Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch3g1788 | ATGGACTACGGCAGTGGAGGCGGCGGCTCCGGCTGGGACAATGATTCCTCCTCCGACCCTCAACGCAAGAAGAAACGCTACCACCGGCACACTGCCAACCAGATTCAGAGGCTCGAGGCAATGTTCAAAGAGTGCCCTCACCCGGATGAGAAGCAGAGATTACAGTTGAGCAGAGAGCTGGGATTGGCTCCTCGCCAAATCAAATTTTGGTTCCAGAACAGGAGAACCCAGATGAAGGCTCAACATGAAAGGGCAGATAATAGTGCACTGCGGACAGAGAACGACAAGATTCGATGTGAGAACATAGCCATCAGAGAGGCACTAAAAAATGTCATATGTCCCTCCTGCGGTGGCCCTCCCATTCAGGACCCCTACTTCGACGAGCAGAAATTACGAATCGAAAATGCCCATTTGAAAGAAGAGCTTGATAGAGTATCTAGCATTGCGGCCAAGTACATTGGGAGGCCAATTTCTCAACTCCCACCCATTCAGCCTTCTCATTTTTCTTCATTAGAGTTATCCATGGGTAGTTTTGCCTCCCAAGAAATGGGTAGTCTCTCTCTTGATCTTGATTTACTTCCTGCAAGTTCTTCAAGCGTTCCCAGTTTGCCATACCACCATCCAATTCACTTCTCCGACGTGGATAAGTCCCTCATGACTGAAGTTGCCACAAATGCCATGGGAGAGCTGCTCAGACTTTCCCAAACTAATGAACCATTCTGGATGAAATCACCGAGTGATGCCCGAGATGTTCTCGACCTTGAAAGCTATCAACAAGCTTTTCCAAGATCCAACACTCAGTTGAAGAATCTCCATTCTCGCACCGAGGCATCTAGAGATTCAGGCATGGTGATCATGAACAGTGCATCATTGGTTGACATGTTAATGGACTCGACCAAATGGACAGAGTTATTTCCCACAATTGTCTCGATTGCAAGAACAATCGAAGTTATATCAACCGGAATGTTGGGAAGTCATAGTGGCTCCTTGCAACTGATGTACCAAGAACTGCATCTTCTTTCCCCATTAGTTTCGACTCGCCAGTTTTACGTTCTCAGACATTGTCAACAAATAGAGCAAGGCACGTGGGCTGTAGTAGATGTTTCCTATAATATCCCCAGAGAGAACCAAATAGTCTCTCGAGATTCTCAATGTCACCGGTTTCCCTCCGGCTGCTTGATCCAAGACATGCCAAATGGTTATTCCAAGGTTACTTGGATTGAGCATGTGGAAATCGAAGACAAAGGCTCTACTCATTGGCTTTTCAGAGATATTATTCATAATGGGTTAGCCTTTTGTGCTGAACGGTGGCTTGCAACTCTTCAACGGATGTGTGAAAGGTTTGCCTGTTTAATGGTGGCTGGTAGTTCCAGTCGAGATCTTGGCGGAGTCATTACATCATTAGAGGGAAAGAAAAGCATGATGAAACTAGCACAGCGGATGGTGAACAATTTCTGTGCTAGCATTAGCACATCTCATGGCCACCGTTGGACCACCCTTTCGGGGATGAATGAGGTTGGTGTTCGTGTCACAGTGCATAAAAGCATGGATCCTGGCCAATCCAATGGCGTGGTTCTTAGTGCAGCTACAACGATATGGCTCCCAGTTTCTCCTCAAACCATCTTTAACTTCTTTAAGAATGACAGAACTAGATCTCAGTGGGATGTTCTCTCGGATGGCAATCCAGTTCAAGAGGTTGCTCATATAGCCAACGGATCCCATCCAGGGAACTGCATATCTGTTCTTAGAGCTTTCAATACGAGTCAGAACAACATGTTGATTCTTCAGGAGAGTTGCATAGACTCGTCTGGATCACTTGTTGTGTACTGCCCTGTGGATCTACCAGCCATGAATGTTGCAATGAGTGGGGAGGACCCATCAAGTATTCCTTTACTGCCGTCAGGATTCACAATTTTACCGGACGGTCGACGGGACCCCGGTGAGGGGGCGTCGAGCAGCTCGGACGTGCACAGTAGGTCGAGGGGCTCACTGGTGACGGTAGCATTTCAAATACTAGTGAGCAGCTTGCCATCGGGAAAGCTAAATTTGGAGTCAGTGACGACAGTTAATAACCTCATCAGCACCACTGTCCACCAGATCAAGACAGCCTTAAACTGCCATACCATGGCGTTCTCTACAACGGCTAACAACTGCTCTGTAGTTTCTTCTTTTCTTTCTAGTAACTCTTCGACAAGGCATAAGAGAGTAAGAAACATTAGCATTTGTGCCAAGCAAAGCACGAGTAGTTCGTTGCAGTTGCAGTACAGAAAACTCGGGGACTCTGACCTTCAAGTTTCTGAAGTTACGCTTGGAACGATGACTTTTGGGCAACAAAACACCGAGAAAGAAGCCCACGAACAATTGAGTTATGCTTATGAACATGGGATTAATATTATAGATACTGCAGAGGCATATCCAGTTCCAATGAAACAAGAGACGCAGGGAAGAACAGACATCTACATTGGTAACTGGCTCAAGTCAAAGCCCAGAGATAAGATTATTTTGGCCACAAAAGTCTGCGGTTACTCAGAGCGGTCATCTTATCTGCGCGAAAATGCCAAAGTTTTACGGGTTGATCGTTATAATATTAGAGAAAGTGTAGAGAAAAGTCTCAAGCGGCTGAACACTGACTACATAGACTTACTGCAAATTCATTGGCCAGACCGCTATGTGGCCTTATTTGGTGATTTTTCTTACGATCCTTCAAAATGGAGGGCAAGTGTGCCATTTACAGAGCAACTGAGGGCATTTCAGGAACTTATTGAAGAAGGAAAGATACGCTACATTGGTGTTTCAAATGAAACTTCATATGGAGTGATGGAATTTGTTCACGCAGCAAAAATTGAAGGATTGCCAAAGATCGTTAGTATCCAAAATAATTACAGTCTTATAAACAGATGCCGCTTTGAAGTCGATCTTGCTGAGGTTTGTCATCCAAATAACTACAATATTGGCTTGCTTGGTTATTCTCCGTTGGGTGGTGGAACTCTGAGCGGCAAATACTTGGATGCCAATTCTCAAGGTGGAGGAAAAGGAAGGCTGAGCCTCTTCCCAGGCTACATGGGTAGATACAACAAATCTATTGCTAAGGAAGCAACAGCTCATTATGTACAGTTAGCCAAAAAGTACGGCCTAACTCCAGTACAGCTTGCGCTTGGGTTTGCTCGAGACCGTCCATTTATGACGAGTTCAATAATAGGTGCAACGTCCATGGACCAACTCAGAGAAGACCTTAATGCTTTCACGATGACCGAGCGGCCATTGCCGGCAGAACTCATGGCAGACATAGAAGCTATTTTCCAGAGATACAAAGATCCAGCTATC | 3324 | 45.61 | MDYGSGGGGSGWDNDSSSDPQRKKKRYHRHTANQIQRLEAMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSALRTENDKIRCENIAIREALKNVICPSCGGPPIQDPYFDEQKLRIENAHLKEELDRVSSIAAKYIGRPISQLPPIQPSHFSSLELSMGSFASQEMGSLSLDLDLLPASSSSVPSLPYHHPIHFSDVDKSLMTEVATNAMGELLRLSQTNEPFWMKSPSDARDVLDLESYQQAFPRSNTQLKNLHSRTEASRDSGMVIMNSASLVDMLMDSTKWTELFPTIVSIARTIEVISTGMLGSHSGSLQLMYQELHLLSPLVSTRQFYVLRHCQQIEQGTWAVVDVSYNIPRENQIVSRDSQCHRFPSGCLIQDMPNGYSKVTWIEHVEIEDKGSTHWLFRDIIHNGLAFCAERWLATLQRMCERFACLMVAGSSSRDLGGVITSLEGKKSMMKLAQRMVNNFCASISTSHGHRWTTLSGMNEVGVRVTVHKSMDPGQSNGVVLSAATTIWLPVSPQTIFNFFKNDRTRSQWDVLSDGNPVQEVAHIANGSHPGNCISVLRAFNTSQNNMLILQESCIDSSGSLVVYCPVDLPAMNVAMSGEDPSSIPLLPSGFTILPDGRRDPGEGASSSSDVHSRSRGSLVTVAFQILVSSLPSGKLNLESVTTVNNLISTTVHQIKTALNCHTMAFSTTANNCSVVSSFLSSNSSTRHKRVRNISICAKQSTSSSLQLQYRKLGDSDLQVSEVTLGTMTFGQQNTEKEAHEQLSYAYEHGINIIDTAEAYPVPMKQETQGRTDIYIGNWLKSKPRDKIILATKVCGYSERSSYLRENAKVLRVDRYNIRESVEKSLKRLNTDYIDLLQIHWPDRYVALFGDFSYDPSKWRASVPFTEQLRAFQELIEEGKIRYIGVSNETSYGVMEFVHAAKIEGLPKIVSIQNNYSLINRCRFEVDLAEVCHPNNYNIGLLGYSPLGGGTLSGKYLDANSQGGGKGRLSLFPGYMGRYNKSIAKEATAHYVQLAKKYGLTPVQLALGFARDRPFMTSSIIGATSMDQLREDLNAFTMTERPLPAELMADIEAIFQRYKDPAI | 1108 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 19077146 | 19089346 | + | MC03g1346 | Mch3g1788 | 684691 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch3g1788 | 1108 | SUPERFAMILY | NAD(P)-linked oxidoreductase | 753 | 1104 | IPR036812 | - | |
Mch3g1788 | 1108 | FunFam | Homeobox-leucine zipper protein GLABRA 2 | 221 | 446 | - | - | |
