Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1721 GTGTTTGATTGTTGCTTCTCTACTGACATCTTGGAAGAGGATGAGTACAAAGTGTACTTGGCTGGCATTATACCAAGGCTACAAGACCACTTTCCTGACGCTTCTTTCATGGTTTTTAACTTTAGTGAACGAAAGAGGAGGACTAAAACTTCAGACATATTGTCTCAATATGGTATGACGGTGATGGAATATCCTCTGCAATATGAAGGGTGTCCACTCCTGCCATTGGAAATGATCCACCACTTTATTCGGTCGAGTGAAAGCTGGTTGTCCTTGGAGAGACAGAAAAATGTGTTGTTGATGAACTGTGAACGAGGAGGATGGCCAATCCTTGCTTTCATGCTTTCAGGTCTCTTGTTGTACCGTAAACAATATGACGGGGAGCAAAAGACCCTTGAAATGGTCTACAAGCAAGCTCCTAGAGAACTCTTCCATGTCCTTTCTCCAGTAAACTCACAGCCTTCTCAAATGAGATACCTTCAGTATATTTCTAGGAGAAATCTAGGTTTTGATTGGCCTCCACCTGATACACCTCTAATTTTAGACTGTCTGATACTCCGGGACCTTCCTATGCTTGATGGAGGAAAAGGGTGCAGGCCTGTCGTACGCATTTATGGTCAGGATCCGTTAACACCAAGAAATAGAAACCCAAAACTTATCTTTTCAAGTGCAAAGATGAAAGGACGTAGCTTCCACTACCTGCAGGCAGCAAGCAAACTGGTAAAAATGGACGTTCATTGTCATCTTCAAGGGGATGTTGTTCTTGAGTGCATCCATTTAGCTGGAGATCTAATACACGAGGAAGTGATGTTTAGAGTTATGTTTCACACGGCATTCGTGCATTCAAACAGTTTGAAGCTCAATCGTGATGAGGTTGATGTTATATGGGATGCTAAGGAGCAGTTTCCTAAAGATTTTAGAGCAGAGGTGCTTTTCCTGGATGCTGATGATGCTGTGCCAAACCTCTCTACAGTCATGAAAAGTGAGGACAAAATCGAAATTGAAAGCAATTCAACTGAGGAGTTTTTTGAAGTGGAAGAAATATTTAGCAATGTTGTTGACGTGCAGGAAGTTAAGAGGGACTACGATATTCAAATGGTACATGCTAATGAAACAGATGATATGGACCATCGAGCAGTTTGGAAGGAGGATGCAGGTCCTCCTACATTCCAACGCTGTAACTCATATGGAGGGAGTCAAAACTTGGACATGAAGGTGGATTCTAACGTGGAAGCAGTGAAGGACATAACTGTTGATGATGCGACTTTCAAGACAGATGAAAAACTGGACTCTGGTTTTCACGTAGTGAAGGACATTGTTGTGGATTATGGAGATAAAAAGCCAAATCCTCTGCTATTTTCTGTTAATTTACCGAGACGTATGGGAATCCAGGAACTGATAGACAATGCTTATGACAAGTTGGAAGAAATGAAGCATAAAGGGTGTGGAGAAGAAACTGCTATTACAGACATTGAATCAAAGGTTCCCGTGAAAAAGTTGAATCCTGATGCGTGGAGGCTGAAATATGAGAAGTCGTTGTCAATAGCATCTAGGAATCAGCCTCCATCAACAGTTAAGCTAATCAATCAGACAACTCTAGCTAAACAGAAGACCAAACAGCCGGAAGATCTGGGATTTCTTGTAAAACAGGCAAAACCAAACACTCTTTCTAGATGGACTTCACATGACAAAGAATCTTACATAAACTCCATGCATGTGTTTTATCCACCATCAAGGCATAGCGGTAACCCAGCATCATCTATCAGTTCTCCTACTAGGGATTCTTATTCATATTCAATATCAAAATCTGCTTCTGCTTGTGCTACTTCAGGACAGTTGCCTTCAGCTGATACAGTTGATGAACCGAAAAGTAACAAGGTGAGTCCTATAAAACCTTTATGTCTTGCATCAGAGATTCTCACGATACAATCACCACTTGGCTCCCCAGGACCATTACCAAATGTTGTTCCGCATCAAGACCCTACTCTCTCTCAATCTCCAACTACACTTCTACAGCCACCAGCTCTTCATGCTAACATCTCTTTGTTGCATGCATCATCTCCTAAGTCTTCTATGATACCTACTTCATATTTACATATCAATGCAAGATCTCCTCCTCCACCCCCTCCACCACCACCTCCTCCACCTTCCACTCGTGTGGCACCTAAGAGTTCTGCACTGGTGAGTGATACTACACCTAAGCATAGTGCTCCACCTGCACCACCTCCACCTCCTCTACATAGAGCTCAAACACTATTACCACCCCCTTCCCATGGAGCTTTGCCTTTTTCACGCCTATCAAATGCTGGAGCTTTGCCTCCACCCCCTCCCCCACCCCCTCCAACTCAAAGGGCGGCTCCTCCACATCTAACCCTGGGGCGGCAGGCTTTACCATCTCCAACAACTTGTGTAGTCCCATCATCCCAGCCACCTCCAATTTGTGAAGCACCATCACCCCCTCAATCTACGACTGGTCCTCTTCCACTAGTTCCTTCTTCCAAACCTCCAGGGGGTATGTCTCCACACACGGGAGCCAAAGGAGTAAATTCTTCAACTGATGTGAAAACATCATCTATATTGAGGGGACGTGGGTTCTCACGATCAATTAGCAATGGGGTTGCTTCAGTGCCTCAACGATCACCATTGAAACCTCTGCATTGGAGCAAGGTGACTCGGGCACTACAAGGGAGCTTATGGGAAGAACTGCAAAGATGTGGAGATCCTGAAACTGCACCAGAATTTGATGTATCTGAGCTGGAGACACTTTTTTCTGTGATAGTCCCGAAACCTGTTGTTGATTCAGGAGGTAAATCCGGAGGAAGAAGGAAGTCAGTTGGATCAAAATTGGACAAAGTTCACTTGATTGATCTTAGGAGGGCAAATAACACTGAAATCATGCTAACAAAAGTTAGGATGCCACTTTCTGACATGATGGCAGCAGTACTCTCCATGGACGAGTCAGTATTAGATGTAGATCAAGTGGAAAATCTCATTAAATTTTGCCCTACCAGAGAGGAGATGGAGCTTCTAAAGGGGTACTGCGGTGACAAGGACAAACTTGGAAAGTGTGAACAGTACTTTTTGGAGATGATGCAAGTTCCTCGTGTGGAGTCGAAGTTAAGAGTGTTTTCTTTCAAGATTCAGTTCAGCTCTCAGATAGTAGAGTTCAGAAAAAGCCTAAACACTGTAAACTGTGTCTGTCTAGAGGTTAAGAATTCTTTCAAACTGAAGGAGATATTGAAGAGAATTCTTTGCCTGGGAAATATGCTGAACCAAGGAACTGCTAGGGGTTCTGCAATTGGTTTCAGGTTGGATAGTCTTTCAAAACTCACTGATACACGTGCTTCTAACAACAAGATGACTCTTATGCACTATCTTTGTAAGGTTCTTGCTTCGAAGTCACAATCACTTCTTGATTTTCATCTGGACCTTGGTAGCTTGGAAGCTGCGTCTAAGATACAATTGAAATCTTTGGCTGAAGAAATGCAAGCAATAACAAAAGGATTGGAAAAGGTGAGGCAGGAACTAGTCGCATCTGAAAATGATGGCCCCATCTCTGAAACCTTTCGGAAGACGTTGAAAGGATTTGTTACTCTTGCTGAGACAGAGGTGGAATCTGTGACAGTTCTTTATTCGGTGGTGGGTAGAAATGCTGATGCACTTGCACTATATTTTGGTGAGGATCCTGCCCGCTGTCCATTTGAACAA 3708 43.39 VFDCCFSTDILEEDEYKVYLAGIIPRLQDHFPDASFMVFNFSERKRRTKTSDILSQYGMTVMEYPLQYEGCPLLPLEMIHHFIRSSESWLSLERQKNVLLMNCERGGWPILAFMLSGLLLYRKQYDGEQKTLEMVYKQAPRELFHVLSPVNSQPSQMRYLQYISRRNLGFDWPPPDTPLILDCLILRDLPMLDGGKGCRPVVRIYGQDPLTPRNRNPKLIFSSAKMKGRSFHYLQAASKLVKMDVHCHLQGDVVLECIHLAGDLIHEEVMFRVMFHTAFVHSNSLKLNRDEVDVIWDAKEQFPKDFRAEVLFLDADDAVPNLSTVMKSEDKIEIESNSTEEFFEVEEIFSNVVDVQEVKRDYDIQMVHANETDDMDHRAVWKEDAGPPTFQRCNSYGGSQNLDMKVDSNVEAVKDITVDDATFKTDEKLDSGFHVVKDIVVDYGDKKPNPLLFSVNLPRRMGIQELIDNAYDKLEEMKHKGCGEETAITDIESKVPVKKLNPDAWRLKYEKSLSIASRNQPPSTVKLINQTTLAKQKTKQPEDLGFLVKQAKPNTLSRWTSHDKESYINSMHVFYPPSRHSGNPASSISSPTRDSYSYSISKSASACATSGQLPSADTVDEPKSNKVSPIKPLCLASEILTIQSPLGSPGPLPNVVPHQDPTLSQSPTTLLQPPALHANISLLHASSPKSSMIPTSYLHINARSPPPPPPPPPPPPSTRVAPKSSALVSDTTPKHSAPPAPPPPPLHRAQTLLPPPSHGALPFSRLSNAGALPPPPPPPPPTQRAAPPHLTLGRQALPSPTTCVVPSSQPPPICEAPSPPQSTTGPLPLVPSSKPPGGMSPHTGAKGVNSSTDVKTSSILRGRGFSRSISNGVASVPQRSPLKPLHWSKVTRALQGSLWEELQRCGDPETAPEFDVSELETLFSVIVPKPVVDSGGKSGGRRKSVGSKLDKVHLIDLRRANNTEIMLTKVRMPLSDMMAAVLSMDESVLDVDQVENLIKFCPTREEMELLKGYCGDKDKLGKCEQYFLEMMQVPRVESKLRVFSFKIQFSSQIVEFRKSLNTVNCVCLEVKNSFKLKEILKRILCLGNMLNQGTARGSAIGFRLDSLSKLTDTRASNNKMTLMHYLCKVLASKSQSLLDFHLDLGSLEAASKIQLKSLAEEMQAITKGLEKVRQELVASENDGPISETFRKTLKGFVTLAETEVESVTVLYSVVGRNADALALYFGEDPARCPFEQ 1236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18729607 18736748 + MC03g1289 Mch3g1721 684624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1721 1236 SUPERFAMILY Formin homology 2 domain (FH2 domain) 773 1233 - -
Mch3g1721 1236 ProSiteProfiles Formin homology-2 (FH2) domain profile. 872 1236 IPR015425 -
Mch3g1721 1236 MobiDBLite consensus disorder prediction 735 751 - -
Mch3g1721 1236 Pfam C2 domain of PTEN tumour-suppressor protein 174 312 IPR014020 -
Mch3g1721 1236 Pfam Formin Homology 2 Domain 877 1236 IPR015425 -
Mch3g1721 1236 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 24 164 IPR029021 -
Mch3g1721 1236 SMART it6_source 872 1236 IPR015425 -
Mch3g1721 1236 MobiDBLite consensus disorder prediction 648 670 - -
Mch3g1721 1236 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 176 312 IPR035892 -
Mch3g1721 1236 ProSiteProfiles C2 tensin-type domain profile. 176 315 IPR014020 -
Mch3g1721 1236 MobiDBLite consensus disorder prediction 701 720 - -
Mch3g1721 1236 PANTHER FORMIN-J 772 1236 IPR051144 -
Mch3g1721 1236 MobiDBLite consensus disorder prediction 698 855 - -
Mch3g1721 1236 Gene3D - 179 312 - -
Mch3g1721 1236 SMART PTEN_C2_2 174 314 IPR014020 -
Mch3g1721 1236 MobiDBLite consensus disorder prediction 804 835 - -
Mch3g1721 1236 Coils Coil 1155 1175 - -
Mch3g1721 1236 Gene3D Protein tyrosine phosphatase superfamily 1 174 IPR029021 -
Mch3g1721 1236 Gene3D Formin, FH2 domain 872 1236 IPR042201 -
