Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1681 CTGATCTTTTTCTTTGTTTTTCTAGTGGCTTACGACTCGCTGGACCCGAATGGAAACATTGAAATCAAATGGGATGTCATGTATTGGACTGCAGATGGTTACGGGGCAACGGTGACGATAACCAACTATCAGATGTATCGACATATCATGAGCCCAGGATGGACTTTGGGATGGGTATGGGCAAAGAAAGAGGTCATCTGGTCCATACAAGGAGCTGAAGCTACTGATCAAGGAGATTGTTCCACATTTGGAGAAACTATACCACACAGTTGCAAAAGAGATCCAACAGTAGTTGACTTGCTTCCAGGTGTTCCTTACAACAAACAGGTCGCTATGTGCTGCAAAGGTGGTGTTTTGGCATCTTGGGGACAAGATCCTTCATCTGCTGTGTCTTCCTTTCAGTTGACTGTTGGTCACTCTGGTAGTTCAAATACAACAGTGAAACTTCCCAAGAATTTCACCCTGTATGGTCCAGGGCTAGGTTACACATGTGGCCAGGCAAAGATTGCTCCGAAGTCAGCTTTCTACTCATCTGATGGTCGTCGAAAAACTTATGCATTGATGACTTGGAATGTGATATGCACTTACTCGCAGTTCCTTGCTTCTGAAACGCCAACCTGCTGTGTCTCCATGTCATCCTTCTATAACTCCAAAATCACTCCTTGTAAAGCATGTGCTTGTGGCTGCCAACGCAAGATGGAATGTATCTTCTATCAAAAGGAAGTAATTTTGTGTTGGTACTTGAGGGAACAGTATTATATAAGTTATAAAACTATGGTATTTTACTTAGCAAGTGCTGCTGCTTCTGCGACAATGACGCCTCTGAATGTTGATGTCCCGCGTAATAAACTTATGGAGCTTGTTGCAAAGGGTCTTGCGGTGGAGAAAGATGAGACGTTAAGGGGGAATTCTGCTTCTGCATTGTACGAATTTGGTTCATCGGTGCCCACTTCATATGGGTCTGCACTGGCCTCTCGTACTTCTGCCATCGACTTCAGCGCTGTGCAGGATACAAAAGGGTCATCGAAGAATTTTCCAAAGCATGAGACTCGACATCTTTCGGAACATAAGAATGTTGCCAGATGTGCAAGGTTCAGTCCTGATGGGAGATTTGTTGCCACTGGAAGTGCGGATATGTCAATAAAGCTGTTTGAGGTGGCAAAGATCAAGCAAATGATGCTGCCAGATGCAAAAGATGGTCCTGTCCGACCTGTTATAAGGACGTTTTATGATCACATTCAACCAATAAATGATTTGGATTTTCATCCTCAGAATACTGTTCTTATATCTGGTGCAAAAGATCACACAATAAAATTCTTTGACTTCTCCAAATTGACTGCAAAGAAAGCATTCAGAGTTATCCAGGATACCCATAACGTGCGTTCTATATCTCTTCATCCCTCAGGAGATTATCTTTTAGCAGGAACGGATCATCCCATTGCCCACCTATATGATGTCAATACTTTTCAGTGCTTTCTATCTGCAAATGTTCCGGAAATAGGAAGTAATGGAGCCATAAATCAGGTCAGGTATTCAGCAACAGGTAGTATGTATGTCACTGCTTCAAAGGATGGTGCGGTTCGTTTATGGGATGGAGTTAGTGCTAAATGTATCCGCCTAATCGCCAGTGCACATGCCGCAGCTGAGGCAACCAGTGCAAAATTTACAAAAGATGAAAGGTTCGTTCTTTCTTGTGGGAAGGACTCCACTGTAAAGCTTTGGGATGTGGGGACGGGGAGACTGGTCAAACAATATGTTGGAGCTACCCATATGCAATTGAGATGTCAGGCTGTCTTCAATGATACTGAGGAATTTGTGCTATCGATAGACGAGCCGAGCAATGAGATCGTTATTTGGGATGCTCTGACAGCAGAGAGAGTAGCAAGGTGGCCCTCGAACCACGTTGGCGTGCCCCGGTGGCTCGAGCACTCACCAACAGAGTCGGCCTTCATTTCCTGCGGGACCGATAAATCGATACGCTTTTGGAAGGAATCCCTCTAG 2001 44.53 LIFFFVFLVAYDSLDPNGNIEIKWDVMYWTADGYGATVTITNYQMYRHIMSPGWTLGWVWAKKEVIWSIQGAEATDQGDCSTFGETIPHSCKRDPTVVDLLPGVPYNKQVAMCCKGGVLASWGQDPSSAVSSFQLTVGHSGSSNTTVKLPKNFTLYGPGLGYTCGQAKIAPKSAFYSSDGRRKTYALMTWNVICTYSQFLASETPTCCVSMSSFYNSKITPCKACACGCQRKMECIFYQKEVILCWYLREQYYISYKTMVFYLASAAASATMTPLNVDVPRNKLMELVAKGLAVEKDETLRGNSASALYEFGSSVPTSYGSALASRTSAIDFSAVQDTKGSSKNFPKHETRHLSEHKNVARCARFSPDGRFVATGSADMSIKLFEVAKIKQMMLPDAKDGPVRPVIRTFYDHIQPINDLDFHPQNTVLISGAKDHTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSANVPEIGSNGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCIRLIASAHAAAEATSAKFTKDERFVLSCGKDSTVKLWDVGTGRLVKQYVGATHMQLRCQAVFNDTEEFVLSIDEPSNEIVIWDALTAERVARWPSNHVGVPRWLEHSPTESAFISCGTDKSIRFWKESL 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18443883 18452277 + MC03g1250 Mch3g1681 684584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1681 666 SMART WD40_4 534 575 IPR001680 GO:0005515(InterPro)
