Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1774 ATGGGGAGGAAGAAGAGAGCTGAAGGTGGTGGTGAGAGCTCCGAATCTCAGGAGGTTGGTGGTGGCCGTGGCTCTCAACGATCAGGTGAAAGGAGAGACCCCTCACAGCAACATGGTGGTGGAAGTGGATACCAGGGTGGTAGAGGTTGGGGTTCCCAAGGGGGCCGTGGAGGTCAAGGCGGTGGCCGTGGCCGAGGAATGTCTCAACATCAGCACTCTGGAGGACCTCCTGAATACCAGGGCAGGGGTAGAGGTGGGCCATATCAGCATGGTGGACGTAGTAACTATGGTGGTGGTAATCGTGGTGGAATGAGTGGTGGCATTGGGGGAGGACCTTCTTCTGGTGGCCCATCCAGGCCACCAGTTCCCGAGCTGCACCAAGCAACCCCAGTGTATCAAGGTGGGGTGACTCAGCCAATCTCATCTGTGGCGAGTTCTTCCTCCAACCCACCTGATACTTCATCTGTAGAACAACAATTTCAGCAGATTTCCATTCAACAGGAATCCGATCCAAGCCAATCAATTCAAGCTGCACCTCCGTCTAGTAAATCTATGAGGTTCCCTCTTAGACCAGGAAAGGGTAGCAATGGCACAAGGTGTATTGTTAAGGCTAACCACTTCTTTGCTGAGCTGCCAGATAAGGATCTTCATCAGTATGATGTTACTATTACACCAGAAGTCACTTCACGTGTGTATAATCGAGCTGTAATGCAGCAGCTAGTGAAATTATACAAGGCTTCTCACCTCGGAGATCGTCTTCCTGCCTATGATGGAAGAAAAAGTTTATATACAGCTGGCCCCCTTCCTTTTGTATCAAATGAGTTCAGAATCACTCTTTTTGATGAAGAAGATGGATCGGGAGGACAGAGACGGGAGAGAGAATTTAAAGTTGTCATCAAATTCGCTGCACGTGCAGACCTACACCATTTAGGACTCTTTCTGCAGGGCAGGCAGGCTGATGCCCCTCAGGAAGCCCTTCAAGTTTTGGATATTGTTTTACGTGAATTGCCTACTTCAAGGCAGGGGTACTGTCCAGTGGCTCGATCATTTTATTCTCCAGATCTTGGACGACGCCAGACACTGGGTGAGGGGCTGGAAAGCTGGCGTGGCTTTTATCAGAGTATCCGCCCTACTCAAATGGGACTTTCTCTAAATATTGATATGTCATCTACTGCTTTCATAGAGCCTTTGCCTGTCATTGAGTTTGTAACTCAGCTTCTCAACCGTGATGTGTCATCCAGACCATTGTCTGATGCTGACCGTGTGAAGATAAAGAAGGCACTTCGAGGTGTCAGGGTTGAAGTGACCCACCGTGGGAATATGCGTAGAAAATATCGCATTTCTGGTTTGACATCACAAGCAACACGGGAGCTAACTTTTCCGGTTGATGAAAGAGGCACTATGAAATCGGTAGTGGAATATTTCTATGAAACATATGGGTTTGCTATTCAACATACTCAATGGCCTTGTCTTCAAGTAGGGAACCAGCAGAGACCAAACTATCTACCTATGGAAGTATGTAAAATTGTTGAAGGCCAGAGGTATTCCAAGAGGCTCAATGAAAGACAGATAACTGCTCTGCTCAAGGTTACATGCCAACGACCTCAAGATAGAGAGGCAGACATTACGCAGACTGTTCGTCATAATGCATATCATAGGGATCCATATGCACAGGAGTTTGGAATTAAGATAAGTGAGAAGCTTGCTTCTGTTGAAGCTCGCATTCTTCCTCCACCATGGCTAAAATATCACGATACAGGCAGGGAAAAAGATTGCTTGCCACAAGTTGGACAGTGGAATATGATGAATAAGAAAATGTTCAATGGTGGTACGGTTAACAACTGGATGTGCATCAATTTCTCTCGCTATGTGCAAGACAGTGTCACTCGTGGGTTTTGTTTTGAGCTTGCTCAAATGTGTTACATTTCTGGCATGGCGTTCAATCCGGAACCAGTGCTTCCTCCTATTTTTGCTCGTCCTGATCAAGTTGAAAAGGCCCTTAAAACTCGGTATCATGATGCAATGAGCATTCTCCAACCCCAGAAAAAGGAGCTTGATTTGCTTATTGTTGTTTTACCAGATAACAATGGATCTCTTTATGGTGACTTAAAACGTATCTGTGAGACAGATCTTGGCCTCGTTTCCCAGTGCTGTTTGACAAAACATGTCTTCAAAATGAGTAAACAGTACTTGGCCAATGTTGCCTTGAAGATTAATGTCAAGGTTGGGGGAAGGAACACTGTTCTTGTTGATGCGTTATCTAGGCGTATACCCTTGGTTAGTGACCGGCCTACCATTATATTTGGTGCTGATGTAACCCATCCTCATCCGGGGGAAGACTCAAGTCCATCCATTGCTGCTGTTGTGGCTTCTCAAGATTGGCCGGAAGTTACAAAATATGCTGGTTTAGTCAGTGCTCAAGCCCATAGGCAAGAGCTTATTCAAGATCTATTCAAAACATGGCAAGATCCCGTAAGGGGGACAGTAACGGGTGGAATGATCAAGGAACTCCTCATCTCCTTCCGTAGAGCAACTGGACAGAAACCCCAACGCATCATATTTTACAGGCATTTTTTTGTTGTTTCTTATCTAATGGATGGAGTTAGTGAAGGACAATTCTACCAAGTTTTGTTGCATGAGCTGGATGCCATTCGGAAGGCATGTGCTTCTTTGGAACCAAACTACCAACCTCCAGTGACTTTTGTTGTGGTACAGAAGCGTCATCACACTAGGTTGTTTGCAAATAACCATAATGACCGCCATGCGGTTGACAAGAGTGGAAACATATTACCTGGTACTGTTGTTGACTCCAAAATTTGTCATCCCACTGAATTTGACTTCTACCTGTGCAGCCATGCTGGAATCCAGGCAGGTACAAGTCGTCCTGCTCATTACCATGTTTTGTGGGACGAGAACAAGTTCACAGCTGATGGATTGCAGACACTAACGAATAACCTTTGCTATACGTATGCAAGGTGTACCCGTTCTGTTTCTATTGTGCCCCCAGCGTATTACGCTCATCTTGCTGCATTCCGAGCTCGTTTTTATATGGAACCTGAAACCTCTGATAGTGGGTCGATCAGCAGCGGTGCTGCTGCTGGACGAGGTGGAGTTGGTGGTGCTGCTGGTGCTGGTGCTGGTGCTCGCAGTACACGGGCTCCGGGTTTGAATGCCGCTGTTCGTCCATTGCCGGCCCTGAAAGAGAATGTTAAGAGGGTTATGTTCTATTGCTGA 