Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0052 ATGTCATCCGGAAGTTCTTTGAATACGAAATTGTCAAAGAAAACTCCCTTCCTTGGTTTGTCCTTATGGGTTTTGATTTGCTTATGCGTTGCTGCATTTATTGTTTTGATTCTCGGTATCTTATCCGTATGGGTGATGTCTCGAAGAAAAACAAGGAGATCCCCAGAAAACTTTTCTGTTTCTCAAATACCAAATGTCTCAAAGGACATCAAGGTGGACAGAATAGCGACTCAATCTGCCCACCACAATCATCTTGAGAATCTTTATCTTTCCATTCATGATAAATCTAGTGAGAAAAACTCAGAGAAGATGATTGGCCATTTGGGTATGAGCAAATCAAGCGACCCTGATAATATAAGTCAATGCAGCTCCAATTATCATCACGAAAGGGTTTTCAGCTCACATTCAGGAGAAGAAGGAAGCTCTGGGACTGTTAGAAAGCAGTCTTCCATAACGTATGGAGGGTATGGAGGACTTGTGACTGCCTCTCCTCTTGTTGGCTTGCCCGAAATTTCGCATCTTGGTTGGGGTCATTGGTTTACACTCAGAGATCTGGAATTTGCGACAAATCGATTTGCCCCAGACAATGTGCTTGGTGAAGGAGGTTACGGGGTTGTCTATAAAGGTAGACTGATAAATGGAACTGAGGTCGCTGTGAAGAAACTTCTCAATAATCTGGGACAAGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCCATTGGCCATGTAAGACACAAGAATCTTGTACGGCTCCTGGGCTATTGCATAGAAGGAGTTCATAGGATGCTGGTTTATGAATATGTGAACAATGGCAACTTAGAACAATGGTTACATGGGGCTATGCGCCAACATGGAACCCTTACTTGGGAGGCGAGAATGAAGGTGCTTCTTGGCACCGCCAAGGCGCTAGCATATTTACATGAGGCAATTGAACCAAAGGTTGTCCATAGAGACATAAAATCAAGCAACATCCTAATCGATGACGAGTTTAATGCAAAGGTTTCAGATTTTGGATTGGCCAAACTTTTGGATGCAGGAGAGAGTCACATCACGACTAGAGTGATGGGAACATTTGGCTACGTGGCACCCGAATATGCCAACACTGGATTGTTAAATGAGAAAAGTGACATTTACAGCTTTGGCGTTCTTCTTCTAGAAGCAATTACCGGAAGAGATCCTGTCGACTATGGCCGTCCTGCTAACGAGGTTAATCTTGTTGAGTGGTTAAAAGTGATGGTAGGCACAAGGAGAGCCGAGGAAGTTATAGACCCAAATCTTGAAACTAAACCCGCTACACGTGCTTTGAAACGTGCCCTTCTGATTGCACTTAGGTGTGTGGATCCTGAGTCAGATAAGAGACCAAAAATGACTCAAGTTGTTAGGATGCTTGAAGCTGATGACTACCCATCACGTGAGGATCGGAGGAGCCAAAAGAGCTGTACAACAAGCACAGAGATTGAATCCACGAAAGAGATCTCCGGTCAAGCCGAGGTCGGAAGTAAACCAGGGGAATCGCAAAGCAGAGCTGCAAATGCATGA 1539 43.79 MSSGSSLNTKLSKKTPFLGLSLWVLICLCVAAFIVLILGILSVWVMSRRKTRRSPENFSVSQIPNVSKDIKVDRIATQSAHHNHLENLYLSIHDKSSEKNSEKMIGHLGMSKSSDPDNISQCSSNYHHERVFSSHSGEEGSSGTVRKQSSITYGGYGGLVTASPLVGLPEISHLGWGHWFTLRDLEFATNRFAPDNVLGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDAGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKVMVGTRRAEEVIDPNLETKPATRALKRALLIALRCVDPESDKRPKMTQVVRMLEADDYPSREDRRSQKSCTTSTEIESTKEISGQAEVGSKPGESQSRAANA 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 379044 383989 + MC04g0046 Mch4g0052 684764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0052 512 PANTHER OS01G0323000 PROTEIN 6 489 IPR052232 -
Mch4g0052 512 FunFam Putative receptor-like serine/threonine-protein kinase 268 478 - -
Mch4g0052 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 314 326 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g0052 512 Gene3D Phosphorylase Kinase; domain 1 174 267 - -
Mch4g0052 512 MobiDBLite consensus disorder prediction 481 512 - -
Mch4g0052 512 SMART serkin_6 192 463 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g0052 512 Gene3D Transferase(Phosphotransferase) domain 1 268 481 - -
Mch4g0052 512 ProSitePatterns Protein kinases ATP-binding region signature. 198 221 IPR017441 GO:0005524(InterPro)
Mch4g0052 512 ProSiteProfiles Protein kinase domain profile. 192 456 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g0052 512 MobiDBLite consensus disorder prediction 464 512 - -
Mch4g0052 512 Pfam Protein kinase domain 196 461 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g0052 512 Coils Coil 212 232 - -
Mch4g0052 512 MobiDBLite consensus disorder prediction 464 480 - -
Mch4g0052 512 SUPERFAMILY Protein kinase-like (PK-like) 176 469 IPR011009 -
Mch4g0052 512 CDD STKc_IRAK 198 464 - -
Mch4g0052 512 FunFam Putative receptor-like protein kinase 174 267 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0052 Mch-Chr4:379044 Mch7g1272 Mch-Chr7:16185821 4.27E-181 dispersed
Mch6g1491 Mch-Chr6:14394492 Mch4g0052 Mch-Chr4:379044 3.38E-52 transposed
Mch2g0723 Mch-Chr2:4932723 Mch4g0052 Mch-Chr4:379044 5.67E-277 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77300 PF00069 Pkinase 4.80E-48 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0052 - - - 0.0