Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1788 ATGGACTACGGCAGTGGAGGCGGCGGCTCCGGCTGGGACAATGATTCCTCCTCCGACCCTCAACGCAAGAAGAAACGCTACCACCGGCACACTGCCAACCAGATTCAGAGGCTCGAGGCAATGTTCAAAGAGTGCCCTCACCCGGATGAGAAGCAGAGATTACAGTTGAGCAGAGAGCTGGGATTGGCTCCTCGCCAAATCAAATTTTGGTTCCAGAACAGGAGAACCCAGATGAAGGCTCAACATGAAAGGGCAGATAATAGTGCACTGCGGACAGAGAACGACAAGATTCGATGTGAGAACATAGCCATCAGAGAGGCACTAAAAAATGTCATATGTCCCTCCTGCGGTGGCCCTCCCATTCAGGACCCCTACTTCGACGAGCAGAAATTACGAATCGAAAATGCCCATTTGAAAGAAGAGCTTGATAGAGTATCTAGCATTGCGGCCAAGTACATTGGGAGGCCAATTTCTCAACTCCCACCCATTCAGCCTTCTCATTTTTCTTCATTAGAGTTATCCATGGGTAGTTTTGCCTCCCAAGAAATGGGTAGTCTCTCTCTTGATCTTGATTTACTTCCTGCAAGTTCTTCAAGCGTTCCCAGTTTGCCATACCACCATCCAATTCACTTCTCCGACGTGGATAAGTCCCTCATGACTGAAGTTGCCACAAATGCCATGGGAGAGCTGCTCAGACTTTCCCAAACTAATGAACCATTCTGGATGAAATCACCGAGTGATGCCCGAGATGTTCTCGACCTTGAAAGCTATCAACAAGCTTTTCCAAGATCCAACACTCAGTTGAAGAATCTCCATTCTCGCACCGAGGCATCTAGAGATTCAGGCATGGTGATCATGAACAGTGCATCATTGGTTGACATGTTAATGGACTCGACCAAATGGACAGAGTTATTTCCCACAATTGTCTCGATTGCAAGAACAATCGAAGTTATATCAACCGGAATGTTGGGAAGTCATAGTGGCTCCTTGCAACTGATGTACCAAGAACTGCATCTTCTTTCCCCATTAGTTTCGACTCGCCAGTTTTACGTTCTCAGACATTGTCAACAAATAGAGCAAGGCACGTGGGCTGTAGTAGATGTTTCCTATAATATCCCCAGAGAGAACCAAATAGTCTCTCGAGATTCTCAATGTCACCGGTTTCCCTCCGGCTGCTTGATCCAAGACATGCCAAATGGTTATTCCAAGGTTACTTGGATTGAGCATGTGGAAATCGAAGACAAAGGCTCTACTCATTGGCTTTTCAGAGATATTATTCATAATGGGTTAGCCTTTTGTGCTGAACGGTGGCTTGCAACTCTTCAACGGATGTGTGAAAGGTTTGCCTGTTTAATGGTGGCTGGTAGTTCCAGTCGAGATCTTGGCGGAGTCATTACATCATTAGAGGGAAAGAAAAGCATGATGAAACTAGCACAGCGGATGGTGAACAATTTCTGTGCTAGCATTAGCACATCTCATGGCCACCGTTGGACCACCCTTTCGGGGATGAATGAGGTTGGTGTTCGTGTCACAGTGCATAAAAGCATGGATCCTGGCCAATCCAATGGCGTGGTTCTTAGTGCAGCTACAACGATATGGCTCCCAGTTTCTCCTCAAACCATCTTTAACTTCTTTAAGAATGACAGAACTAGATCTCAGTGGGATGTTCTCTCGGATGGCAATCCAGTTCAAGAGGTTGCTCATATAGCCAACGGATCCCATCCAGGGAACTGCATATCTGTTCTTAGAGCTTTCAATACGAGTCAGAACAACATGTTGATTCTTCAGGAGAGTTGCATAGACTCGTCTGGATCACTTGTTGTGTACTGCCCTGTGGATCTACCAGCCATGAATGTTGCAATGAGTGGGGAGGACCCATCAAGTATTCCTTTACTGCCGTCAGGATTCACAATTTTACCGGACGGTCGACGGGACCCCGGTGAGGGGGCGTCGAGCAGCTCGGACGTGCACAGTAGGTCGAGGGGCTCACTGGTGACGGTAGCATTTCAAATACTAGTGAGCAGCTTGCCATCGGGAAAGCTAAATTTGGAGTCAGTGACGACAGTTAATAACCTCATCAGCACCACTGTCCACCAGATCAAGACAGCCTTAAACTGCCATACCATGGCGTTCTCTACAACGGCTAACAACTGCTCTGTAGTTTCTTCTTTTCTTTCTAGTAACTCTTCGACAAGGCATAAGAGAGTAAGAAACATTAGCATTTGTGCCAAGCAAAGCACGAGTAGTTCGTTGCAGTTGCAGTACAGAAAACTCGGGGACTCTGACCTTCAAGTTTCTGAAGTTACGCTTGGAACGATGACTTTTGGGCAACAAAACACCGAGAAAGAAGCCCACGAACAATTGAGTTATGCTTATGAACATGGGATTAATATTATAGATACTGCAGAGGCATATCCAGTTCCAATGAAACAAGAGACGCAGGGAAGAACAGACATCTACATTGGTAACTGGCTCAAGTCAAAGCCCAGAGATAAGATTATTTTGGCCACAAAAGTCTGCGGTTACTCAGAGCGGTCATCTTATCTGCGCGAAAATGCCAAAGTTTTACGGGTTGATCGTTATAATATTAGAGAAAGTGTAGAGAAAAGTCTCAAGCGGCTGAACACTGACTACATAGACTTACTGCAAATTCATTGGCCAGACCGCTATGTGGCCTTATTTGGTGATTTTTCTTACGATCCTTCAAAATGGAGGGCAAGTGTGCCATTTACAGAGCAACTGAGGGCATTTCAGGAACTTATTGAAGAAGGAAAGATACGCTACATTGGTGTTTCAAATGAAACTTCATATGGAGTGATGGAATTTGTTCACGCAGCAAAAATTGAAGGATTGCCAAAGATCGTTAGTATCCAAAATAATTACAGTCTTATAAACAGATGCCGCTTTGAAGTCGATCTTGCTGAGGTTTGTCATCCAAATAACTACAATATTGGCTTGCTTGGTTATTCTCCGTTGGGTGGTGGAACTCTGAGCGGCAAATACTTGGATGCCAATTCTCAAGGTGGAGGAAAAGGAAGGCTGAGCCTCTTCCCAGGCTACATGGGTAGATACAACAAATCTATTGCTAAGGAAGCAACAGCTCATTATGTACAGTTAGCCAAAAAGTACGGCCTAACTCCAGTACAGCTTGCGCTTGGGTTTGCTCGAGACCGTCCATTTATGACGAGTTCAATAATAGGTGCAACGTCCATGGACCAACTCAGAGAAGACCTTAATGCTTTCACGATGACCGAGCGGCCATTGCCGGCAGAACTCATGGCAGACATAGAAGCTATTTTCCAGAGATACAAAGATCCAGCTATC 3324 45.61 MDYGSGGGGSGWDNDSSSDPQRKKKRYHRHTANQIQRLEAMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSALRTENDKIRCENIAIREALKNVICPSCGGPPIQDPYFDEQKLRIENAHLKEELDRVSSIAAKYIGRPISQLPPIQPSHFSSLELSMGSFASQEMGSLSLDLDLLPASSSSVPSLPYHHPIHFSDVDKSLMTEVATNAMGELLRLSQTNEPFWMKSPSDARDVLDLESYQQAFPRSNTQLKNLHSRTEASRDSGMVIMNSASLVDMLMDSTKWTELFPTIVSIARTIEVISTGMLGSHSGSLQLMYQELHLLSPLVSTRQFYVLRHCQQIEQGTWAVVDVSYNIPRENQIVSRDSQCHRFPSGCLIQDMPNGYSKVTWIEHVEIEDKGSTHWLFRDIIHNGLAFCAERWLATLQRMCERFACLMVAGSSSRDLGGVITSLEGKKSMMKLAQRMVNNFCASISTSHGHRWTTLSGMNEVGVRVTVHKSMDPGQSNGVVLSAATTIWLPVSPQTIFNFFKNDRTRSQWDVLSDGNPVQEVAHIANGSHPGNCISVLRAFNTSQNNMLILQESCIDSSGSLVVYCPVDLPAMNVAMSGEDPSSIPLLPSGFTILPDGRRDPGEGASSSSDVHSRSRGSLVTVAFQILVSSLPSGKLNLESVTTVNNLISTTVHQIKTALNCHTMAFSTTANNCSVVSSFLSSNSSTRHKRVRNISICAKQSTSSSLQLQYRKLGDSDLQVSEVTLGTMTFGQQNTEKEAHEQLSYAYEHGINIIDTAEAYPVPMKQETQGRTDIYIGNWLKSKPRDKIILATKVCGYSERSSYLRENAKVLRVDRYNIRESVEKSLKRLNTDYIDLLQIHWPDRYVALFGDFSYDPSKWRASVPFTEQLRAFQELIEEGKIRYIGVSNETSYGVMEFVHAAKIEGLPKIVSIQNNYSLINRCRFEVDLAEVCHPNNYNIGLLGYSPLGGGTLSGKYLDANSQGGGKGRLSLFPGYMGRYNKSIAKEATAHYVQLAKKYGLTPVQLALGFARDRPFMTSSIIGATSMDQLREDLNAFTMTERPLPAELMADIEAIFQRYKDPAI 1108
