515(InterPro)
Mch3g1681 666 Pfam WD domain, G-beta repeat 501 531 IPR001680 GO:0005515(InterPro)
Mch3g1681 666 FunFam Cleavage stimulation factor subunit 50 336 666 - -
Mch3g1681 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 499 531 - -
Mch3g1681 666 ProSitePatterns Trp-Asp (WD) repeats signature. 562 576 IPR019775 -
Mch3g1681 666 SUPERFAMILY WD40 repeat-like 345 663 IPR036322 GO:0005515(InterPro)
Mch3g1681 666 CDD WD40 349 663 - -
Mch3g1681 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 353 386 - -
Mch3g1681 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 499 540 IPR001680 GO:0005515(InterPro)
Mch3g1681 666 Pfam COBRA-like protein 34 197 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Mch3g1681 666 PRINTS G protein beta WD-40 repeat signature 562 576 IPR020472 -
Mch3g1681 666 PRINTS G protein beta WD-40 repeat signature 650 664 IPR020472 -
Mch3g1681 666 PRINTS G protein beta WD-40 repeat signature 518 532 IPR020472 -
Mch3g1681 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 353 394 IPR001680 GO:0005515(InterPro)
Mch3g1681 666 Gene3D - 334 665 IPR015943 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1681 K14406 - - csv:101206503 754.592
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1681 Mch-Chr3:18443883 Mch8g2363 Mch-Chr8:26762816 3.29E-118 dispersed
Mch3g1681 Mch-Chr3:18443883 Mch4g2378 Mch-Chr4:24926046 1.67E-51 wgd
Mch3g1681 Mch-Chr3:18443883 Mch6g0305 Mch-Chr6:2022687 6.08E-112 wgd
Mch3g1681 Mch-Chr3:18443883 Mch8g2362 Mch-Chr8:26761020 8.62E-110 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g0305 . 48 448 COBRA Gene Family AT5G60920 79.7 5.7e-210 726.9
Mch8g2362 . 52 450 COBRA Gene Family AT5G60920 76.2 1.8e-200 695.3
Mch8g2363 . 111 507 COBRA Gene Family AT5G60920 68.3 4.0e-179 624.4
Mch6g0306 . 55 450 COBRA Gene Family AT5G60920 68.1 5.4e-176 614.0
Mch10g0559 . 32 429 COBRA Gene Family AT5G60920 54.2 6.2e-132 467.6
Mch4g2378 . 85 385 COBRA Gene Family AT5G60920 53.2 5.7e-117 417.9
Mch3g1681 . 22 230 COBRA Gene Family AT5G60920 67.0 4.7e-87 318.5
Mch6g0305 . 18 448 COBRA Gene Family AT3G02210 73.4 3.2e-206 714.5
Mch8g2362 . 31 456 COBRA Gene Family AT3G02210 74.2 1.8e-201 698.7
Mch8g2363 . 84 509 COBRA Gene Family AT3G02210 66.5 4.0e-180 627.9
Mch6g0306 . 27 454 COBRA Gene Family AT3G02210 65.8 1.1e-177 619.8
Mch10g0559 . 3 429 COBRA Gene Family AT3G02210 54.5 5.6e-142 501.1
Mch4g2378 . 71 385 COBRA Gene Family AT3G02210 54.1 4.5e-123 438.3
Mch3g1681 . 10 234 COBRA Gene Family AT3G02210 64.4 5.0e-90 328.6
Mch6g0305 . 18 453 COBRA Gene Family AT3G29810 74.7 1.7e-204 708.8
Mch8g2362 . 40 456 COBRA Gene Family AT3G29810 72.4 1.6e-194 675.6
Mch8g2363 . 94 508 COBRA Gene Family AT3G29810 65.6 1.7e-175 612.5
Mch6g0306 . 38 448 COBRA Gene Family AT3G29810 66.1 9.2e-174 606.7
Mch10g0559 . 15 431 COBRA Gene Family AT3G29810 56.3 6.1e-141 497.7
Mch4g2378 . 72 385 COBRA Gene Family AT3G29810 56.4 9.4e-126 447.2
Mch3g1681 . 3 234 COBRA Gene Family AT3G29810 62.1 1.5e-91 333.6
Mch8g2363 . 80 419 COBRA Gene Family AT5G15630 82.4 1.6e-178 622.1
Mch6g0306 . 32 363 COBRA Gene Family AT5G15630 83.4 3.1e-177 617.8
Mch6g0305 . 31 360 COBRA Gene Family AT5G15630 72.4 2.5e-150 528.5
Mch8g2362 . 38 366 COBRA Gene Family AT5G15630 68.1 1.2e-144 509.6
Mch3g1681 . 10 243 COBRA Gene Family AT5G15630 67.1 2.6e-99 359.0
Mch10g0559 . 20 342 COBRA Gene Family AT5G15630 50.6 1.4e-97 353.2
Mch6g0305 . 18 224 COBRA Gene Family AT5G60950 58.2 1.9e-65 245.7
Mch8g2362 . 48 228 COBRA Gene Family AT5G60950 60.2 2.0e-62 235.7
Mch8g2363 . 107 287 COBRA Gene Family AT5G60950 58.0 5.1e-58 221.1
Mch6g0306 . 51 231 COBRA Gene Family AT5G60950 56.9 4.3e-57 218.0
Mch10g0559 . 16 416 COBRA Gene Family AT1G09790 61.0 2.9e-151 531.9
Mch6g0306 . 41 434 COBRA Gene Family AT1G09790 53.7 6.7e-132 467.6
Mch6g0305 . 34 431 COBRA Gene Family AT1G09790 53.7 1.5e-131 466.5
Mch8g2362 . 40 436 COBRA Gene Family AT1G09790 53.5 2.6e-131 465.7
Mch8g2363 . 83 490 COBRA Gene Family AT1G09790 51.3 4.8e-130 461.5
Mch5g0748 . 35 647 COBRA Gene Family AT4G16120 66.4 3.8e-256 880.9
Mch10g1227 . 53 650 COBRA Gene Family AT4G16120 53.2 4.7e-198 688.0
Mch5g0748 . 15 653 COBRA Gene Family AT3G16860 61.7 4.5e-241 830.9
Mch10g1227 . 53 656 COBRA Gene Family AT3G16860 52.2 4.7e-190 661.4
Mch5g0748 . 30 634 COBRA Gene Family AT5G49270 63.7 4.1e-242 834.3
Mch10g1227 . 55 651 COBRA Gene Family AT5G49270 51.1 1.8e-189 659.4
Mch10g1227 . 53 669 COBRA Gene Family AT3G20580 64.7 3.3e-247 851.3
Mch5g0748 . 28 655 COBRA Gene Family AT3G20580 53.5 3.0e-208 721.8
Mch10g1227 . 57 674 COBRA Gene Family AT4G27110 61.6 3.6e-230 794.7
Mch5g0748 . 29 649 COBRA Gene Family AT4G27110 51.8 1.5e-199 693.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009578 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 32