Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0077 ATGGCGGCCGAGCCTGTATCTCAAAATCATAGAGCCAAAATCCACATCCTCTATTCGATTCTACTGCTGCTGTTTGCTAATTTTGGACTTGCAGCTACGGCCAAGCTTCAACGAGACGAAGTGAAAGCGTTGAAAGAGATCGAGAAGAAGATAGGGAAAAGCGACTGGAATTTCACTCAAGATCCTTGCAGTGGAGAAGGAAATTGGCGCGTTAATGGAAGAAAAGGCTTCGAAAGCTCCGTCACCTGCGATTGCAGTTTCAACCACAACTCCACTTGCCATATCGTCGCCATAGCGCTAAAGTCCCAGAATCTATCTGGCGTCGTGCCACCAGAGTTTTCCAAGCTTCGTTACCTCAAACAGCTAGATCTCAGTCGAAACTGTCTCACTGGTTCTATCCCTCCCCAATGGGCTACCATACGATTGGTAGAACTCTCTTTCATGGGAAATAGATTGTCCGGCCCATTCCCGAAAGTTCTTACCAATATCACCACTCTCAGAAACCTGAGCATCGAAGGAAATCAATTTACCGGCAGAATACCACCAGAGGTCGGAAAACTTGTCAATTTGCAAAAACTTGTTCTGGCATCAAATGCCTTGACCGGAGAATTGCCTAGAGCACTAGCGAAGTTGTCAAACTTAACTGATATGAGGATAAGTGACAACAACTTCTCTGGAAAGATACCCGAGTTCATTAGCAATTGGACACAGATTGAAAAACTGCATATACAAGGCTGCTCCCTCGAGGGGCCCATACCTTCAAGTATCTCCACCATGACAAGTTTAACTGATCTGAGAATATCTGACTTAAAAGGTGGAAGGTCCACTTTTCCACCGTTGAGCAAAATGGAATCCATGAAGACGATGATACTGAGGAATTGCTTCATTGTTGGAGAAATCCCCAAATACATCGGGGAGATGAAAAAATTGAAAAACTTAGACCTCAGCTACAATGACTTGACTGGCGAAGTTCCTGCTTCTTTCGATCAACTAGATAAAATAGATTACATGGATCTTTCTAACAACAATTTTACTTGGGAAAGCTCGAGCCCAGCTGAGTGTCCTCGAGGGAGTGTAAATTTAGTAGAGACCTACTCACCGGCTGCAGAAAAATTAACTAGAATCCATCCCTGCCTAAAAAGGAACTTCCCGTGTTCTGCATCAAAGGAACAGCATCGCTACTCTTTGCACATTAACTGTGGCGGTAAAGAAGCATTTGTAAAGGGTGAAAGGTATGAAGCGGATAGAGAAGGTGCTTCAATGTTTTATACCGGTCAGAATTGGGCTTTTAGCAGCACGGGAAGTTTTATGGACAATGACGTTGATGCTGATAACTATATCATAACAAATACATCTGCCCTTTCAAATGTGTCTGTGACTGATTCAGAACTGTACACAAGAGCAAGAATTTCTCCTCAATCTCTTACATACTATGGGCTCTGTCTCATAAATGGGAATTATACTGTTAAACTCCACTTTGCAGAAATCGTATTTATAAATGACAGTTCATTCAACAGCCTTGGGAAACGAATTTTTGATGTGTACATCCAGGAAAAGCTGGTCCTGAAAGATTTTGATATAGAAAATGAAGCAGGGGGTACAGGCAAGCCTGTTATAAAAACATTTACTGCTGTTGTCACGAGTCATACATTGAAGATCCATTTCTACTGGGCTGGAAGAGGGACAACAGGAATCCCACTTAGAGGAAATTACGGCCCTCTGATATCTGCTATTTCAGTAGATCCTAATTTTACACCTCCTGTGAACCCCGTGAAGAAGAATCACGCCATCATAATTATTGGGACAACAGCAGCAGCATTTGTTCTCCTTCTTCTGGTGTTAGGTATTATGAGGAGGAAGGGATGGCTGGGAGGCAATGCATCTGTGGATAAAGAGCTTAGAGGTATAGACCTGCAAACAGGATTATTTACAATAAGACAAATTAAAGCAGCCACGAAGAATTTTGATGCTGCAAACAAAGTTGGGGAAGGTGGTTTTGGTGCAGTGTACAAGGGTCTCTTGTCAGATGGCACTATAATTGCAGTCAAGCAGCTATCGTCAAAATCAAAGCAAGGAAATCGAGAATTTGTTAATGAAATAGGCATGATATCTGCACTGCAACACCCAAATCTTGTCAAGCTTTATGGATGTTGTGTTGATGGGAACCAACTGATGTTGATTTATGAATACATGGAAAATAATTGCCTATCACGTGCCCTTTTTAAAAATGACCCAGCATCTAGATTGAGATTGGACTGGCCTACCAGGCAGAAAATTTGCCTGGGTATAGCTCGAGGTTTAGCCTATCTGCATGAAGAGTCGAGATTAAAAATTGTACATAGGGACATCAAGACAAGTAATGTGTTGCTTGATAAGGATTTCAATGCTAAAATTTCTGATTTTGGTTTGGCTAAGCTTCATGAAGATGACAATACCCATATCAGCACCCGAGTTGCCGGAACCATTGGTTACATGGCACCTGAATATGCAATGCGTGGATGCTTGACCAGTAAAGCCGACGTTTATAGCTTTGGAGTTGTTGCCTTGGAAATTGTCAGTGGCAAAAGCAATACCAACTACAGGCCTAAGGAGGATTTTATTTACCTTCTTGATTGGGCATCTGTTCTGCAAGAAAAAGGAAACCTATTGGAGTTGGTAGACCCAGCCCTGGGGTCAGATTATGTATCAGAAGAAGCCATGGTGATGCTGAACGTGGCTCTCCTCTGCACCAACGCATCCCCCACTCTGCGGCCTCTAATGTCCCAAGTGGTCAGTATGCTCGAAGGTCGAACTCCAGTCCAAGCCCTTCTCTCTGATCCAGGATTTTCAGCCATCAATTCCAAATTGAAGGCCCTCAGAAATCACTTTTGGCAACAATTGAGCCCCACCCACAGTTTATCATTGGACGATTTCCCCAGTGATTCCTTGAGTTCCAATGTGGAGGCAGAAGAGAATGAGAATCTCGTAAGTCACACCCCATTGCCATCTGTCAAATCTGATCCATGA 3006 43.08 MAAEPVSQNHRAKIHILYSILLLLFANFGLAATAKLQRDEVKALKEIEKKIGKSDWNFTQDPCSGEGNWRVNGRKGFESSVTCDCSFNHNSTCHIVAIALKSQNLSGVVPPEFSKLRYLKQLDLSRNCLTGSIPPQWATIRLVELSFMGNRLSGPFPKVLTNITTLRNLSIEGNQFTGRIPPEVGKLVNLQKLVLASNALTGELPRALAKLSNLTDMRISDNNFSGKIPEFISNWTQIEKLHIQGCSLEGPIPSSISTMTSLTDLRISDLKGGRSTFPPLSKMESMKTMILRNCFIVGEIPKYIGEMKKLKNLDLSYNDLTGEVPASFDQLDKIDYMDLSNNNFTWESSSPAECPRGSVNLVETYSPAAEKLTRIHPCLKRNFPCSASKEQHRYSLHINCGGKEAFVKGERYEADREGASMFYTGQNWAFSSTGSFMDNDVDADNYIITNTSALSNVSVTDSELYTRARISPQSLTYYGLCLINGNYTVKLHFAEIVFINDSSFNSLGKRIFDVYIQEKLVLKDFDIENEAGGTGKPVIKTFTAVVTSHTLKIHFYWAGRGTTGIPLRGNYGPLISAISVDPNFTPPVNPVKKNHAIIIIGTTAAAFVLLLLVLGIMRRKGWLGGNASVDKELRGIDLQTGLFTIRQIKAATKNFDAANKVGEGGFGAVYKGLLSDGTIIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCVDGNQLMLIYEYMENNCLSRALFKNDPASRLRLDWPTRQKICLGIARGLAYLHEESRLKIVHRDIKTSNVLLDKDFNAKISDFGLAKLHEDDNTHISTRVAGTIGYMAPEYAMRGCLTSKADVYSFGVVALEIVSGKSNTNYRPKEDFIYLLDWASVLQEKGNLLELVDPALGSDYVSEEAMVMLNVALLCTNASPTLRPLMSQVVSMLEGRTPVQALLSDPGFSAINSKLKALRNHFWQQLSPTHSLSLDDFPSDSLSSNVEAEENENLVSHTPLPSVKSDP 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 524273 535498 - MC04g0070 Mch4g0077 684789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0077 1001 MobiDBLite consensus disorder prediction 977 1001 - -
Mch4g0077 1001 Gene3D Ribonuclease Inhibitor 208 366 IPR032675 -
Mch4g0077 1001 SMART serkin_6 655 925 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g0077 1001 ProSitePatterns Protein kinases ATP-binding region signature. 661 683 IPR017441 GO:0005524(InterPro)
Mch4g0077 1001 SUPERFAMILY Protein kinase-like (PK-like) 640 928 IPR011009 -
Mch4g0077 1001 Pfam Leucine rich repeat 286 344 IPR001611 GO:0005515(InterPro)