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19077146 19089346 + MC03g1346 Mch3g1788 684691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1788 1108 SUPERFAMILY NAD(P)-linked oxidoreductase 753 1104 IPR036812 -
Mch3g1788 1108 FunFam Homeobox-leucine zipper protein GLABRA 2 221 446 - -
Mch3g1788 1108 SMART START_1 221 447 IPR002913 GO:0008289(InterPro)
Mch3g1788 1108 Pfam Aldo/keto reductase family 768 1099 IPR023210 -
Mch3g1788 1108 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Mch3g1788 1108 ProSiteProfiles START domain profile. 212 450 IPR002913 GO:0008289(InterPro)
Mch3g1788 1108 SUPERFAMILY Bet v1-like 214 448 - -
Mch3g1788 1108 SMART HOX_1 22 85 IPR001356 GO:0003677(InterPro)
Mch3g1788 1108 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 13 706 IPR042160 -
Mch3g1788 1108 SUPERFAMILY Bet v1-like 469 701 - -
Mch3g1788 1108 FunFam NADP(H)-dependent aldo-keto reductase 753 1108 - -
Mch3g1788 1108 MobiDBLite consensus disorder prediction 1 31 - -
Mch3g1788 1108 Gene3D - 12 97 - -
Mch3g1788 1108 CDD START_ArGLABRA2_like 216 446 - -
Mch3g1788 1108 Gene3D - 235 447 IPR023393 -
Mch3g1788 1108 CDD AKR_Tas-like 765 1099 - -
Mch3g1788 1108 Gene3D - 753 1108 IPR036812 -
Mch3g1788 1108 Pfam Homeodomain 24 79 IPR001356 GO:0003677(InterPro)
Mch3g1788 1108 CDD homeodomain 24 82 IPR001356 GO:0003677(InterPro)
Mch3g1788 1108 PRINTS Aldo-keto reductase signature 869 887 IPR020471 GO:0016491(InterPro)
Mch3g1788 1108 PRINTS Aldo-keto reductase signature 917 934 IPR020471 GO:0016491(InterPro)
Mch3g1788 1108 SUPERFAMILY Homeodomain-like 8 81 IPR009057 -
Mch3g1788 1108 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677(InterPro)
Mch3g1788 1108 FunFam Homeobox-leucine zipper protein HDG1 11 97 - -
Mch3g1788 1108 Pfam START domain 222 447 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1788 Mch-Chr3:19077146 Mch8g2240 Mch-Chr8:25551823 4.74E-252 dispersed
Mch3g1788 Mch-Chr3:19077146 Mch4g0233 Mch-Chr4:1496817 7.88E-221 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43099 PF00248 Aldo_ket_red 7.50E-68 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1788 K09338 - csv:101215660 1259.59