Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0061 ATGGTAGCTGGTGGTGTCTGTTGTTCTGGTTTGGTGCTTGAGTTTTTGGTTCAGGTTTTGGGATTGCAGGTGGGGAAGTGTATGAGGGATTTGGTTTGGAGTTCTACGGAATTGGATTTTTTTTCTGAATATGGTGACGCCAACAGATTCAAAATCCAGGAAGTTATTGGAAAGGGGAGTTATGGGGTGGTTTGTTCAGCAGTTGACACTCTCACAAATGAAAAAGTGGCAATAAAGAAGATACATGATATTTTTGAACATGTATCTGATGCTGCCCGTATTCTTCGTGAGATAAAGCTGCTCAGACTTCTACGTCATCCCGATATTGTCGAAATCAAACACATTATGTTGCCACCTTCTCGTAGAGGCTTCAAAGATATCTTTGTTGTGTTTGAGTTGATGGAATCAGATTTGCATCAAGTCATCAAGGCCAATGATGATTTAACAAAAGAGCACTATCAATTTTTTCTGTACCAGTTGCTCCGTGCGTTGAAATATATTCACACAGCAAATGTCTACCATCGGGATTTAAAACCAAAGAATATATTGGCAAATGCAAATTGCAAACTCAAAATTTGTGATTTCGGATTGGCTAGAGTTGCTTTCAGTGACACGCCGACAACAATATTTTGGACGGACTATGTTGCTACTAGATGGTATAGGGCACCCGAGCTCTGTGGTTCTTTCTTCTCTAAGTATACTCCTGCCATTGACATTTGGAGTATCGGCTGCATATTTGCTGAAGTACTAACCAGAAAACCACTTTTTCCTGGTAAAAATGTTGTTCATCAGCTCGACTTGATGACAGATCTCCTTGGAACGCCTTCCTTAGACACCATTTCTCGAGTAAGAAATGAAAAGGCCAGGAGGTACTTAACTAGTATGAGGAAGAAGCAGCCAATACCCTTTTCACAGAAGTTTCCAAATGCAGATCCTCTAGCCCTGCAATTGCTAGCACGATTGCTTGCATTTGATCCGAAGGATCGACCTACTGCCCAAGAGGCATTGGCAGATCCTTACTTTAAGGGGCTGGCAAAAGTTGAGAGAGAACCTTCTTGCCAGCAAATCTCAAAGGTGGAATTTGAATTTGAGAGGAGAAAGGTCACAAAGGACGACATTCGCGAGCTGATATTCCGTGAGATACTAGAATACCATCCTCAACTGCTGAAAGACTACTTGAACGGAACTGAGAGATCAAATTTTCTCTATCCAAGTGCACTCGATCAGTTCAAAAAACAATTTGCTCATCTCGAAGATAATGGAGGGAAAAGTGGACCAGTTTATCCTCTAGAAAGAAAGCACGCTTCTCTTCCCAGGTCTTCTGTACAGTCAAATACTATTCCTCCAAAAGCAACATCAAATATTGTTTCTTTTAGAGACCGATATGCGCCAGCAGGGTCGTTCAACAACCAGCATTACAGAGATCCAGCAGCACAGAGGATTGCTGCTACCCAAGTCAAGCCTGGAAGAATTGCAGGCCCGGTCATGCCGTATGACAATGGAAGTGTCGTTAAAGATGCCTACGACCCGAGAATGTTAATTAGAAGTGCTCTCCCTTCTCACGCTATCCATCCAACATATTATTACCGCCAATCTTGCAGCCAAAATGAAGAAAGACCAGCAACAGGAACCGAGCAAGATACTTCCTTGCAATGCAAACAGGCCCCTCAATGTGGAATGGCAGCTAAACTAGCAGCAGATACAGCAGCTACTGGTGCTTTCTCAAATCCTTTTTTTATGGCGCGTGTAGGGGTGCACAAGTCGGAAAACAATGACTGTGCTGCACGTTTGCAGGTAAACGCTCAATATGATCCTGGAGCCATTGCTGCCGCAGCTGCCACTGCCCACAGAAACGCTGGCGCAGTCGAGTATGGCACGACAAGAATG 1887 43.56 MVAGGVCCSGLVLEFLVQVLGLQVGKCMRDLVWSSTELDFFSEYGDANRFKIQEVIGKGSYGVVCSAVDTLTNEKVAIKKIHDIFEHVSDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRGFKDIFVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTRKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNEKARRYLTSMRKKQPIPFSQKFPNADPLALQLLARLLAFDPKDRPTAQEALADPYFKGLAKVEREPSCQQISKVEFEFERRKVTKDDIRELIFREILEYHPQLLKDYLNGTERSNFLYPSALDQFKKQFAHLEDNGGKSGPVYPLERKHASLPRSSVQSNTIPPKATSNIVSFRDRYAPAGSFNNQHYRDPAAQRIAATQVKPGRIAGPVMPYDNGSVVKDAYDPRMLIRSALPSHAIHPTYYYRQSCSQNEERPATGTEQDTSLQCKQAPQCGMAAKLAADTAATGAFSNPFFMARVGVHKSENNDCAARLQVNAQYDPGAIAAAAATAHRNAGAVEYGTTRM 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 437982 441965 + MC04g0055 Mch4g0061 684773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0061 629 ProSitePatterns MAP kinase signature. 85 188 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g0061 629 CDD STKc_TDY_MAPK 49 386 - -
Mch4g0061 629 SUPERFAMILY Protein kinase-like (PK-like) 47 345 IPR011009 -
Mch4g0061 629 ProSitePatterns Protein kinases ATP-binding region signature. 56 80 IPR017441 GO:0005524(InterPro)
Mch4g0061 629 ProSiteProfiles Protein kinase domain profile. 50 341 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g0061 629 Gene3D Phosphorylase Kinase; domain 1 65 387 - -
Mch4g0061 629 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 48 382 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Mch4g0061 629 Pfam Protein kinase domain 51 341 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g0061 629 FunFam Mitogen-activated protein kinase 41 143 - -
Mch4g0061 629 SMART serkin_6 50 341 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g0061 629 FunFam Mitogen-activated protein kinase 136 364 - -
Mch4g0061 629 Gene3D Transferase(Phosphotransferase) domain 1 136 364 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0061 Mch-Chr4:437982 Mch7g1108 Mch-Chr7:15054923 1.34E-250 dispersed
Mch10g1025 Mch-Chr10:7448586 Mch4g0061 Mch-Chr4:437982 3.82E-252 wgd
Mch2g0720 Mch-Chr2:4907398 Mch4g0061 Mch-Chr4:437982 5.78E-303 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77301 PF00069 Pkinase 5.60E-66 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0061 - - - 0.0