Mch3g1788 | 1108 | SMART | START_1 | 221 | 447 | IPR002913 | GO:0008289(InterPro) | |
Mch3g1788 | 1108 | Pfam | Aldo/keto reductase family | 768 | 1099 | IPR023210 | - | |
Mch3g1788 | 1108 | ProSitePatterns | 'Homeobox' domain signature. | 56 | 79 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Mch3g1788 | 1108 | ProSiteProfiles | START domain profile. | 212 | 450 | IPR002913 | GO:0008289(InterPro) | |
Mch3g1788 | 1108 | SUPERFAMILY | Bet v1-like | 214 | 448 | - | - | |
Mch3g1788 | 1108 | SMART | HOX_1 | 22 | 85 | IPR001356 | GO:0003677(InterPro) | |
Mch3g1788 | 1108 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 | 13 | 706 | IPR042160 | - | |
Mch3g1788 | 1108 | SUPERFAMILY | Bet v1-like | 469 | 701 | - | - | |
Mch3g1788 | 1108 | FunFam | NADP(H)-dependent aldo-keto reductase | 753 | 1108 | - | - | |
Mch3g1788 | 1108 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Mch3g1788 | 1108 | Gene3D | - | 12 | 97 | - | - | |
Mch3g1788 | 1108 | CDD | START_ArGLABRA2_like | 216 | 446 | - | - | |
Mch3g1788 | 1108 | Gene3D | - | 235 | 447 | IPR023393 | - | |
Mch3g1788 | 1108 | CDD | AKR_Tas-like | 765 | 1099 | - | - | |
Mch3g1788 | 1108 | Gene3D | - | 753 | 1108 | IPR036812 | - | |
Mch3g1788 | 1108 | Pfam | Homeodomain | 24 | 79 | IPR001356 | GO:0003677(InterPro) | |
Mch3g1788 | 1108 | CDD | homeodomain | 24 | 82 | IPR001356 | GO:0003677(InterPro) | |
Mch3g1788 | 1108 | PRINTS | Aldo-keto reductase signature | 869 | 887 | IPR020471 | GO:0016491(InterPro) | |
Mch3g1788 | 1108 | PRINTS | Aldo-keto reductase signature | 917 | 934 | IPR020471 | GO:0016491(InterPro) | |
Mch3g1788 | 1108 | SUPERFAMILY | Homeodomain-like | 8 | 81 | IPR009057 | - | |
Mch3g1788 | 1108 | ProSiteProfiles | 'Homeobox' domain profile. | 21 | 81 | IPR001356 | GO:0003677(InterPro) | |
Mch3g1788 | 1108 | FunFam | Homeobox-leucine zipper protein HDG1 | 11 | 97 | - | - | |
Mch3g1788 | 1108 | Pfam | START domain | 222 | 447 | IPR002913 | GO:0008289(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch3g1788 | Mch-Chr3:19077146 | Mch8g2240 | Mch-Chr8:25551823 | 4.74E-252 | dispersed | |
Mch3g1788 | Mch-Chr3:19077146 | Mch4g0233 | Mch-Chr4:1496817 | 7.88E-221 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43099 | PF00248 | Aldo_ket_red | 7.50E-68 | No_clan | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch3g1788 | K09338 | - | csv:101215660 | 1259.59 |