Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1793 ATGATAGCCAATACCTCCCCATCGTCTCTTCCTTCCTCCGAACCTTTTTCTTGCTTAGAAAATGGAAACAGCAACGTTAGCAAGAGGAAGAGAAGACCCGCGGGAACCCCAGATCCGGATGCAGAGGTGGTGTCTCTGTCCCCAAAAACGCTGCTAGAATCGGATCGGTACGTGTGTGAGATCTGCAACCAGGGATTTCAGCGGGACCAGAACCTGCAGATGCACAGGAGGAGGCACAAGGTGCCGTGGAAGCTGCTCAAGAGGGAGACGCCGGTGGTGAGGAAGAGGGTTTTCGTGTGCCCGGAGCCCACGTGCTTGCACCACGACCCATGCCACGCCCTCGGGGATCTGGTTGGCATCAAGAAGCACTTCAGAAGGAAGCACAGCAACCACAAGCAATGGGTCTGTGAAAAATGCTCCAAGGGCTACGCCGTCCAATCCGATTACAAGGCCCATCTCAAAACCTGCGGCACCAGAGGCCACTCTTGCGATTGCGGCCGCGTTTTCTCAAGGGTGGAGAGCTTTATAGAGCACCAAGATGCTTGCAATATGGGGCATCTCCGGGCAGAATCCCAAAGCCTCCAAGCCGCCGCATGTTTGTCCCGAACAGCCTCCAGCCCCAGCCCCTCCAGCGATACCAACTTCAGCAGCGGCCCCAATTGGTCTGCCGCTCTCATACCGCCACCTCCCACTTTGAAGCACCCACCTCCAGCTGCCCCTACCCACGACTCCAACAACAGCATTATTATTAATAATAATAATAATAATAATAGTAATGCCTGCGCCTCACCCTTATATCACAATTTAGACCTCAAACTCTCGACTACATCATCAAACGCTGTCGACGCTTCCTCAAACAGATCATCGCCCAGTAAAGGGAATAACAACAACAATAAAGGTTCTTCAACCCAACTGCAACTTTCCATTGGTTCGTGTGACTTTAGTTGTTCTCCAGGAGAAGGGGAAGATAAGGCGGTGGCAGCGGACGTTAGAGAAGAAGCTCGGGAGCAGCTGAGGGTGGCGATGGCAGAGAAGGAGTACGCGGAGGAAGCAAGGCAGCAAGCGAAGCGTCAAATCGAAATGGCAGAGCAAGAGTTTGCGAATGCGAAGAGAATGCGGCAGCAGGCGGCGGCCGAGTTGGACAAGGCTACAGCTCTTAAACAAGCAGCAATCAAACAGATCAACTCAACCATTCTTGAGATCACTTGTCAAGCTTGCCGGAAGCAATTTCAAGCCACCGCAACGGCGGATCATCATGACAACTCCTTGGCATTCAGTTATGTGTCCTCCGTCATAACAACCGAAGGTGAAGTAGACAAACATCATTCAACCCTTATACCTAAGCCCACCAATAATTAA 1359 52.02 MIANTSPSSLPSSEPFSCLENGNSNVSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLRAESQSLQAAACLSRTASSPSPSSDTNFSSGPNWSAALIPPPPTLKHPPPAAPTHDSNNSIIINNNNNNNSNACASPLYHNLDLKLSTTSSNAVDASSNRSSPSKGNNNNNKGSSTQLQLSIGSCDFSCSPGEGEDKAVAADVREEAREQLRVAMAEKEYAEEARQQAKRQIEMAEQEFANAKRMRQQAAAELDKATALKQAAIKQINSTILEITCQACRKQFQATATADHHDNSLAFSYVSSVITTEGEVDKHHSTLIPKPTNN 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19137507 19140417 + MC03g1351 Mch3g1793 684696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1793 452 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 402 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch3g1793 452 Gene3D Classic Zinc Finger 119 197 - -
Mch3g1793 452 MobiDBLite consensus disorder prediction 203 221 - -
Mch3g1793 452 Gene3D Classic Zinc Finger 35 97 - -
Mch3g1793 452 SMART c2h2final6 98 128 IPR013087 -
Mch3g1793 452 SMART c2h2final6 134 161 IPR013087 -
Mch3g1793 452 SMART c2h2final6 57 79 IPR013087 -
Mch3g1793 452 FunFam protein indeterminate-domain 12-like 36 104 - -
Mch3g1793 452 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 133 157 - -
Mch3g1793 452 MobiDBLite consensus disorder prediction 1 44 - -
Mch3g1793 452 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 94 128 - -
Mch3g1793 452 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 161 183 - -
Mch3g1793 452 MobiDBLite consensus disorder prediction 1 24 - -
Mch3g1793 452 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Mch3g1793 452 MobiDBLite consensus disorder prediction 278 304 - -
Mch3g1793 452 CDD ATP-synt_Fo_b 322 408 - -
Mch3g1793 452 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Mch3g1793 452 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Mch3g1793 452 MobiDBLite consensus disorder prediction 203 251 - -
Mch3g1793 452 MobiDBLite consensus disorder prediction 223 237 - -
Mch3g1793 452 Coils Coil 331 393 - -
Mch3g1793 452 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1565 Mch-Chr3:17673568 Mch3g1793 Mch-Chr3:19137507 6.83E-114 dispersed
Mch3g1793 Mch-Chr3:19137507 Mch4g1480 Mch-Chr4:18319755 3.56E-112 dispersed
Mch3g1793 Mch-Chr3:19137507 Mch8g0756 Mch-Chr8:5354386 9.23E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43101 PF00096 zf-C2H2 0.0043 CL0361 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1793 K25871 - csv:101209426 626.32