Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1721 GTGTTTGATTGTTGCTTCTCTACTGACATCTTGGAAGAGGATGAGTACAAAGTGTACTTGGCTGGCATTATACCAAGGCTACAAGACCACTTTCCTGACGCTTCTTTCATGGTTTTTAACTTTAGTGAACGAAAGAGGAGGACTAAAACTTCAGACATATTGTCTCAATATGGTATGACGGTGATGGAATATCCTCTGCAATATGAAGGGTGTCCACTCCTGCCATTGGAAATGATCCACCACTTTATTCGGTCGAGTGAAAGCTGGTTGTCCTTGGAGAGACAGAAAAATGTGTTGTTGATGAACTGTGAACGAGGAGGATGGCCAATCCTTGCTTTCATGCTTTCAGGTCTCTTGTTGTACCGTAAACAATATGACGGGGAGCAAAAGACCCTTGAAATGGTCTACAAGCAAGCTCCTAGAGAACTCTTCCATGTCCTTTCTCCAGTAAACTCACAGCCTTCTCAAATGAGATACCTTCAGTATATTTCTAGGAGAAATCTAGGTTTTGATTGGCCTCCACCTGATACACCTCTAATTTTAGACTGTCTGATACTCCGGGACCTTCCTATGCTTGATGGAGGAAAAGGGTGCAGGCCTGTCGTACGCATTTATGGTCAGGATCCGTTAACACCAAGAAATAGAAACCCAAAACTTATCTTTTCAAGTGCAAAGATGAAAGGACGTAGCTTCCACTACCTGCAGGCAGCAAGCAAACTGGTAAAAATGGACGTTCATTGTCATCTTCAAGGGGATGTTGTTCTTGAGTGCATCCATTTAGCTGGAGATCTAATACACGAGGAAGTGATGTTTAGAGTTATGTTTCACACGGCATTCGTGCATTCAAACAGTTTGAAGCTCAATCGTGATGAGGTTGATGTTATATGGGATGCTAAGGAGCAGTTTCCTAAAGATTTTAGAGCAGAGGTGCTTTTCCTGGATGCTGATGATGCTGTGCCAAACCTCTCTACAGTCATGAAAAGTGAGGACAAAATCGAAATTGAAAGCAATTCAACTGAGGAGTTTTTTGAAGTGGAAGAAATATTTAGCAATGTTGTTGACGTGCAGGAAGTTAAGAGGGACTACGATATTCAAATGGTACATGCTAATGAAACAGATGATATGGACCATCGAGCAGTTTGGAAGGAGGATGCAGGTCCTCCTACATTCCAACGCTGTAACTCATATGGAGGGAGTCAAAACTTGGACATGAAGGTGGATTCTAACGTGGAAGCAGTGAAGGACATAACTGTTGATGATGCGACTTTCAAGACAGATGAAAAACTGGACTCTGGTTTTCACGTAGTGAAGGACATTGTTGTGGATTATGGAGATAAAAAGCCAAATCCTCTGCTATTTTCTGTTAATTTACCGAGACGTATGGGAATCCAGGAACTGATAGACAATGCTTATGACAAGTTGGAAGAAATGAAGCATAAAGGGTGTGGAGAAGAAACTGCTATTACAGACATTGAATCAAAGGTTCCCGTGAAAAAGTTGAATCCTGATGCGTGGAGGCTGAAATATGAGAAGTCGTTGTCAATAGCATCTAGGAATCAGCCTCCATCAACAGTTAAGCTAATCAATCAGACAACTCTAGCTAAACAGAAGACCAAACAGCCGGAAGATCTGGGATTTCTTGTAAAACAGGCAAAACCAAACACTCTTTCTAGATGGACTTCACATGACAAAGAATCTTACATAAACTCCATGCATGTGTTTTATCCACCATCAAGGCATAGCGGTAACCCAGCATCATCTATCAGTTCTCCTACTAGGGATTCTTATTCATATTCAATATCAAAATCTGCTTCTGCTTGTGCTACTTCAGGACAGTTGCCTTCAGCTGATACAGTTGATGAACCGAAAAGTAACAAGGTGAGTCCTATAAAACCTTTATGTCTTGCATCAGAGATTCTCACGATACAATCACCACTTGGCTCCCCAGGACCATTACCAAATGTTGTTCCGCATCAAGACCCTACTCTCTCTCAATCTCCAACTACACTTCTACAGCCACCAGCTCTTCATGCTAACATCTCTTTGTTGCATGCATCATCTCCTAAGTCTTCTATGATACCTACTTCATATTTACATATCAATGCAAGATCTCCTCCTCCACCCCCTCCACCACCACCTCCTCCACCTTCCACTCGTGTGGCACCTAAGAGTTCTGCACTGGTGAGTGATACTACACCTAAGCATAGTGCTCCACCTGCACCACCTCCACCTCCTCTACATAGAGCTCAAACACTATTACCACCCCCTTCCCATGGAGCTTTGCCTTTTTCACGCCTATCAAATGCTGGAGCTTTGCCTCCACCCCCTCCCCCACCCCCTCCAACTCAAAGGGCGGCTCCTCCACATCTAACCCTGGGGCGGCAGGCTTTACCATCTCCAACAACTTGTGTAGTCCCATCATCCCAGCCACCTCCAATTTGTGAAGCACCATCACCCCCTCAATCTACGACTGGTCCTCTTCCACTAGTTCCTTCTTCCAAACCTCCAGGGGGTATGTCTCCACACACGGGAGCCAAAGGAGTAAATTCTTCAACTGATGTGAAAACATCATCTATATTGAGGGGACGTGGGTTCTCACGATCAATTAGCAATGGGGTTGCTTCAGTGCCTCAACGATCACCATTGAAACCTCTGCATTGGAGCAAGGTGACTCGGGCACTACAAGGGAGCTTATGGGAAGAACTGCAAAGATGTGGAGATCCTGAAACTGCACCAGAATTTGATGTATCTGAGCTGGAGACACTTTTTTCTGTGATAGTCCCGAAACCTGTTGTTGATTCAGGAGGTAAATCCGGAGGAAGAAGGAAGTCAGTTGGATCAAAATTGGACAAAGTTCACTTGATTGATCTTAGGAGGGCAAATAACACTGAAATCATGCTAACAAAAGTTAGGATGCCACTTTCTGACATGATGGCAGCAGTACTCTCCATGGACGAGTCAGTATTAGATGTAGATCAAGTGGAAAATCTCATTAAATTTTGCCCTACCAGAGAGGAGATGGAGCTTCTAAAGGGGTACTGCGGTGACAAGGACAAACTTGGAAAGTGTGAACAGTACTTTTTGGAGATGATGCAAGTTCCTCGTGTGGAGTCGAAGTTAAGAGTGTTTTCTTTCAAGATTCAGTTCAGCTCTCAGATAGTAGAGTTCAGAAAAAGCCTAAACACTGTAAACTGTGTCTGTCTAGAGGTTAAGAATTCTTTCAAACTGAAGGAGATATTGAAGAGAATTCTTTGCCTGGGAAATATGCTGAACCAAGGAACTGCTAGGGGTTCTGCAATTGGTTTCAGGTTGGATAGTCTTTCAAAACTCACTGATACACGTGCTTCTAACAACAAGATGACTCTTATGCACTATCTTTGTAAGGTTCTTGCTTCGAAGTCACAATCACTTCTTGATTTTCATCTGGACCTTGGTAGCTTGGAAGCTGCGTCTAAGATACAATTGAAATCTTTGGCTGAAGAAATGCAAGCAATAACAAAAGGATTGGAAAAGGTGAGGCAGGAACTAGTCGCATCTGAAAATGATGGCCCCATCTCTGAAACCTTTCGGAAGACGTTGAAAGGATTTGTTACTCTTGCTGAGACAGAGGTGGAATCTGTGACAGTTCTTTATTCGGTGGTGGGTAGAAATGCTGATGCACTTGCACTATATTTTGGTGAGGATCCTGCCCGCTGTCCATTTGAACAA 3708 43.39 VFDCCFSTDILEEDEYKVYLAGIIPRLQDHFPDASFMVFNFSERKRRTKTSDILSQYGMTVMEYPLQYEGCPLLPLEMIHHFIRSSESWLSLERQKNVLLMNCERGGWPILAFMLSGLLLYRKQYDGEQKTLEMVYKQAPRELFHVLSPVNSQPSQMRYLQYISRRNLGFDWPPPDTPLILDCLILRDLPMLDGGKGCRPVVRIYGQDPLTPRNRNPKLIFSSAKMKGRSFHYLQAASKLVKMDVHCHLQGDVVLECIHLAGDLIHEEVMFRVMFHTAFVHSNSLKLNRDEVDVIWDAKEQFPKDFRAEVLFLDADDAVPNLSTVMKSEDKIEIESNSTEEFFEVEEIFSNVVDVQEVKRDYDIQMVHANETDDMDHRAVWKEDAGPPTFQRCNSYGGSQNLDMKVDSNVEAVKDITVDDATFKTDEKLDSGFHVVKDIVVDYGDKKPNPLLFSVNLPRRMGIQELIDNAYDKLEEMKHKGCGEETAITDIESKVPVKKLNPDAWRLKYEKSLSIASRNQPPSTVKLINQTTLAKQKTKQPEDLGFLVKQAKPNTLSRWTSHDKESYINSMHVFYPPSRHSGNPASSISSPTRDSYSYSISKSASACATSGQLPSADTVDEPKSNKVSPIKPLCLASEILTIQSPLGSPGPLPNVVPHQDPTLSQSPTTLLQPPALHANISLLHASSPKSSMIPTSYLHINARSPPPPPPPPPPPPSTRVAPKSSALVSDTTPKHSAPPAPPPPPLHRAQTLLPPPSHGALPFSRLSNAGALPPPPPPPPPTQRAAPPHLTLGRQALPSPTTCVVPSSQPPPICEAPSPPQSTTGPLPLVPSSKPPGGMSPHTGAKGVNSSTDVKTSSILRGRGFSRSISNGVASVPQRSPLKPLHWSKVTRALQGSLWEELQRCGDPETAPEFDVSELETLFSVIVPKPVVDSGGKSGGRRKSVGSKLDKVHLIDLRRANNTEIMLTKVRMPLSDMMAAVLSMDESVLDVDQVENLIKFCPTREEMELLKGYCGDKDKLGKCEQYFLEMMQVPRVESKLRVFSFKIQFSSQIVEFRKSLNTVNCVCLEVKNSFKLKEILKRILCLGNMLNQGTARGSAIGFRLDSLSKLTDTRASNNKMTLMHYLCKVLASKSQSLLDFHLDLGSLEAASKIQLKSLAEEMQAITKGLEKVRQELVASENDGPISETFRKTLKGFVTLAETEVESVTVLYSVVGRNADALALYFGEDPARCPFEQ 1236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18729607 18736748 + MC03g1289 Mch3g1721 684624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1721 1236 SUPERFAMILY Formin homology 2 domain (FH2 domain) 773 1233 - -
Mch3g1721 1236 ProSiteProfiles Formin homology-2 (FH2) domain profile. 872 1236 IPR015425 -
Mch3g1721 1236 MobiDBLite consensus disorder prediction 735 751 - -
Mch3g1721 1236 Pfam C2 domain of PTEN tumour-suppressor protein 174 312 IPR014020 -
Mch3g1721 1236 Pfam Formin Homology 2 Domain 877 1236 IPR015425 -
Mch3g1721 1236 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 24 164 IPR029021 -
Mch3g1721 1236 SMART it6_source 872 1236 IPR015425 -
Mch3g1721 1236 MobiDBLite consensus disorder prediction 648 670 - -
Mch3g1721 1236 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 176 312 IPR035892 -
Mch3g1721 1236 ProSiteProfiles C2 tensin-type domain profile. 176 315 IPR014020 -
Mch3g1721 1236 MobiDBLite consensus disorder prediction 701 720 - -
Mch3g1721 1236 PANTHER FORMIN-J 772 1236 IPR051144 -
Mch3g1721 1236 MobiDBLite consensus disorder prediction 698 855 - -
Mch3g1721 1236 Gene3D - 179 312 - -
Mch3g1721 1236 SMART PTEN_C2_2 174 314 IPR014020 -
Mch3g1721 1236 MobiDBLite consensus disorder prediction 804 835 - -
Mch3g1721 1236 Coils Coil 1155 1175 - -
Mch3g1721 1236 Gene3D Protein tyrosine phosphatase superfamily 1 174 IPR029021 -
Mch3g1721 1236 Gene3D Formin, FH2 domain 872 1236 IPR042201 -
Mch3g1721 1236 MobiDBLite consensus disorder prediction 769 786 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1721 Mch-Chr3:18729607 Mch6g0629 Mch-Chr6:4253783 1.76E-267 dispersed
Mch3g1721 Mch-Chr3:18729607 Mch6g0257 Mch-Chr6:1676940 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1721 K28090 - csv:101221127 1910.19