Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0091 ATGCGGCGGGGCAGGGCCACAGATCCACCGACGGCTGGGCAGACGACTCATGGACCAGTTAAAGAAGTGCGATTCAGAGGCGTTCGGAAGCGGCCATGGGGCCGGTACGCCGCCGAGATTAGAGATCCCTGGAAGAAGACTCGCGTCTGGCTCGGCACCTTCGATACGGCGGAGGATGCCGCCCGAGCTTACGACGCTGCCGCTCTCTCTCTCCGCGGCCCGAAGGCTAAAACGAACTTCCCTCTGCATCCATCGGCGATCTCTGTTCATCACCAAATCCCATTCTCGCAGGAGTTTCACGACTCCGGCGGACTCTGCAAGATTAGCAACATTTCGGTCAATAGACCTACATCGAGCAGTTTGAGTTCCACCGTGGAGTCTTTCAGCGGGCCTAGGGTTTCCATTCCGGCTCCGTCCGTTCCAAAGCTCCATCGGAAGTCCCTGCCGCCGGTCTCCCCCGACGATTGCCACAGCGACTGTGATTCATCGTCCTCGGTTGTTGATGACAGTGAGGAATATGCACGAACCTCTTCAATCCGCAGAGTGTTGCCGTTCGATCTGAACCTACCTCCTCCACTGCCGCCGCACGACGTCGATTTATCCGGTGATGATCTTCAAGCCACTGCTCTGTGT 633 57.98 MRRGRATDPPTAGQTTHGPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDAARAYDAAALSLRGPKAKTNFPLHPSAISVHHQIPFSQEFHDSGGLCKISNISVNRPTSSSLSSTVESFSGPRVSIPAPSVPKLHRKSLPPVSPDDCHSDCDSSSSVVDDSEEYARTSSIRRVLPFDLNLPPPLPPHDVDLSGDDLQATALC 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 600449 601081 - MC04g0082 Mch4g0091 684803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0091 211 SUPERFAMILY DNA-binding domain 25 82 IPR016177 GO:0003677(InterPro)
Mch4g0091 211 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g0091 211 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g0091 211 Pfam AP2 domain 24 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g0091 211 CDD AP2 24 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g0091 211 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g0091 211 Gene3D AP2/ERF domain 23 83 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g0091 211 FunFam Ethylene-responsive transcription factor 2 23 83 - -
Mch4g0091 211 SMART rav1_2 24 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g0091 211 MobiDBLite consensus disorder prediction 117 175 - -
Mch4g0091 211 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0091 Mch-Chr4:600449 Mch4g0138 Mch-Chr4:914688 7.13E-31 dispersed
Mch10g1359 Mch-Chr10:12158064 Mch4g0091 Mch-Chr4:600449 8.97E-67 transposed
Mch2g0690 Mch-Chr2:4735721 Mch4g0091 Mch-Chr4:600449 9.56E-98 wgd
Mch3g1111 Mch-Chr3:14514950 Mch4g0091 Mch-Chr4:600449 2.84E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43111 PF00847 AP2 7.80E-15 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0091 K09286 - csv:101210265 304.293