Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1728 ATGAACCGTACATTTAACCCTTGCCCAGATGAAAATTATGCAAATATTAGGAGATTGATGAGGCAGAGTGAGGACGATCCGAAGAATCTGTTGGACAAGGATCCGCACAGTGATTTCAAGAGCAACCAAGAAGTGAAATGCGGGTTCAGTTCGATTCGAGTAATGGGTATGTTCGTGGTTCTGATGATGTTCATTTCTGTGATCTTTTCGGTGACTGTGGTTCTCAGAGACCCCCCATCGGATGCTGTAATTGAAGTTTCAGATTTGGAGATTTCTCTGGCGAACTCTGATCCAGCAGATTCTAAGGATGGAGATCTTCATTCGGTTATACATCCAGTCGATAAACTGCTCGGTGGCCTTCTTTCTTCCAAACATGGGATGGGTTCGTGTCTGAGTAGGTACAATTCAGTTGCTTATCAACACAAGCTGGCGTACGAACCCTCTTCTTATCTAATCTCCAAATTGCGGAGCTATGAAGATCTTCATAAGCGTTGTGGAGTTTATACTGAATCTTACAACAAAACTTTGGAACAGCTTAGATTTAATGGTAGTAGCAGCTCCTCAGACTGTAAATATCTTCTGTGGATTTCCTTCAGTGGGTTAGGGAATAGAATACTGACCCTTGCTTCGGCATTTCTTTATGCTCTCCTCACAAATCGCGTGTTACTCGTGGACCCTGGAACTGACATGGCTGATCTCTTCTGTGAACCATTTCCTGAGGTTTCTTGGTTTCTTCCCCAAGATTTCCCATTAAAAGGTGAGTTCAACAACTTCAACCAGAACTCTCCTAATTGCTATGGGAAAATACTGAAGAATAGCGCAACGACAGACTCGAGTGAAATGATACTGCCATCTGTTGTCTATCTTCATTTGGTCCATGATTATGATGATGTTGATAAGCTTTTTTTCTGTGATCAAGACCAATCTGTTCTGCAGCAATCACCTTGGCTTGTTATGAGAACAGACAACTATTTTGTGCCGTCTCTCTTTTTGATCCCGTCATTCGAGAAAGAACTCGATGAACTTTTCCCAAATAAAGATACAGTTTTCCACTTCTTGGGTCGATATCTGTTTCACCCCACAAATTCGGTTTGGGGACTCATTACAAGATATTATCAAGCTTATTTGGCTAGAGCAAGTGAGAAAATAGGTATTCAGATTAGAGTGTTCGACATCGGGACTGGACCTTTTCAGCACATCCTGGATCAGGTTCTGGCTTGTACCCTGAAGGAGAATCTGTTGCCAGAAACAAATAAGCAGATGAATATCGTCGGTCCAGCTAGTAATCAGAAGTCAAAGGCCGTGCTGATAACTTCCCTGAGTGCTGGTTACTACGAGAAGTTGAGAGACATTTACTGGGAAAATCCGACTGTGACGGGAGAGAGAATTAGTTTTTACCAACCAAGTCATGAGGAACACCAGCAAACTGAGAAGAGTATACATAACCAGAAGGCATGGGCAGAGATGTATTTGTTAAGTACCACCGACGTATTGGTCACCAGCTCGTGGTCAACGTTCGGATATGTGGCTCAAGGTCTTAGTGGTCTGAAACCATGGATATTATACAAACCCGAGAATCGTACTGCACCCGATCCGCCTTGTCATCGAGCCATGTCCATGGAGCCCTGTTTCCACGCACCGCCTTTCTACGACTGCAAGGCTAAGAAAGGAACGGACACAGGTAAACTTGTTCCTCATGTGAGGCATTGCGAGGACATGGCCTGGGGGCTTAAGCTGGTTGATCATTATGAT 1752 43.78 MNRTFNPCPDENYANIRRLMRQSEDDPKNLLDKDPHSDFKSNQEVKCGFSSIRVMGMFVVLMMFISVIFSVTVVLRDPPSDAVIEVSDLEISLANSDPADSKDGDLHSVIHPVDKLLGGLLSSKHGMGSCLSRYNSVAYQHKLAYEPSSYLISKLRSYEDLHKRCGVYTESYNKTLEQLRFNGSSSSSDCKYLLWISFSGLGNRILTLASAFLYALLTNRVLLVDPGTDMADLFCEPFPEVSWFLPQDFPLKGEFNNFNQNSPNCYGKILKNSATTDSSEMILPSVVYLHLVHDYDDVDKLFFCDQDQSVLQQSPWLVMRTDNYFVPSLFLIPSFEKELDELFPNKDTVFHFLGRYLFHPTNSVWGLITRYYQAYLARASEKIGIQIRVFDIGTGPFQHILDQVLACTLKENLLPETNKQMNIVGPASNQKSKAVLITSLSAGYYEKLRDIYWENPTVTGERISFYQPSHEEHQQTEKSIHNQKAWAEMYLLSTTDVLVTSSWSTFGYVAQGLSGLKPWILYKPENRTAPDPPCHRAMSMEPCFHAPPFYDCKAKKGTDTGKLVPHVRHCEDMAWGLKLVDHYD 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18757322 18760325 + MC03g1295 Mch3g1728 684631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1728 584 PANTHER FUCOSYLTRANSFERASE 2-RELATED 47 581 IPR004938 GO:0005794(PANTHER)|GO:0008107(InterPro)|GO:0008417(PANTHER)|GO:0009969(PANTHER)|GO:0016020(InterPro)|GO:0042546(InterPro)
Mch3g1728 584 Gene3D - 368 537 - -
Mch3g1728 584 Gene3D - 187 240 - -
Mch3g1728 584 Pfam Xyloglucan fucosyltransferase 109 553 IPR004938 GO:0008107(InterPro)|GO:0016020(InterPro)|GO:0042546(InterPro)
Mch3g1728 584 FunFam Galactoside 2-alpha-L-fucosyltransferase 188 239 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1728 K13681 - - csv:101219153 1040.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1728 Mch-Chr3:18757322 Mch9g2109 Mch-Chr9:22017429 7.67E-246 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g2109 . 83 569 Xyloglucan Fucosyltransferase1 AT1G14080 55.3 1.3e-156 550.1
Mch3g1728 . 112 581 Xyloglucan Fucosyltransferase1 AT1G14080 55.8 8.4e-153 537.3
Mch9g2109 . 83 573 Xyloglucan Fucosyltransferase1 AT1G14100 57.8 1.6e-164 576.2
Mch3g1728 . 114 581 Xyloglucan Fucosyltransferase1 AT1G14100 58.0 4.7e-161 564.7
Mch9g2109 . 105 574 Xyloglucan Fucosyltransferase1 AT1G14110 53.3 1.4e-138 490.0
Mch3g1728 . 114 584 Xyloglucan Fucosyltransferase1 AT1G14110 51.5 4.2e-132 468.4
Mch10g0495 . 1 515 Xyloglucan Fucosyltransferase1 AT1G49710 64.6 5.1e-192 667.5
Mch4g0695 . 1 516 Xyloglucan Fucosyltransferase1 AT1G49710 63.5 1.7e-190 662.5
Mch4g1934 . 32 436 Xyloglucan Fucosyltransferase1 AT1G71990 69.1 8.7e-171 596.7
Mch9g2109 . 6 572 Xyloglucan Fucosyltransferase1 AT2G03210 55.6 5.4e-182 634.4
Mch3g1728 . 31 583 Xyloglucan Fucosyltransferase1 AT2G03210 53.8 3.3e-171 598.6
Mch9g2109 . 40 570 Xyloglucan Fucosyltransferase1 AT2G03220 63.7 2.3e-198 688.7
Mch3g1728 . 58 580 Xyloglucan Fucosyltransferase1 AT2G03220 60.7 4.6e-186 647.9
Mch10g0978 . 48 542 Xyloglucan Fucosyltransferase1 AT2G03220 51.5 1.5e-149 526.6
Mch10g0980 . 1 473 Xyloglucan Fucosyltransferase1 AT2G03220 50.6 7.9e-138 487.6
Mch9g2109 . 105 569 Xyloglucan Fucosyltransferase1 AT2G15350 54.9 4.3e-154 541.6
Mch3g1728 . 95 583 Xyloglucan Fucosyltransferase1 AT2G15350 51.4 6.6e-147 517.7
Mch9g2109 . 105 572 Xyloglucan Fucosyltransferase1 AT2G15370 54.2 4.7e-148 521.5
Mch3g1728 . 105 583 Xyloglucan Fucosyltransferase1 AT2G15370 50.7 2.1e-140 496.1
