Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch4g0013 | ATGTTCCATCCTAAGAAAGCTTCGAGTATGAATTCTCACGAGAGATCAGGTGCTGCAGGGATGTGCGTCCAAGGCGACTCCGGGCTGGTTCTCACCACCGACCCCAAACCCCGCCTCCGCTGGACTGTTGAGCTTCATGAACGCTTTGTCGATGCTGTCACTCAGCTGGGAGGCCCTGATAAGGCCACGCCTAAGACTATCATGAGAGTTATGGGTGTAAAGGGTCTTACTCTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGACTGGGAAAGCAGCCTCACAAGGAATTCAATGATCATTCGGTTAAGGATGGTATGAGAGGTTTAGAACTTCACCGAAACACGGCTTCTTCCTCCAACATCATCAACCGAAGCATGAACGATGGTAACTCACACATGGTTGATGCGATTAGGATGCAAATGGAAGTGCAGAGAAGATTGCATGAGCAATTAGAGGTACAAAGACACCTGCAGTTGCGGATCGAGGCTCAAGGGAAGTATATGCAGAGCATATTAGAAAAGGCCTGTCAAACCCTGGCGGGTGAGAATTCGGGGGCTGCCACCTACAAGCCAATGCCAATGTCAATGCCCATCCCAAATAACAATAACGATTTTGGTTCCCCTCTGGGATTTCCAGGTTGTTTTCAAGATCTGAACCTTTACGGAGGGGAGCAGGTGGAGCTGGATGGACTCATGCCTCATCACAGCAACAACGACAGCTTACTGTGCTTGGGAAAGAATAAGAAGCCCAGCAGGGCGCCAAACTGGTCGGAGGATTTCCGGCTCCAGGACATAGGAATGGCGCCGCCCTCGTCCCCGTGCCAACAAGATCATCATCAAGATTTCAAAATTGGTGCAGCGCTGGTTGTGGAAAGATCAGATGAGTTGGAGGAAATGGAAATGTACGGGGCCGAGGCCAATGCCAATGCCAAGGCCGCATGCGCCGCAGTAGCAGATGACAAGAAATATGATCATATGAATGCAAAGCTTCAGAGGCCGTCCCCCAGAAGGGCCCCACTTTCCACGGATAGGACCAACAACTACCCTCTAATTACCACCGCTCCACCATTTGGCTGA | 1080 | 50.56 | MFHPKKASSMNSHERSGAAGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSVKDGMRGLELHRNTASSSNIINRSMNDGNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENSGAATYKPMPMSMPIPNNNNDFGSPLGFPGCFQDLNLYGGEQVELDGLMPHHSNNDSLLCLGKNKKPSRAPNWSEDFRLQDIGMAPPSSPCQQDHHQDFKIGAALVVERSDELEEMEMYGAEANANAKAACAAVADDKKYDHMNAKLQRPSPRRAPLSTDRTNNYPLITTAPPFG | 359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 113849 | 116434 | - | MC04g0011 | Mch4g0013 | 684725 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch4g0013 | 359 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Mch4g0013 | 359 | Gene3D | - | 35 | 93 | - | - | |
| Mch4g0013 | 359 | FunFam | Myb family transcription factor | 35 | 93 | - | - | |
| Mch4g0013 | 359 | MobiDBLite | consensus disorder prediction | 339 | 353 | - | - | |
| Mch4g0013 | 359 | SUPERFAMILY | Homeodomain-like | 35 | 91 | IPR009057 | - | |
| Mch4g0013 | 359 | MobiDBLite | consensus disorder prediction | 327 | 359 | - | - | |
| Mch4g0013 | 359 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 33 | 93 | IPR017930 | - | |
| Mch4g0013 | 359 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 36 | 91 | IPR006447 | GO:0003677(InterPro) | |
| Mch4g0013 | 359 | Pfam | Myb-like DNA-binding domain | 38 | 88 | IPR001005 | - | |
| Mch4g0013 | 359 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 5 | 211 | IPR046955 | GO:0003700(InterPro) | |
| Mch4g0013 | 359 | Pfam | MYB-CC type transfactor, LHEQLE motif | 134 | 179 | IPR025756 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch4g0013 | Mch-Chr4:113849 | Mch5g0198 | Mch-Chr5:1289376 | 5.48E-51 | dispersed | |
| Mch4g0013 | Mch-Chr4:113849 | Mch1g1933 | Mch-Chr1:19178333 | 2.67E-14 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 43106 | PF00249 | Myb_DNA-binding | 1.90E-06 | CL0123 | Mch | TF |
Pathway information