Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0086 ATGAGGAAGAGGGAAAGAGAGAACCCTTGTGGGGTTTGTGGACACTATCACAAATACGAAGAAGGGGAAGTCTGTGGGATTTGTGGTCATCGGGTTCCCGCTACATCCGAGAAAACGTCGTTGCAAGTCAGCGCGTTTCCTTCTGAGATCCTGCCAGAATTTCTTTATTTGGGAAGCTATGATAACGCTTCACGCTCTGAACTTTTGAAGACTCAGGGAATCTCCCGCGTTCTTAACACTGTGCCTGCTTGTCAAAATCTCTACAAGAACTCCTTCACTTATCACTGCCTCCAATATGATAAGACCTTACCTTTTGATGACGCAGTCGAATTTCTAGAGCAATGCGAAAGGGACAAGGCTCGTGTTCTGGTGCATTGCATGTCAGGAAAGAACAGGTCTCCAGCTATTGTAATAGCATTCTTGATGAAATGCAAGGGTTGGAGACTTGCTCAGAGTTACCAGTGGGTGAAAGAGCGGAGGCCACCCGTTGACTTAACTGAGGCCGTGTATCAGCAGTTGCAAGAGTATGAACAGAAGGTCTTTGGATCAACAGAAAATTGCATCCCAAACTTGCCAATTTTCCCTCCTGTTGGTCTGCCTTCTTTTAGCTTCGGCTTCCCAAAGAGCAGCGACCCAGTTCCCATAACTCCATTCAACAGCATCGGTGCCACATCGATCTTTTCCCGCCCTACCGTAGACGTACCTTCCCACGAGTTCACGTTCGGAGCTGGCCAGACTCAAAACAGTTTCTCTGGAAGCCCTTTCAGCGCCAATCCAAGGAACTCGACAAGCAGCAACATCCAAATGGACAGTGCTTAA 819 47.86 MRKRERENPCGVCGHYHKYEEGEVCGICGHRVPATSEKTSLQVSAFPSEILPEFLYLGSYDNASRSELLKTQGISRVLNTVPACQNLYKNSFTYHCLQYDKTLPFDDAVEFLEQCERDKARVLVHCMSGKNRSPAIVIAFLMKCKGWRLAQSYQWVKERRPPVDLTEAVYQQLQEYEQKVFGSTENCIPNLPIFPPVGLPSFSFGFPKSSDPVPITPFNSIGATSIFSRPTVDVPSHEFTFGAGQTQNSFSGSPFSANPRNSTSSNIQMDSA 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 579647 583631 + MC04g0078 Mch4g0086 684798

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0086 272 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 182 IPR029021 -
Mch4g0086 272 ProSiteProfiles Dual specificity protein phosphatase domain profile. 46 182 IPR020422 GO:0006470(InterPro)
Mch4g0086 272 Pfam Dual specificity phosphatase, catalytic domain 55 179 IPR000340 GO:0016311(InterPro)
Mch4g0086 272 MobiDBLite consensus disorder prediction 250 272 - -
Mch4g0086 272 SMART dsp_5 46 179 IPR020422 GO:0006470(InterPro)
Mch4g0086 272 CDD DSP_plant_IBR5-like 47 176 - -
Mch4g0086 272 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 271 IPR044212 GO:0005634(PANTHER)|GO:0009734(InterPro)|GO:0009738(InterPro)|GO:0033549(PANTHER)|GO:0033549(InterPro)|GO:0043407(InterPro)
Mch4g0086 272 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 103 171 IPR000387 GO:0016311(InterPro)
Mch4g0086 272 FunFam Protein-tyrosine-phosphatase IBR5 36 186 - -
Mch4g0086 272 ProSitePatterns Tyrosine specific protein phosphatases active site. 124 134 IPR016130 GO:0016311(InterPro)
Mch4g0086 272 Gene3D Protein tyrosine phosphatase superfamily 30 184 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0086 K04459 - - csv:101211000 524.628
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 1.1e-188 656.8
Mch4g0722 . 48 619 Protein tyrosine phosphatase (PTP) family AT3G50110 58.2 1.5e-180 629.8
Mch8g2431 . 1 398 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 3.4e-154 541.6
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 66.5 0.0e+00 1120.5
Mch6g0629 . 1 1248 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1087.8
Mch6g0258 . 3 314 Protein tyrosine phosphatase (PTP) family AT5G58160 55.1 8.4e-95 345.9
Mch11g1552 . 86 376 Protein tyrosine phosphatase (PTP) family AT1G71860 66.2 1.7e-111 399.4
Mch1g0184 . 21 920 Protein tyrosine phosphatase (PTP) family AT5G23720 64.5 0.0e+00 1077.4
Mch4g0086 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 1.2e-71 266.2
Mch9g1831 . 96 373 Protein tyrosine phosphatase (PTP) family AT3G52180 70.5 5.3e-114 407.5
Mch9g1401 . 20 277 Protein tyrosine phosphatase (PTP) family AT3G10940 66.4 2.7e-102 368.6
Mch8g1510 . 254 702 Protein tyrosine phosphatase (PTP) family AT3G01510 72.2 1.8e-201 698.7
Mch2g0685 . 9 231 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 9.5e-78 287.0
Mch4g0093 . 10 243 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 9.8e-75 276.9
Mch8g3193 . 17 264 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 1.2e-80 297.0
Mch8g3193 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 51.0 8.2e-47 183.7
Mch2g0685 . 43 230 Protein tyrosine phosphatase (PTP) family AT4G03960 68.6 2.1e-72 268.9
Mch4g0093 . 43 242 Protein tyrosine phosphatase (PTP) family AT4G03960 62.5 4.0e-68 254.6
Mch6g1423 . 5 185 Protein tyrosine phosphatase (PTP) family AT4G03960 53.6 4.3e-54 208.0
Mch6g1423 . 7 216 Protein tyrosine phosphatase (PTP) family AT3G02800 67.0 4.0e-79 291.2
Mch2g0685 . 40 224 Protein tyrosine phosphatase (PTP) family AT3G02800 55.1 2.2e-53 205.7
Mch9g1591 . 1 187 Protein tyrosine phosphatase (PTP) family AT3G55270 66.7 1.8e-63 241.1
Mch8g2431 . 1 398 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 3.4e-154 541.6
Mch4g0722 . 38 619 Protein tyrosine phosphatase (PTP) family AT3G19420 66.1 6.3e-221 763.8
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G19420 61.8 1.7e-197 686.0
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 1.1e-188 656.8
Mch4g0722 . 48 619 Protein tyrosine phosphatase (PTP) family AT3G50110 58.2 1.5e-180 629.8
Mch6g0629 . 1 1248 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1087.8
Mch6g0258 . 3 314 Protein tyrosine phosphatase (PTP) family AT5G58160 55.1 8.4e-95 345.9
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 66.5 0.0e+00 1120.5
Mch10g1638 . 10 319 Protein tyrosine phosphatase (PTP) family AT2G35320 61.9 9.2e-112 400.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006354 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 3 2 1 38