Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch3g1734 | ATGGGAAGGGTTAAGCTCAAAATTAAGAAATTGGAGAGCACTGGCAGCAGGCAGGTCACTTTCTCCAAGAGAAGGCATGGCATTATGAAGAAAGCTCGAGAACTCGCCATTCTCTGCGATATTGACATTGTTCTCCTCATGTTTTCGCCCACTGGAAGGCCCGCGTTCTACCAAGGTGAACGCAGCACCATCGAGGAGGTCATTACAAAATTTGCTCAATTGACTCCACAGGAGAGGGCGAAAAGGAAACTGGAGAGCCTTGAAGCGCTGAAGAAAACATTTAAGAAGTTAGACCACGATGTAAACATAAAAGATTTTGTGGGTTCAAGCTCTCAAGATTTTGAGCAGGAATTGACCAATGAAGTTAGCATGTTGCGTGATCAGATTGCCGAAGCACATAAGAGACTGAGTTATTGGAGGAATCCTGATAATATCAACAATATAGAACATCTGCAGCAGATGGAAGATATGATAAGGGAGTCGCTAAACCAAACACGTCTACACAAGGAAAATTTAAGACGACACCAACTACTGTCACAAGAGTTCACTAGCCAGCTTCAGAGTGGGATGTCTTTACCTTTGATAATGGACGAAATGCAAGCCGCTCAACCCCTGTTATGGCTTCCCAACTATGGCACTCAACAGATTACATTACCAAATGATCCTAACTTTCTGCAACCAGGAGATGTTGAATGCTCCATGGCTACATCGTTTCCAACCTATCCCAGTTACTTCAACCCTGGGAAGCAAATTGAAGTTGGAATATCTGGGCCAGTTGATAGCTTGCCACATGGTGATGGTGCTTTAAATGAATTAAGTGGAACTTCTTGCTCAACACTGCAACTTGGTGAGCAATATACATATCCTACATGTGATGGTTCCAACTTCCAAGATGATAAGAGACTGAAGCTTGATATGGAGATGAACCTACATGCCAATTGTGTGGAGAATCAACTAAATGGCAAGTTGGAGCTCTCTAGATCTCTATTTGATAATGAGCAGCATCATTGGGCTTCTATTCCGGGGTGTAGCATTCCTATGTACCAAAGCAATGGGTACCACCATCAACCAAATTGA | 1077 | 43.18 | MGRVKLKIKKLESTGSRQVTFSKRRHGIMKKARELAILCDIDIVLLMFSPTGRPAFYQGERSTIEEVITKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIKDFVGSSSQDFEQELTNEVSMLRDQIAEAHKRLSYWRNPDNINNIEHLQQMEDMIRESLNQTRLHKENLRRHQLLSQEFTSQLQSGMSLPLIMDEMQAAQPLLWLPNYGTQQITLPNDPNFLQPGDVECSMATSFPTYPSYFNPGKQIEVGISGPVDSLPHGDGALNELSGTSCSTLQLGEQYTYPTCDGSNFQDDKRLKLDMEMNLHANCVENQLNGKLELSRSLFDNEQHHWASIPGCSIPMYQSNGYHHQPN | 358 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 18781206 | 18787557 | - | MC03g1302 | Mch3g1734 | 684637 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch3g1734 | 358 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch3g1734 | 358 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch3g1734 | 358 | Coils | Coil | 115 | 135 | - | - | |
| Mch3g1734 | 358 | FunFam | Agamous-like MADS-box protein AGL30 | 14 | 96 | - | - | |
| Mch3g1734 | 358 | Gene3D | - | 14 | 96 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch3g1734 | 358 | Coils | Coil | 77 | 97 | - | - | |
| Mch3g1734 | 358 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch3g1734 | 358 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch3g1734 | 358 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch3g1734 | 358 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 54 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch3g1734 | 358 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 215 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Mch3g1734 | 358 | CDD | MADS_SRF_like | 2 | 82 | IPR033897 | GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro) | |
| Mch3g1734 | 358 | SUPERFAMILY | SRF-like | 2 | 95 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch3g1734 | Mch-Chr3:18781206 | Mch8g0275 | Mch-Chr8:1878009 | 5.45E-17 | dispersed | |
| Mch3g1734 | Mch-Chr3:18781206 | Mch9g2117 | Mch-Chr9:22066259 | 7.11E-105 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 43089 | PF00319 | SRF-TF | 1.40E-19 | No_clan | Mch | TF |
Pathway information