Mch9g2109 . 92 572 Xyloglucan Fucosyltransferase1 AT2G15390 53.9 4.9e-153 538.1
Mch3g1728 . 114 582 Xyloglucan Fucosyltransferase1 AT2G15390 52.5 2.4e-144 509.2
Mch10g0495 . 1 515 Xyloglucan Fucosyltransferase1 AT3G19280 64.4 4.0e-189 657.9
Mch4g0695 . 1 516 Xyloglucan Fucosyltransferase1 AT3G19280 63.7 8.9e-189 656.8
Mch9g2109 . 6 572 Xyloglucan Fucosyltransferase1 AT2G03210 55.6 5.4e-182 634.4
Mch3g1728 . 31 583 Xyloglucan Fucosyltransferase1 AT2G03210 53.8 3.3e-171 598.6
Mch9g2109 . 40 570 Xyloglucan Fucosyltransferase1 AT2G03220 63.7 2.3e-198 688.7
Mch3g1728 . 58 580 Xyloglucan Fucosyltransferase1 AT2G03220 60.7 4.6e-186 647.9
Mch10g0978 . 48 542 Xyloglucan Fucosyltransferase1 AT2G03220 51.5 1.5e-149 526.6
Mch10g0980 . 1 473 Xyloglucan Fucosyltransferase1 AT2G03220 50.6 7.9e-138 487.6
Mch9g2109 . 6 572 Xyloglucan Fucosyltransferase1 AT2G03210 55.6 5.4e-182 634.4
Mch3g1728 . 31 583 Xyloglucan Fucosyltransferase1 AT2G03210 53.8 3.3e-171 598.6
Mch9g2109 . 92 572 Xyloglucan Fucosyltransferase1 AT2G15390 53.9 4.9e-153 538.1
Mch3g1728 . 114 582 Xyloglucan Fucosyltransferase1 AT2G15390 52.5 2.4e-144 509.2
Mch9g2109 . 105 572 Xyloglucan Fucosyltransferase1 AT2G15370 54.2 4.7e-148 521.5
Mch3g1728 . 105 583 Xyloglucan Fucosyltransferase1 AT2G15370 50.7 2.1e-140 496.1
Mch9g2109 . 83 569 Xyloglucan Fucosyltransferase1 AT1G14080 55.3 1.3e-156 550.1
Mch3g1728 . 112 581 Xyloglucan Fucosyltransferase1 AT1G14080 55.8 8.4e-153 537.3
Mch9g2109 . 83 573 Xyloglucan Fucosyltransferase1 AT1G14100 57.8 1.6e-164 576.2
Mch3g1728 . 114 581 Xyloglucan Fucosyltransferase1 AT1G14100 58.0 4.7e-161 564.7
Mch9g2109 . 105 574 Xyloglucan Fucosyltransferase1 AT1G14110 53.3 1.4e-138 490.0
Mch3g1728 . 114 584 Xyloglucan Fucosyltransferase1 AT1G14110 51.5 4.2e-132 468.4
Mch9g2109 . 105 569 Xyloglucan Fucosyltransferase1 AT2G15350 54.9 4.3e-154 541.6
Mch3g1728 . 95 583 Xyloglucan Fucosyltransferase1 AT2G15350 51.4 6.6e-147 517.7
Mch10g0495 . 1 515 Xyloglucan Fucosyltransferase1 AT3G19280 64.4 4.0e-189 657.9
Mch4g0695 . 1 516 Xyloglucan Fucosyltransferase1 AT3G19280 63.7 8.9e-189 656.8
Mch10g0495 . 1 515 Xyloglucan Fucosyltransferase1 AT1G49710 64.6 5.1e-192 667.5
Mch4g0695 . 1 516 Xyloglucan Fucosyltransferase1 AT1G49710 63.5 1.7e-190 662.5
Mch4g1934 . 32 436 Xyloglucan Fucosyltransferase1 AT1G71990 69.1 8.7e-171 596.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012658 0 0 0 0 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 29