Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1773 CAACTCTTCTTCCTCTCTCTCATTTCTTTCGCCCTCTTGTCTGCAGCCGCTTGTTCCGCTCGTGGCTTGAACATGAACGCCATCGACAGATGCTGGAGATCCAACCCATATTGGAGGAGAAACAGGCAACAGCTAGGTGTTTGTTCGGTGGGTTTTGTGGGGAAAATGACCAACAACATCGGAAGAAACCTCATACGCTACCAAGTCACTGACCCAAGTGACGATCCCATAAACCCTCGCCCGGGTACCCTTAGATATGGCGCCTCTGTCATCAGAGGCAAGGTGTGGATCACATTTCGGAGGGACATGCGTATCACGCTTCACAAACCGCTCATGATTAGTAGCTTCACTGCCATCGATGGCCGAGGTGCGACCGTCCATATTGCAGGGAATGCGTGCCTGATGGTGCTTAGGGCCAGCAATATTATAATCCACGGGCTTATTATCCACCACTGCAGGGCCCAGGCCGCAGCCCAAGTGATGGGCCCAAATTCCAAGATCATTTCCTTAGGACACGTGGATGGAGATGCCATTAGATTAGTTACGGCCTCGAAGGTTTGGATCGACCACAACACGCTGTACCGATGCGAGGACGGATTGCTGGATGTGACCAGAGGGTCCACCGACATTACGATTTCGAACAATTGGTTTAGAGATCAGGACAAGGTTATACTTCTGGGACATGACGATGGTTACGTTAGAGATCGGAGGATGAAAGTGACGGTGGTGTACAACCATTTTGGACCCAACTGCAACCAGAGGATGCCAAGGATTCGATATGGGTATGCACACGTGGCAAACAATATGTACCAAGGGTGGACGCAATACGCGATAGGAGGGAGCATGAATCCAAGCGTGAAGAGTGAAGCCAACCTTTTCATCGCATCAAAATCGAAAGAGGCAAGATATGATTGGGTGGTATGGAGTACAGGAAACGTGGAGGAGACAAAGTGGAATTTTCATTCAGTGAGAGACGTTTTTGAGAATGGGGCTTCGTTTGCACAAATTGGCGTTGGCCGAGGAGTGGTAACGCCAAACTACAACGCGCAGCAACGGTTTCAAGTGGCAGACGCCAAGTGGGTGAGGTCGTTGACCACATCCTCAGGGGCTTTGCGTTGCGCACGAAACTCAAGGTGT 1137 50.66 QLFFLSLISFALLSAAACSARGLNMNAIDRCWRSNPYWRRNRQQLGVCSVGFVGKMTNNIGRNLIRYQVTDPSDDPINPRPGTLRYGASVIRGKVWITFRRDMRITLHKPLMISSFTAIDGRGATVHIAGNACLMVLRASNIIIHGLIIHHCRAQAAAQVMGPNSKIISLGHVDGDAIRLVTASKVWIDHNTLYRCEDGLLDVTRGSTDITISNNWFRDQDKVILLGHDDGYVRDRRMKVTVVYNHFGPNCNQRMPRIRYGYAHVANNMYQGWTQYAIGGSMNPSVKSEANLFIASKSKEARYDWVVWSTGNVEETKWNFHSVRDVFENGASFAQIGVGRGVVTPNYNAQQRFQVADAKWVRSLTTSSGALRCARNSRC 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18972968 18974262 - MC03g1332 Mch3g1773 684676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1773 379 Gene3D - 25 372 IPR012334 -
Mch3g1773 379 Pfam Pectate lyase 117 293 IPR002022 -
Mch3g1773 379 SUPERFAMILY Pectin lyase-like 25 369 IPR011050 -
Mch3g1773 379 PRINTS Pollen allergen Amb family signature 110 126 IPR018082 -
Mch3g1773 379 PRINTS Pollen allergen Amb family signature 276 295 IPR018082 -
Mch3g1773 379 PRINTS Pollen allergen Amb family signature 73 98 IPR018082 -
Mch3g1773 379 PRINTS Pollen allergen Amb family signature 254 273 IPR018082 -
Mch3g1773 379 PRINTS Pollen allergen Amb family signature 174 195 IPR018082 -
Mch3g1773 379 PRINTS Pollen allergen Amb family signature 350 373 IPR018082 -
Mch3g1773 379 PRINTS Pollen allergen Amb family signature 318 342 IPR018082 -
Mch3g1773 379 PANTHER PECTATE LYASE 18-RELATED 24 375 IPR045032 GO:0030570(InterPro)
Mch3g1773 379 SMART amb_all 102 299 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1773 Mch-Chr3:18972968 Mch6g2290 Mch-Chr6:24906742 3.05E-97 dispersed
Mch3g1773 Mch-Chr3:18972968 Mch3g1267 Mch-Chr3:15646586 1.38E-99 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1773 K01728 - csv:101217103 644.039