3234 46.57 MGRKKRAEGGGESSESQEVGGGRGSQRSGERRDPSQQHGGGSGYQGGRGWGSQGGRGGQGGGRGRGMSQHQHSGGPPEYQGRGRGGPYQHGGRSNYGGGNRGGMSGGIGGGPSSGGPSRPPVPELHQATPVYQGGVTQPISSVASSSSNPPDTSSVEQQFQQISIQQESDPSQSIQAAPPSSKSMRFPLRPGKGSNGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRVYNRAVMQQLVKLYKASHLGDRLPAYDGRKSLYTAGPLPFVSNEFRITLFDEEDGSGGQRREREFKVVIKFAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTSRQGYCPVARSFYSPDLGRRQTLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIEFVTQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFAIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPQDREADITQTVRHNAYHRDPYAQEFGIKISEKLASVEARILPPPWLKYHDTGREKDCLPQVGQWNMMNKKMFNGGTVNNWMCINFSRYVQDSVTRGFCFELAQMCYISGMAFNPEPVLPPIFARPDQVEKALKTRYHDAMSILQPQKKELDLLIVVLPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKTWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRHFFVVSYLMDGVSEGQFYQVLLHELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHNDRHAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQAGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSISSGAAAGRGGVGGAAGAGAGARSTRAPGLNAAVRPLPALKENVKRVMFYC 1077
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18979908 18991639 + MC03g1333 Mch3g1774 684677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1774 1077 Pfam Piwi domain 688 1017 IPR003165 GO:0003676(InterPro)
Mch3g1774 1077 Gene3D - 756 1077 IPR036397 GO:0003676(InterPro)
Mch3g1774 1077 Gene3D - 575 750 - -
Mch3g1774 1077 Pfam Argonaute linker 1 domain 346 395 IPR014811 -
Mch3g1774 1077 Pfam Argonaute linker 2 domain 537 583 IPR032472 -
Mch3g1774 1077 Pfam Mid domain of argonaute 594 669 IPR032473 -
Mch3g1774 1077 SUPERFAMILY PAZ domain 202 548 IPR036085 GO:0005515(InterPro)
Mch3g1774 1077 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 188 1024 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Mch3g1774 1077 SMART DUF1785_2 344 396 IPR014811 -
Mch3g1774 1077 SMART PAZ_2_a_3 401 533 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Mch3g1774 1077 MobiDBLite consensus disorder prediction 131 181 - -
Mch3g1774 1077 Pfam PAZ domain 401 527 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Mch3g1774 1077 ProSiteProfiles PAZ domain profile. 398 511 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Mch3g1774 1077 FunFam Argonaute 10 575 750 - -
Mch3g1774 1077 SMART Piwi_a_2 687 1018 IPR003165 GO:0003676(InterPro)
Mch3g1774 1077 FunFam Protein argonaute-2 390 516 - -
Mch3g1774 1077 CDD PAZ_argonaute_like 396 510 - -
Mch3g1774 1077 CDD Piwi_ago-like 555 1017 IPR045246 -
Mch3g1774 1077 Gene3D paz domain 390 515 - -
Mch3g1774 1077 Pfam N-terminal domain of argonaute 199 333 IPR032474 -
Mch3g1774 1077 SUPERFAMILY Ribonuclease H-like 681 1018 IPR012337 -
Mch3g1774 1077 Pfam Glycine-rich region of argonaut 74 180 IPR024357 -
Mch3g1774 1077 ProSiteProfiles Piwi domain profile. 687 1018 IPR003165 GO:0003676(InterPro)
Mch3g1774 1077 MobiDBLite consensus disorder prediction 1 190 - -
Mch3g1774 1077 FunFam protein argonaute 10-like 756 1077 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1774 Mch-Chr3:18979908 Mch5g0550 Mch-Chr5:3690938 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1774 K11593 - csv:101212130 1805.42