Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1787 TCTAGTTACTTAGAAATGGCTGCTTTTGAAAAAGACGATATACCAATGCTATCAAACACCGATCCACCAATGTTAGATGAACAAGTGGGTTCTTATTTTCCCTCATTTGCATCATTGACCCGGAGTTCATCACTATCAATTCCAACAACTTCCTCTGGGTTGTATGGTAATGAGGCAAATCTTGTTGGTCATACTGGTCCCCTACGAAGTGATAGAAAAAGTTCATTCATGGTGAGTGGTTCAACATATACTGGCCGCAAACCTGAAAGACTCTCACAGTCAAATCCGGGTGTGCCTGAAAGCAAAACTGCAGAGCCACTGGCAGACAAATTTCCTTCTTTCAAGGCAAAGGATGAGTCTGATTGGTCCATTCATAACTATGCTGGCAGAAACGAACACTTAATAAAGTCTGGCCAGTTGGGAATGTGCAGTGATCCTTTTTGTATAACTTGCCCGACATACAACTTGAAGGCATCGAAACATAAAAGCTTAAGAATGTCGGGCATATTTGACCACAAGTTCCAGAGTGATTTCTTTGGAGATGGGAAAGGTTGGGCAGGGAAGTTTCGGACCTTCTGGTCATTCTTGCTTCCATATATTCCTGGAGTTATGAATCCTCATGCAAAAGTTGTTCAACAATGGAACAAGTTTTTTGTCATTTCTTGCTTAGTGGCGATCTTCTTGGACCCATTATTCTTCTTCTTGCTTGCTGTCAAAGAGGATAAAAAGTGCATTGTTATTAACTGGCCCTTGACCACAACACTGGTGGCTTTCCGTAGCCTTACTGATTTTATCTATTTACTAAACATGCTTCTCCAGTTTAGGTTGGCGTACGTGTCACCAGAATCCTTAGTTGTTGGTGCAGGTGAATTAGTTGACCAACCGAAGGAAATTGCTCTGCATTACATTAAAGGAAAATTTTTTGTAGATTTGCTTGTTGTTTTGCCACTGCCTCAGATAATAGTTTTTCTGGTCCTTCCAAAGTCTTTGGGGTCATCTGGAGCAAACTATGCTAAAAATCTACTACGCAATGCAGTTACTGTTCAATATATACCCAGACTGTATAGGTTTCTACCTCTTCTTGCTGGTCAGTCTCCAAGTGGCTTTGTATTTGAGACAGCGTGGGCAAATTTTGTTATCAACCTTCTCACCTTTATGTTGGCTGGTCATATTGTTGGGTCTTTCTGGTATCTCTTAGGGCTTCAGGGTGTGAATCGATGTTTTCGAGATGCCTGCAATAAAACTGGAAGTAGAGACTGCTTACAGTATATAGATTGTGGACATGGGGATGAAGCTTGGAGTCCTGATCATGAACCGCGGAGAAAATGGGGAGAAAATGGGAATGCTAAGGCATGTTTTGCTAAAGAAGATTTTGATTATGGAATCTACCTTCAGGCTGTAAATCTTACTACAAAGAATAGTATAATCACCAGATACACTTACTCACTGTTTTGGGGATTCCAGCAAATCAGTACTCTGGCTGGGAATCAAGTTCCTAGCTACTATGAATGGGAAGTCCTTTTCACCATGGGCATTATTGGGCTTGGTCTGTTGCTGTTTGCGCTTCTCATAGGGAATATGCAGAACTTTCTCCAGGCTCTTGGAAGAAGGAGGTTAGAAATGTCATTAAGACGTCGTGATGTTGAGCAGTGGATGGAGCATCGTCGCTTGCCAGAAAATTTAAGAAGGCAAGTACGACAGGCTGAAAGGTACAATTGGGCTTCTACAAGAGGCGTAAATGAAGAAAGGATTTTTGAAAATCTGCCTGAGGACCTACAAAGAAACATAAGACGACATCTCTTTAGATTTGTCAACAAGGTTCGAATCTTTGCACTGATGGATTATGAGCCAATTTTGGATGCAATACGTGAGAGACTACGACAAAAGACATACATAGAAGGGAGTGAAGTTTTCTCTTCTGGAGATATCATTGAGAAGATGGTTTTCATTGTACGGGGGAAAATGGAGAGCCGTGTAGATGGGATTGTGGTTCCCTTATCTGAAGGAGATGTCTGCGGTGAGGAACTTCTAACATGGTGTCTTGAGCATTCCTCCATGAACAGAGATATGAAGCGCCTTCAAGTTCCAGCACCAAGATTGGTCAGCAACCGGACAGTAAGGTGCTTAACAAATGTTGAAGCATTTTCTCTCCGGGCTGCAGACCTTGAAGAAGTGACTAGTATGTTCTCTAGATTCTTGCGAAATCCACGTGTTCAAGGAGCCATAAGGTACGAATCGCCCTACTGGAGATACCTAGCAACAACACGTATTCAGGTAGCTTGGAGATACCGGAAAAAGCGTCTATCTCGAGCTCAAACCTCTCGATCTAACAACTAA 