Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1733 ATGGGATTTGTTGGGGTATTGTTATTGTTAGTGGGGTTTCTCTGTTTATGGTGGAGCTCATTGGTTGGTGGATATGGTGGAAGGTGGATCAATGGTGCTCATGCTACTTTCTATGGAGGCCCCGATGCCTCTGGTACTTTGGGTGGGGCTTGTGGATATGGGAACGTATACAGCGAGGGATATGGGACTAAAACGACTGCACTGAGTGCAGCCTTGTTCGATGATGGCTTGAGCTGCGGAGCTTGCTTTGAGGTCAAGTGTGTGAATGACCGAAAATGGTGCCTCCCGGGCTCCGTCGTGGTCACCACCACCAACTTCTGTCCGCCCGGTGGGTGGTGCGACCCTTCCCTCCACCATTTCGATCTCTCCCAGCCCGCCTTCCAGACGATTGCTCAATACATTGCCGGTGTCGTCCCCGTGGCTTATCGAAGGGTGCGATGCATGAGGAGAGGAGGCATTAAGTTCAAGATCGAGGGCAATCCATACTTCAATTTGGTGTTGGTAAGCAACGTGGGTGGTGCGGGAGATGTACATGCGGTTTCCATTAAAGGGTCGAGAACTAGTTGGAGAGCAATGACGAGGAATTGGGGTCAGAACTGGCAGAGCAACGATTACCTTGTGGGACAAAGTCTCTCCTTTAAGGTCACCACCAGTGATGGTCGCTCGATTGTCTCTTACAACGTTGCACCTTCTAGGTGGTCGTTTGGACAAAGCTTTTCTGGAAAACAATTCACTTGA 738 51.36 MGFVGVLLLLVGFLCLWWSSLVGGYGGRWINGAHATFYGGPDASGTLGGACGYGNVYSEGYGTKTTALSAALFDDGLSCGACFEVKCVNDRKWCLPGSVVVTTTNFCPPGGWCDPSLHHFDLSQPAFQTIAQYIAGVVPVAYRRVRCMRRGGIKFKIEGNPYFNLVLVSNVGGAGDVHAVSIKGSRTSWRAMTRNWGQNWQSNDYLVGQSLSFKVTTSDGRSIVSYNVAPSRWSFGQSFSGKQFT 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18778987 18780236 + MC03g1300 Mch3g1733 684636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1733 245 Gene3D - 20 147 IPR036908 -
Mch3g1733 245 CDD DPBB_EXPA_N 28 147 - -
Mch3g1733 245 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576(InterPro)
Mch3g1733 245 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
Mch3g1733 245 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576(InterPro)
Mch3g1733 245 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576(InterPro)
Mch3g1733 245 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576(InterPro)
Mch3g1733 245 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576(InterPro)
Mch3g1733 245 SMART dpbb_1 65 142 IPR007112 -
Mch3g1733 245 SUPERFAMILY PHL pollen allergen 149 240 IPR036749 -
Mch3g1733 245 FunFam Expansin 152 244 - -
Mch3g1733 245 PRINTS Expansin signature 87 98 IPR002963 GO:0009664(InterPro)
Mch3g1733 245 PRINTS Expansin signature 60 74 IPR002963 GO:0009664(InterPro)
Mch3g1733 245 PRINTS Expansin signature 127 140 IPR002963 GO:0009664(InterPro)
Mch3g1733 245 PRINTS Expansin signature 151 163 IPR002963 GO:0009664(InterPro)
Mch3g1733 245 PRINTS Expansin signature 198 219 IPR002963 GO:0009664(InterPro)
Mch3g1733 245 PRINTS Expansin signature 110 127 IPR002963 GO:0009664(InterPro)
Mch3g1733 245 PRINTS Expansin signature 227 243 IPR002963 GO:0009664(InterPro)
Mch3g1733 245 PRINTS Expansin signature 99 109 IPR002963 GO:0009664(InterPro)
Mch3g1733 245 PRINTS Expansin signature 163 184 IPR002963 GO:0009664(InterPro)
Mch3g1733 245 Pfam Lytic transglycolase 65 142 IPR009009 -
Mch3g1733 245 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 152 IPR007112 -
Mch3g1733 245 PANTHER EXPANSIN-A15 9 244 IPR002963 GO:0009664(InterPro)
Mch3g1733 245 SUPERFAMILY Barwin-like endoglucanases 29 170 IPR036908 -
Mch3g1733 245 Gene3D - 152 244 IPR036749 -
Mch3g1733 245 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 241 IPR007117 -
Mch3g1733 245 Pfam Expansin C-terminal domain 153 230 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1733 Mch-Chr3:18778987 Mch8g2460 Mch-Chr8:27539492 3.81E-122 dispersed
Mch3g1733 Mch-Chr3:18778987 Mch4g2319 Mch-Chr4:24548151 2.44E-131 wgd
Mch3g1733 Mch-Chr3:18778987 Mch6g0242 Mch-Chr6:1592357 8.59E-118 wgd
Mch3g1733 Mch-Chr3:18778987 Mch9g2116 Mch-Chr9:22063783 2.78E-129 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1733 - - - 0.0