Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0053 ATGTCAAATGATGAAGGCAAAAACCTGTACCAGCAGTATGATCCATTCCACTACAACCAGCTGGATATGAACCGTTCGATCTTCCATCAACAGGCGTTGGATCCTGCTTTCATGAGCTTCACTAACTTCTTCGACACGTCGTTGGACTACAACAGCCTTTCGAGGGCGTTCGACGTGTCGTGCTCTTCATCCGAGGTGATTTCTCCTGTGGACGACAAGTCGAAGAGCGGTGGAGTAGGAGGGAAGAGTTTAATAAAGCAGTCGTCGACGACGACGCCTAATTCTTCAGTGTCGTCTTCGTCAAATGAGGCAGCAGCGGCTGAAGAAGATTCATTCAAGAGCAACAAAGAGGACACAAAAGGGAGCGAGAATAATAAAGATGAGGAAAAGTCTAAGAAGCAGAAGATGATGTTGAAAAAGAAAGAGAAACGACAAAGGGAGCCCCGGTTTGCTTTCTTGACTAAGAGCGAGATTGATCACCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAAGCAGTAAAAAATAGCCCTTACCCCAGAAGTTACTACAGATGCACCAGTCAAAAGTGTCTAGTGAAAAAACGAGTTGAAAGATCGTACCAAGATCCATCTGTGGTGATAACTACATACGAAGGCCAACACAACCACCATTGCCCAGCTACACTGCGAGGCCATTCTGTAGGAATGATGCCATCTCCGTTCTACGCCTCGGCATCGGCATCGGCATTGGCATCGGCATCGGCAGCGTCCTCCGGGCCCACGCTCCCCCAAGAACTCTTCTCTCATTTGCTTCCGATCACCAGCTGCCAAACCGACCCGGTCGGCTCGATGATGTACCAAAATCTAAATCTCCAGCAACACCTTCAGAACATGCCAGACCATTATGGCTTGTTGCAAGATTTGTTTACTGATCATCAGAAATAG 930 47.2 MSNDEGKNLYQQYDPFHYNQLDMNRSIFHQQALDPAFMSFTNFFDTSLDYNSLSRAFDVSCSSSEVISPVDDKSKSGGVGGKSLIKQSSTTTPNSSVSSSSNEAAAAEEDSFKSNKEDTKGSENNKDEEKSKKQKMMLKKKEKRQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCLVKKRVERSYQDPSVVITTYEGQHNHHCPATLRGHSVGMMPSPFYASASASALASASAASSGPTLPQELFSHLLPITSCQTDPVGSMMYQNLNLQQHLQNMPDHYGLLQDLFTDHQK 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 387618 390125 - MC04g0047 Mch4g0053 684765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0053 309 ProSiteProfiles WRKY domain profile. 156 221 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0053 309 FunFam WRKY transcription factor 57 147 221 - -
Mch4g0053 309 SUPERFAMILY WRKY DNA-binding domain 154 221 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0053 309 MobiDBLite consensus disorder prediction 109 148 - -
Mch4g0053 309 Gene3D WRKY domain 146 222 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0053 309 Pfam WRKY DNA -binding domain 162 219 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0053 309 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 90 228 IPR044810 GO:0003700(InterPro)
Mch4g0053 309 SMART WRKY_cls 161 220 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0053 309 MobiDBLite consensus disorder prediction 67 148 - -
Mch4g0053 309 Coils Coil 126 146 - -
Mch4g0053 309 MobiDBLite consensus disorder prediction 81 108 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1999 Mch-Chr1:19577315 Mch4g0053 Mch-Chr4:387618 5.49E-46 dispersed
Mch4g0053 Mch-Chr4:387618 Mch8g2124 Mch-Chr8:24315307 5.07E-40 dispersed
Mch1g0707 Mch-Chr1:11017137 Mch4g0053 Mch-Chr4:387618 5.98E-21 transposed
Mch2g0722 Mch-Chr2:4928813 Mch4g0053 Mch-Chr4:387618 8.19E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43110 PF03106 WRKY 2.70E-25 CL0274 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0053 - - - 0.0