Mch3g1721 1236 MobiDBLite consensus disorder prediction 769 786 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1721 K28090 - - csv:101221127 1910.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1721 Mch-Chr3:18729607 Mch6g0629 Mch-Chr6:4253783 1.76E-267 dispersed
Mch3g1721 Mch-Chr3:18729607 Mch6g0257 Mch-Chr6:1676940 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g2239 . 179 1035 FH2 protein (formin) Gene Family AT3G25500 52.1 5.6e-193 671.8
Mch2g1335 . 464 886 FH2 protein (formin) Gene Family AT3G25500 62.9 1.7e-141 500.7
Mch9g1150 . 450 859 FH2 protein (formin) Gene Family AT3G25500 65.1 1.1e-135 481.5
Mch6g2051 . 496 893 FH2 protein (formin) Gene Family AT3G25500 52.7 1.7e-104 377.9
Mch6g2239 . 598 1052 FH2 protein (formin) Gene Family AT2G43800 60.1 1.5e-143 507.3
Mch2g1335 . 464 902 FH2 protein (formin) Gene Family AT2G43800 55.4 1.1e-125 448.0
Mch2g0617 . 514 658 FH2 protein (formin) Gene Family AT4G15200 68.2 1.5e-49 194.1
Mch11g1148 . 462 605 FH2 protein (formin) Gene Family AT4G15200 62.5 9.5e-44 174.9
Mch8g2030 . 23 251 FH2 protein (formin) Gene Family AT1G24150 59.8 6.7e-70 261.9
Mch2g0617 . 512 979 FH2 protein (formin) Gene Family AT5G54650 61.8 1.8e-155 547.0
Mch6g2239 . 610 1010 FH2 protein (formin) Gene Family AT5G54650 51.5 1.9e-104 377.5
Mch2g1335 . 92 905 FH2 protein (formin) Gene Family AT5G67470 58.7 2.1e-220 762.7
Mch6g2239 . 590 1052 FH2 protein (formin) Gene Family AT5G67470 58.6 1.5e-133 474.2
Mch9g1150 . 463 859 FH2 protein (formin) Gene Family AT5G67470 59.7 1.2e-111 401.4
Mch6g2051 . 496 895 FH2 protein (formin) Gene Family AT5G67470 51.0 4.1e-104 376.3
Mch9g2201 . 358 842 FH2 protein (formin) Gene Family AT1G59910 54.0 2.8e-132 469.9
Mch8g2030 . 35 466 FH2 protein (formin) Gene Family AT1G70140 51.1 1.6e-120 430.6
Mch6g2239 . 630 1011 FH2 protein (formin) Gene Family AT5G48360 53.4 2.9e-101 366.7
Mch2g1335 . 468 862 FH2 protein (formin) Gene Family AT3G05470 51.9 3.3e-106 383.3
Mch6g2234 . 1 1278 FH2 protein (formin) Gene Family AT1G31810 65.5 0.0e+00 1188.3
Mch6g0258 . 1 314 FH2 protein (formin) Gene Family AT1G31810 50.5 1.4e-94 345.1
Mch6g0257 . 1063 1384 FH2 protein (formin) Gene Family AT5G07650 75.5 1.0e-130 464.5
Mch3g1721 . 955 1236 FH2 protein (formin) Gene Family AT5G07650 72.3 4.0e-111 399.4
