Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0045 ATGGCGACGGAGGTGAATATGGGCGGGAGCTGCAAAAAGAGTGCCCCATCCCCATGCGCCGCGTGCAAGCTTCTGCGGCGGCGGTGCTCTCAGGACTGCGTATTTGGCCCTTATTTCCCAGCCGACCAGCCCCACAAATTCTCCTGCGTCCATAAAGTCTTTGGAGCTAGTAATGTCAGCAAGTTGTTGCAGGAAGTGGCAGAGGAGCAGCGGAGCGACGCGGTGAGTTCGATTGTGTACGAAGCGAAGGCGAGAATAAAAGACCCGGTTTACGGGTGCGTGGGAACAATATCGAGCCTACAGCGGCAAGTGGAGGCACTCCAAGAGCAACTGGCCATCACCCAGGCCCAGCTGCTCCACTTGAAAATGGCCCAATGCCCCACT 384 57.29 MATEVNMGGSCKKSAPSPCAACKLLRRRCSQDCVFGPYFPADQPHKFSCVHKVFGASNVSKLLQEVAEEQRSDAVSSIVYEAKARIKDPVYGCVGTISSLQRQVEALQEQLAITQAQLLHLKMAQCPT 128
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 317030 318936 - MC04g0039 Mch4g0045 684757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0045 128 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 17 124 - -
Mch4g0045 128 Coils Coil 97 124 - -
Mch4g0045 128 ProSiteProfiles LOB domain profile. 17 118 IPR004883 -
Mch4g0045 128 Pfam Lateral organ boundaries (LOB) domain 18 115 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0516 Mch-Chr2:3674653 Mch4g0045 Mch-Chr4:317030 5.85E-23 dispersed
Mch2g0815 Mch-Chr2:5603779 Mch4g0045 Mch-Chr4:317030 4.11E-50 dispersed
Mch4g0045 Mch-Chr4:317030 Mch9g1433 Mch-Chr9:16724604 4.19E-52 dispersed
Mch2g0739 Mch-Chr2:5062145 Mch4g0045 Mch-Chr4:317030 7.43E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43108 PF03195 LOB 6.40E-43 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0045 - - - 0.0