Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1754 CACTATCAACAGAACCACCACCGTTCAACCACTTTTCCTCTCCAGCTGTTAGAGAAGAAGGAATACGATTCTCATTCTCAGCTGGAGCCGGAACTTCTGGCTGAGACTTCGAAGAAGCCCTCTTCAAAGAGGACCACCACCAAAGACCGCCACACTAAAGTCGACGGTCGTGGCCGCCGCACCCGAATGCCTGCTCTTTGTGCTGCCAGAGTTTTCCAGCTCACCCGCGAGCTCGGCCACAAATCCGACGGGGAGACCATCGAGTGGCTCCTTCAGCAGGCCGAGCCCGCCGTGATCGCCGCCACGGGTACCGGCACCATACCTGCAAACTTCAACTCTCTCAATACGTCGCTAAGAAGGTCCGCCACAAGCATCTCTTTGCCATCCCAACTAAGATCCTCGTCTTACTATCATCCG 417 55.64 HYQQNHHRSTTFPLQLLEKKEYDSHSQLEPELLAETSKKPSSKRTTTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATSISLPSQLRSSSYYHP 139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18879542 18879958 + MC03g1318 Mch3g1754 684657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1754 139 MobiDBLite consensus disorder prediction 23 62 - -
Mch3g1754 139 ProSiteProfiles TCP domain profile. 47 101 IPR017887 -
Mch3g1754 139 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 27 129 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Mch3g1754 139 MobiDBLite consensus disorder prediction 36 60 - -
Mch3g1754 139 Pfam TCP family transcription factor 45 130 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1754 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1754 Mch-Chr3:18879542 Mch9g2397 Mch-Chr9:23740892 1.71E-40 dispersed
Mch3g1754 Mch-Chr3:18879542 Mch6g0228 Mch-Chr6:1519570 1.01E-51 wgd
Mch3g1754 Mch-Chr3:18879542 Mch9g2143 Mch-Chr9:22181244 6.98E-48 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g1660 . 29 256 TCP Transcription Factor Family AT5G23280 60.7 2.2e-63 239.2
Mch4g1635 . 31 251 TCP Transcription Factor Family AT5G23280 61.5 4.2e-62 235.0
Mch9g2143 . 48 152 TCP Transcription Factor Family AT3G47620 86.0 4.9e-43 172.6
Mch3g1754 . 27 135 TCP Transcription Factor Family AT3G47620 77.1 3.3e-39 159.8
Mch9g2397 . 144 226 TCP Transcription Factor Family AT3G47620 90.4 1.2e-36 151.4
Mch9g2397 . 144 236 TCP Transcription Factor Family AT1G69690 82.8 1.3e-36 150.6
Mch8g1386 . 17 280 TCP Transcription Factor Family AT3G27010 54.9 2.3e-54 209.5
Mch9g1660 . 25 253 TCP Transcription Factor Family AT5G08330 57.3 4.1e-59 224.9
Mch4g1635 . 27 251 TCP Transcription Factor Family AT5G08330 62.9 1.6e-58 223.0
Mch8g2352 . 35 148 TCP Transcription Factor Family AT3G02150 70.0 7.7e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43094 PF03634 TCP 2.60E-35 No_clan Mch TF