Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0020 ATGGTGGCTACCAAGGCGAAAGACTGCCTGGTCGCGGGTCTGCCTACTGAGGATAATCGCATCCGTAAGAGTGTAGCGATGGGAAGTTTTAAGGTCTATACGGAGAAAGATAAGATTAAAGTTGATTCCAGTTGCAAGAAACCTGTAACAATAAAGAAGGGGTCTTCAGCAGATTGTGCGATTCAATCAAAGGGAGGCCTGCAACGCTCATCGAAGAATGCAGACAAAATTGAAGTCTCTGGGCCCAAAAGCATGGTAAGAAGAGTATTGGCAGATGTGAGTAACGTCCGAGTCAACTCTTCGAGGAAAACAGTGCAAGATGGCTCCAAGCATAAGGCTACAATTGGGACTAGAGCTAGCAGTACAGTCCGTGTCCCACTTAGGAAATCATTGCCATTGGTATTGAAGAATTCAGGCGAAGCTGTTCGTGACTTACATGCTTCAAGAAAAGGGTGTGTCGAAGATTCAAAAGGGTTTTCAGTCTATGAAACAAACAAAATAGATGGAAGCTGTGAATCCAGTACTTTAAATGCCAGGAGAACTAGGACGATGTCTCTTGTTGAAACAAGGAGATCTTTACCAGTGCTAAAGAGGATGAACCAGGCAACTGCTTTGAACCCGAAGGAAGTTACTGAGAAGCTAGAAAATGCCAAGGGATTTCAAGCATGTATGACTAAATCTGGCAAGAATGCAGTAACCCAAGCAAAAAATACAAGAATTCAGCTATGGAAAAACCGAGTGAGCGATGGCCACGTTATAATGGGTCAAGCCAAGGTGGACACAAATGCAACGTCGAAGAAGTCTAGTAAGCCCATTGTAAGGACCACGAAGAAGGCTTCTGGTACTCAAGAGGCATCAAAACCCAAATATGCAACAGTTGTAATCAAATCAATTTCTAATACTGCATCATCATCCGCGATTGTGAAACCGTCGACATCTCTTTGTGAGGATATAACTAATGTGTCCATTCAAGAGAAGGATGCATCTGAACCTACTTGTAATCCAAGTACGAGTACGGATTTCTCTTTCAGGAAAAAAGTTGGTCGTAGGAGATCGTATACATCCTTGTTGGTTGTTGGAGCGAAGTTGCTGGACAAATGTGCTGTAGATACAGGGCTAGCTAACCTACCCAGTATTGACAATGACTTCAACCAAATGGAGGTTGCTGAATACGTTGAGGAGATATATCAGTATTATTGGGTTATAGAGGCACAAAGTTCGTCTCTTTCAAATTACTTATCAGTACAAACAGAAATTACCCCCCTTATGCGAGGCATTTTGATCAACTGGTTGATTGAAGTACACTTCAAATTTGACTTGATGCCTGAAACACTATTTCTCTCTGTTACATTGTTTGACCGGTATCTCTCCCAAGTCATAATAAAAAAGAATGAAATGCAGTTGCTTGGTCTTACTGCACTGTTGTTGGCATCGAAATATGAAGATTTTTGGCATCCTAGGGTTAAGGATCTAATTAGCATTTCAGCTGAGTCTTACTCAAGACAGCAAATGCTACAAATGGAAGCACTCATTCTTAAGAAGTTGAAGTTTCGCCTGAACATGCCTACTCCATATGTTTTCATGTTAAGGTTTCTCAAGGCTGCTCAGTCTAATACTCAGCTTGAACACTTGTCATTTTACTTGATCGAACTGACCTTGGTTGAATACGAAGCTCTTAGTTTTAAGCCGTCGTTGTTGTGTGCATCGGCGATATATGTTGCACGGTGTATGCTGCGGATAAGTCCATATTGGACTCCACTACTAAACAAACATGCACGCTACGAAGTGTCCCAAATAAGGGAATGCGCTGAGATGATCTTGAAATTTCACCAATCTGCTCAACTGGGACAGCTGAAAGTCACGTATGAGAAGTACATGAAATCTGATTTTAGTGCTGTTGCAGCTGTGAAACCACTGGAGAAGCTTCCT 1929 42.04 MVATKAKDCLVAGLPTEDNRIRKSVAMGSFKVYTEKDKIKVDSSCKKPVTIKKGSSADCAIQSKGGLQRSSKNADKIEVSGPKSMVRRVLADVSNVRVNSSRKTVQDGSKHKATIGTRASSTVRVPLRKSLPLVLKNSGEAVRDLHASRKGCVEDSKGFSVYETNKIDGSCESSTLNARRTRTMSLVETRRSLPVLKRMNQATALNPKEVTEKLENAKGFQACMTKSGKNAVTQAKNTRIQLWKNRVSDGHVIMGQAKVDTNATSKKSSKPIVRTTKKASGTQEASKPKYATVVIKSISNTASSSAIVKPSTSLCEDITNVSIQEKDASEPTCNPSTSTDFSFRKKVGRRRSYTSLLVVGAKLLDKCAVDTGLANLPSIDNDFNQMEVAEYVEEIYQYYWVIEAQSSSLSNYLSVQTEITPLMRGILINWLIEVHFKFDLMPETLFLSVTLFDRYLSQVIIKKNEMQLLGLTALLLASKYEDFWHPRVKDLISISAESYSRQQMLQMEALILKKLKFRLNMPTPYVFMLRFLKAAQSNTQLEHLSFYLIELTLVEYEALSFKPSLLCASAIYVARCMLRISPYWTPLLNKHARYEVSQIRECAEMILKFHQSAQLGQLKVTYEKYMKSDFSAVAAVKPLEKLP 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 140663 146819 + MC04g0018 Mch4g0020 684732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0020 643 Gene3D - 514 642 - -
Mch4g0020 643 Pfam Cyclin, C-terminal domain 522 638 IPR004367 -
Mch4g0020 643 SUPERFAMILY Cyclin-like 385 520 IPR036915 -
Mch4g0020 643 ProSitePatterns Cyclins signature. 424 455 IPR048258 -
Mch4g0020 643 Pfam Cyclin, N-terminal domain 394 520 IPR006671 -
Mch4g0020 643 PANTHER CYCLINS 378 626 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Mch4g0020 643 FunFam putative cyclin-B3-1 isoform X3 518 643 - -
Mch4g0020 643 FunFam Cyclin N-terminal domain containing 2 409 517 - -
Mch4g0020 643 SMART Cyclin_C_2 522 639 IPR004367 -
Mch4g0020 643 SMART cyclin_7 526 608 IPR013763 -
Mch4g0020 643 SMART cyclin_7 429 513 IPR013763 -
Mch4g0020 643 Gene3D - 408 513 - -
Mch4g0020 643 SUPERFAMILY Cyclin-like 521 640 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1647 Mch-Chr1:17393279 Mch4g0020 Mch-Chr4:140663 2.68E-66 dispersed
Mch2g0203 Mch-Chr2:1533033 Mch4g0020 Mch-Chr4:140663 2.52E-69 dispersed
Mch4g0020 Mch-Chr4:140663 Mch8g0407 Mch-Chr8:2899062 5.24E-43 dispersed
Mch4g0020 Mch-Chr4:140663 Mch11g0059 Mch-Chr11:387350 3.30E-66 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0020 K21777 - csv:101213908 913.679