Mch6g0629 . 919 1245 FH2 protein (formin) Gene Family AT5G07650 60.7 1.4e-108 391.0
Mch6g2234 . 924 1275 FH2 protein (formin) Gene Family AT5G07650 54.3 4.2e-100 362.8
Mch11g0505 . 1086 1375 FH2 protein (formin) Gene Family AT5G07650 59.2 4.5e-94 342.8
Mch6g0257 . 990 1374 FH2 protein (formin) Gene Family AT5G07770 69.2 6.8e-140 494.6
Mch3g1721 . 876 1236 FH2 protein (formin) Gene Family AT5G07770 64.1 6.6e-119 424.9
Mch6g0629 . 850 1237 FH2 protein (formin) Gene Family AT5G07770 55.8 1.7e-114 410.2
Mch6g2234 . 860 1269 FH2 protein (formin) Gene Family AT5G07770 51.8 2.1e-109 393.3
Mch11g0505 . 1010 1374 FH2 protein (formin) Gene Family AT5G07770 54.1 1.5e-102 370.5
Mch11g0505 . 984 1375 FH2 protein (formin) Gene Family AT3G32400 67.5 5.7e-148 521.2
Mch6g0629 . 834 1246 FH2 protein (formin) Gene Family AT3G32400 65.1 1.4e-146 516.5
Mch6g0257 . 990 1384 FH2 protein (formin) Gene Family AT3G32400 65.2 8.9e-141 497.3
Mch6g2234 . 860 1274 FH2 protein (formin) Gene Family AT3G32400 60.9 8.0e-134 474.2
Mch3g1721 . 850 1236 FH2 protein (formin) Gene Family AT3G32400 59.8 7.1e-122 434.5
Mch6g0629 . 1 1246 FH2 protein (formin) Gene Family AT2G25050 51.4 1.7e-291 999.2
Mch6g0258 . 1 312 FH2 protein (formin) Gene Family AT2G25050 56.1 1.4e-99 361.7
Mch6g0257 . 991 1384 FH2 protein (formin) Gene Family AT5G07780 63.5 1.9e-124 443.0
Mch3g1721 . 882 1236 FH2 protein (formin) Gene Family AT5G07780 58.5 5.3e-103 371.7
Mch6g0629 . 857 1245 FH2 protein (formin) Gene Family AT5G07780 53.2 4.9e-101 365.2
Mch6g0257 . 1 1393 FH2 protein (formin) Gene Family AT5G07740 57.4 0.0e+00 1137.1
Mch6g0258 . 1 348 FH2 protein (formin) Gene Family AT5G07740 68.3 1.2e-133 475.3
Mch6g0257 . 1062 1391 FH2 protein (formin) Gene Family AT5G07760 74.1 3.4e-127 453.0
Mch3g1721 . 954 1236 FH2 protein (formin) Gene Family AT5G07760 71.7 2.0e-108 390.6
Mch6g0629 . 925 1245 FH2 protein (formin) Gene Family AT5G07760 63.2 2.0e-108 390.6
Mch6g2234 . 934 1275 FH2 protein (formin) Gene Family AT5G07760 55.7 3.9e-99 359.8
Mch11g0505 . 1085 1375 FH2 protein (formin) Gene Family AT5G07760 58.5 2.1e-92 337.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001040 2 2 4 3 2 2 4 2 2 2 2 2 4 2 2 5 2 4 4 2 2 2 4 2 2 3 3 6 3 1 82