Mch4g0077 1001 Pfam Protein tyrosine and serine/threonine kinase 658 870 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g0077 1001 Pfam Malectin domain 395 578 IPR021720 -
Mch4g0077 1001 Gene3D Ribonuclease Inhibitor 39 207 IPR032675 -
Mch4g0077 1001 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 22 942 IPR051824 -
Mch4g0077 1001 Gene3D Transferase(Phosphotransferase) domain 1 731 936 - -
Mch4g0077 1001 ProSitePatterns Serine/Threonine protein kinases active-site signature. 778 790 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g0077 1001 FunFam Putative LRR receptor-like serine/threonine-protein kinase 731 939 - -
Mch4g0077 1001 Pfam Leucine Rich Repeat 213 235 IPR001611 GO:0005515(InterPro)
Mch4g0077 1001 Pfam Leucine Rich Repeat 189 211 IPR001611 GO:0005515(InterPro)
Mch4g0077 1001 Pfam Leucine Rich Repeat 119 137 IPR001611 GO:0005515(InterPro)
Mch4g0077 1001 Pfam Leucine Rich Repeat 166 187 IPR001611 GO:0005515(InterPro)
Mch4g0077 1001 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 393 583 - -
Mch4g0077 1001 CDD STKc_IRAK 661 929 - -
Mch4g0077 1001 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 42 204 - -
Mch4g0077 1001 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 625 730 - -
Mch4g0077 1001 Gene3D Phosphorylase Kinase; domain 1 627 730 - -
Mch4g0077 1001 ProSiteProfiles Protein kinase domain profile. 655 937 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g0077 1001 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 205 271 - -
Mch4g0077 1001 Gene3D - 391 582 - -
Mch4g0077 1001 SUPERFAMILY L domain-like 90 345 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0989 Mch-Chr11:6820649 Mch4g0077 Mch-Chr4:524273 8.63E-216 dispersed
Mch11g0991 Mch-Chr11:6854818 Mch4g0077 Mch-Chr4:524273 1.80E-235 dispersed
Mch3g1048 Mch-Chr3:14079822 Mch4g0077 Mch-Chr4:524273 4.54E-205 dispersed
Mch4g0037 Mch-Chr4:268672 Mch4g0077 Mch-Chr4:524273 8.88E-165 dispersed
Mch4g0077 Mch-Chr4:524273 Mch5g1926 Mch-Chr5:19192939 8.73E-100 dispersed
Mch7g0868 Mch-Chr7:13220381 Mch4g0077 Mch-Chr4:524273 5.55E-67 dispersed
Mch2g1912 Mch-Chr2:19619078 Mch4g0077 Mch-Chr4:524273 1.52E-31 transposed
Mch10g1037 Mch-Chr10:7533418 Mch4g0077 Mch-Chr4:524273 8.36E-245 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77302 PF07714 PK_Tyr_Ser-Thr 1.20E-49 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0077 - - - 0.0