2337 42.15 SSYLEMAAFEKDDIPMLSNTDPPMLDEQVGSYFPSFASLTRSSSLSIPTTSSGLYGNEANLVGHTGPLRSDRKSSFMVSGSTYTGRKPERLSQSNPGVPESKTAEPLADKFPSFKAKDESDWSIHNYAGRNEHLIKSGQLGMCSDPFCITCPTYNLKASKHKSLRMSGIFDHKFQSDFFGDGKGWAGKFRTFWSFLLPYIPGVMNPHAKVVQQWNKFFVISCLVAIFLDPLFFFLLAVKEDKKCIVINWPLTTTLVAFRSLTDFIYLLNMLLQFRLAYVSPESLVVGAGELVDQPKEIALHYIKGKFFVDLLVVLPLPQIIVFLVLPKSLGSSGANYAKNLLRNAVTVQYIPRLYRFLPLLAGQSPSGFVFETAWANFVINLLTFMLAGHIVGSFWYLLGLQGVNRCFRDACNKTGSRDCLQYIDCGHGDEAWSPDHEPRRKWGENGNAKACFAKEDFDYGIYLQAVNLTTKNSIITRYTYSLFWGFQQISTLAGNQVPSYYEWEVLFTMGIIGLGLLLFALLIGNMQNFLQALGRRRLEMSLRRRDVEQWMEHRRLPENLRRQVRQAERYNWASTRGVNEERIFENLPEDLQRNIRRHLFRFVNKVRIFALMDYEPILDAIRERLRQKTYIEGSEVFSSGDIIEKMVFIVRGKMESRVDGIVVPLSEGDVCGEELLTWCLEHSSMNRDMKRLQVPAPRLVSNRTVRCLTNVEAFSLRAADLEEVTSMFSRFLRNPRVQGAIRYESPYWRYLATTRIQVAWRYRKKRLSRAQTSRSNN 778
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19059399 19073393 + MC03g1345 Mch3g1787 684690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1787 778 Gene3D - 211 531 - -
Mch3g1787 778 SUPERFAMILY cAMP-binding domain-like 537 733 IPR018490 -
Mch3g1787 778 ProSiteProfiles cAMP/cGMP binding motif profile. 622 677 IPR000595 -
Mch3g1787 778 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 195 772 - -
Mch3g1787 778 Pfam Ion transport protein 216 535 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch3g1787 778 SUPERFAMILY Voltage-gated potassium channels 209 532 - -
Mch3g1787 778 MobiDBLite consensus disorder prediction 72 100 - -
Mch3g1787 778 MobiDBLite consensus disorder prediction 65 110 - -
Mch3g1787 778 CDD CAP_ED 609 725 IPR000595 -
Mch3g1787 778 Gene3D Jelly Rolls 607 731 IPR014710 -
Mch3g1787 778 Gene3D Helix hairpin bin 532 601 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1787 Mch-Chr3:19059399 Mch8g1592 Mch-Chr8:12749781 3.20E-125 dispersed
Mch3g1787 Mch-Chr3:19059399 Mch6g1858 Mch-Chr6:21088339 1.25E-125 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1787 K05391 - csv:101215903 1313.13