Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch4g0066 | CTGTTGCCACTGTTCTCCATTTTAGCTGCAATACTAATTATGTTCATTTTTCTCTTTTCAAAACCGAAAAGAAGCAGTAACGGAAGCAAGAAGCTACCACCTGGGCAAATGGGTGTTCCCTGGATTGGAGAAACAATGGATTTTTACAGAGCCCAACGGAACAACAGATTGTTCGAGGATTTTGTTGGACCTCGAGTGGCTAAATATGGCAAAATGTTCAAAACAAGCTTGATGGGGTCGCCAACAGTGATCGTAAATGGAGCTGAAGCCAACAGATTCTTCTTGTCCAATGAGTTCAAGTTGGTGGTAAGCTCGTGGCCGTCGGCCTCAGTTCAGTTGATGGGCAAAGAATGCATCATGCAGAAGCAAGGTGAAACACACCGCTGCCTACGTGGGCTTATTGGCGCAAGCCTTGCAAGTTCTTGTCTCGAGGCTATGATGCCTAAACTGTGCACTACGATCCAGTTTCATCTCGCCACCACATGGCTTGGCCATGACACAATTGCTCTGTTCCACTCCGCAAAAGTCTTGACATTTACAATAGTGTTCGAGTGTTTGTTGGGTATCAAAGTAGAGCCAGATGTGTTGACGACGTTCGAGAGAGTTTTGGAAGGAGTTTTTGCACCACCAATCAGATTTCCAGGCTCAAGATTTTTGAGAGCCAAGAAAGCAAGGTTAGAGATAGAGAAAATGCTGAGGAAAGTGGTGAGAGAGAAGAGGAGGAAAATTGAAGGAAAGCTAGAAGAAGAAGAAGAGGGTGGATCATTGCTTTCAAGGATGGTGATGGCGATGATAAGGGGGGAGATTAGTGAAGTGGAAGTCATAGACAACGTGGTTTTGCTTGTTTTTGCAGCCCACGATACAACCTCGTTTGCCATTGCCATGGCTTTCAAAATGTTGGCTCACCATACAGACTGCTACACACTTCTTCTTCGAGAACACGATGACATACTGAGAAGTAAGGGAGAAGACCAGAATTTGACGATGGAAGATATAAAGAAGATGAAGTATACTTGGCAGGTAGCTCGTGAGACCATGCGGCTGTTTCCTCCTATATTTGGTTCTTTCAGGAAAGCGATTTCAGACATTGAATACGAAGGATTCTTCATTCCAAAAGGATGGAAGGTCTTGTGGACGACGTATGGAACGCATTACGAGGAAGAGTATTTTGAAGATCCATTGAGTTTCAAGCCAAGCAGATTCGAGGAACCTGTTTCCCAGTATGTATATGTCCCATTTGGAGGAGGGCCAAGAGCTTGTGCGGGCTACCAGCTAGCCAAATTGAACATCCTCATCTTTATACACTTTGTTGTGACTCGTTATAATTGGAGTTTAATCCATCCGGACGAACCAATCATAATGGATCCTCTCCCTTTCCCTTCTCATGGAATGCCAATCAAGATATCTCCAAAATCAGAAGTTTGTACCAATATACAGCAAATGTAG | 1446 | 44.12 | LLPLFSILAAILIMFIFLFSKPKRSSNGSKKLPPGQMGVPWIGETMDFYRAQRNNRLFEDFVGPRVAKYGKMFKTSLMGSPTVIVNGAEANRFFLSNEFKLVVSSWPSASVQLMGKECIMQKQGETHRCLRGLIGASLASSCLEAMMPKLCTTIQFHLATTWLGHDTIALFHSAKVLTFTIVFECLLGIKVEPDVLTTFERVLEGVFAPPIRFPGSRFLRAKKARLEIEKMLRKVVREKRRKIEGKLEEEEEGGSLLSRMVMAMIRGEISEVEVIDNVVLLVFAAHDTTSFAIAMAFKMLAHHTDCYTLLLREHDDILRSKGEDQNLTMEDIKKMKYTWQVARETMRLFPPIFGSFRKAISDIEYEGFFIPKGWKVLWTTYGTHYEEEYFEDPLSFKPSRFEEPVSQYVYVPFGGGPRACAGYQLAKLNILIFIHFVVTRYNWSLIHPDEPIIMDPLPFPSHGMPIKISPKSEVCTNIQQM | 481 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 460172 | 462110 | - | MC04g0060 | Mch4g0066 | 684778 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch4g0066 | 481 | SUPERFAMILY | Cytochrome P450 | 29 | 470 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g0066 | 481 | Pfam | Cytochrome P450 | 33 | 458 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g0066 | 481 | CDD | CYP90-like | 65 | 470 | - | - | |
| Mch4g0066 | 481 | Gene3D | Cytochrome P450 | 22 | 471 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g0066 | 481 | Coils | Coil | 221 | 241 | - | - | |
| Mch4g0066 | 481 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 413 | 422 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Mch4g0066 | 481 | PRINTS | E-class P450 group I signature | 66 | 85 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g0066 | 481 | PRINTS | E-class P450 group I signature | 379 | 403 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g0066 | 481 | PRINTS | E-class P450 group I signature | 273 | 290 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g0066 | 481 | PRINTS | E-class P450 group I signature | 420 | 443 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g0066 | 481 | PRINTS | E-class P450 group I signature | 410 | 420 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g0066 | 481 | PRINTS | P450 superfamily signature | 420 | 431 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g0066 | 481 | PRINTS | P450 superfamily signature | 411 | 420 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g0066 | 481 | PRINTS | P450 superfamily signature | 340 | 351 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g0066 | 481 | PRINTS | P450 superfamily signature | 284 | 301 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g0066 | 481 | FunFam | Taxadiene 5-alpha hydroxylase | 23 | 471 | - | - | |
| Mch4g0066 | 481 | PANTHER | CYTOCHROME P450 26 | 31 | 451 | - | GO:0004497(PANTHER)|GO:0005783(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)|GO:0051777(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch11g1180 | Mch-Chr11:8299508 | Mch4g0066 | Mch-Chr4:460172 | 3.80E-95 | dispersed | |
| Mch4g0066 | Mch-Chr4:460172 | Mch6g1342 | Mch-Chr6:11138427 | 2.35E-85 | dispersed | |
| Mch4g0066 | Mch-Chr4:460172 | Mch11g0286 | Mch-Chr11:1784827 | 1.92E-71 | transposed |
Pathway information