Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1754 CACTATCAACAGAACCACCACCGTTCAACCACTTTTCCTCTCCAGCTGTTAGAGAAGAAGGAATACGATTCTCATTCTCAGCTGGAGCCGGAACTTCTGGCTGAGACTTCGAAGAAGCCCTCTTCAAAGAGGACCACCACCAAAGACCGCCACACTAAAGTCGACGGTCGTGGCCGCCGCACCCGAATGCCTGCTCTTTGTGCTGCCAGAGTTTTCCAGCTCACCCGCGAGCTCGGCCACAAATCCGACGGGGAGACCATCGAGTGGCTCCTTCAGCAGGCCGAGCCCGCCGTGATCGCCGCCACGGGTACCGGCACCATACCTGCAAACTTCAACTCTCTCAATACGTCGCTAAGAAGGTCCGCCACAAGCATCTCTTTGCCATCCCAACTAAGATCCTCGTCTTACTATCATCCG 417 55.64 HYQQNHHRSTTFPLQLLEKKEYDSHSQLEPELLAETSKKPSSKRTTTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATSISLPSQLRSSSYYHP 139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18879542 18879958 + MC03g1318 Mch3g1754 684657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1754 139 MobiDBLite consensus disorder prediction 23 62 - -
Mch3g1754 139 ProSiteProfiles TCP domain profile. 47 101 IPR017887 -
Mch3g1754 139 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 27 129 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Mch3g1754 139 MobiDBLite consensus disorder prediction 36 60 - -
Mch3g1754 139 Pfam TCP family transcription factor 45 130 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1754 Mch-Chr3:18879542 Mch9g2397 Mch-Chr9:23740892 1.71E-40 dispersed
Mch3g1754 Mch-Chr3:18879542 Mch6g0228 Mch-Chr6:1519570 1.01E-51 wgd
Mch3g1754 Mch-Chr3:18879542 Mch9g2143 Mch-Chr9:22181244 6.98E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43094 PF03634 TCP 2.60E-35 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1754 - - - 0.0