Mch3g1681 666 SMART WD40_4 623 663 IPR001680 GO:0005515(InterPro)
Mch3g1681 666 SMART WD40_4 346 385 IPR001680 GO:0005515(InterPro)
Mch3g1681 666 SMART WD40_4 402 441 IPR001680 GO:0005515(InterPro)
Mch3g1681 666 SMART WD40_4 488 531 IPR001680 GO:0005515(InterPro)
Mch3g1681 666 SMART WD40_4 447 485 IPR001680 GO:0005515(InterPro)
Mch3g1681 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 551 584 IPR001680 GO:0005515(InterPro)
Mch3g1681 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 409 443 - -
Mch3g1681 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 409 450 IPR001680 GO:0005515(InterPro)
Mch3g1681 666 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 263 665 IPR044633 GO:0003723(PANTHER)|GO:0005848(PANTHER)|GO:0005848(InterPro)|GO:0031124(InterPro)
Mch3g1681 666 Pfam WD domain, G-beta repeat 543 575 IPR001680 GO:0005515(InterPro)
Mch3g1681 666 Pfam WD domain, G-beta repeat 406 441 IPR001680 GO:0005515(InterPro)
Mch3g1681 666 Pfam WD domain, G-beta repeat 350 384 IPR001680 GO:0005515(InterPro)
Mch3g1681 666 Pfam WD domain, G-beta repeat 501 531 IPR001680 GO:0005515(InterPro)
Mch3g1681 666 FunFam Cleavage stimulation factor subunit 50 336 666 - -
Mch3g1681 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 499 531 - -
Mch3g1681 666 ProSitePatterns Trp-Asp (WD) repeats signature. 562 576 IPR019775 -
Mch3g1681 666 SUPERFAMILY WD40 repeat-like 345 663 IPR036322 GO:0005515(InterPro)
Mch3g1681 666 CDD WD40 349 663 - -
Mch3g1681 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 353 386 - -
Mch3g1681 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 499 540 IPR001680 GO:0005515(InterPro)
Mch3g1681 666 Pfam COBRA-like protein 34 197 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Mch3g1681 666 PRINTS G protein beta WD-40 repeat signature 562 576 IPR020472 -
Mch3g1681 666 PRINTS G protein beta WD-40 repeat signature 650 664 IPR020472 -
Mch3g1681 666 PRINTS G protein beta WD-40 repeat signature 518 532 IPR020472 -
Mch3g1681 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 353 394 IPR001680 GO:0005515(InterPro)
Mch3g1681 666 Gene3D - 334 665 IPR015943 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1681 Mch-Chr3:18443883 Mch8g2363 Mch-Chr8:26762816 3.29E-118 dispersed
Mch3g1681 Mch-Chr3:18443883 Mch4g2378 Mch-Chr4:24926046 1.67E-51 wgd
Mch3g1681 Mch-Chr3:18443883 Mch6g0305 Mch-Chr6:2022687 6.08E-112 wgd
Mch3g1681 Mch-Chr3:18443883 Mch8g2362 Mch-Chr8:26761020 8.62E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1681 K14406 - csv:101206503 754.592