Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0093 ATGACACTCGACCACCTCTCCGTCTCCGGCCAGATATGCAGTTCCATCGAAGCCGATGATTCCGACCACCGCCATCCTTCTATTCCTCCGGCGCCTCTCGGTGACGTCGTCAATGGAGGCGACTGCGACGACGCTGGAGACGACCTCTTCGTTCCTCCCCTCAACTTCGCCGTCGTTGACAATGGCATTTTCCGCTCCGGCTTCCCCGACTCTTCCAACTTCTCCTTCTTGCACACCTTAGGCCTCCGTTCTATCATATGTCTTTGTCCGGAGCCGTATCCTGAGGACAGCATGGATTTCCTCAAGTCCAACGGGATCCGATTGTTTCAATTCGGAATTGAAGGTACTAAGGCCGGTTCAGACAAGGCTGATGCATATGTAAACTTGATTCTCGAGTGTATGAGGAATTTGGATATGAGCGCTGAGCATATGTACTATTTGGAGCCTTTTGTGAACATTCCAGACGATTCAATTCGTGAAGCACTTAAAGTTATTCTTGATGTGAGGAATCGTCCAGTTTTAATCCATTGCAAACGAGGGAAGCATCGAACTGGTTGCGTTGTGGGATGCTTCAGAAAGTTGCAGAAATGGTGCCTAACGTCAGTCTTTGACGAGTACCAGCGATTCGCCGCTGCCAAGGCAAGAATTTCAGATCAGAGGTTCATTGAACGATTCGATGTTTCTGGCCTGAAGCATCTGCCATCATCATTTTCATGTTCCAAAAGGTAA 729 48.97 MTLDHLSVSGQICSSIEADDSDHRHPSIPPAPLGDVVNGGDCDDAGDDLFVPPLNFAVVDNGIFRSGFPDSSNFSFLHTLGLRSIICLCPEPYPEDSMDFLKSNGIRLFQFGIEGTKAGSDKADAYVNLILECMRNLDMSAEHMYYLEPFVNIPDDSIREALKVILDVRNRPVLIHCKRGKHRTGCVVGCFRKLQKWCLTSVFDEYQRFAAAKARISDQRFIERFDVSGLKHLPSSFSCSKR 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 621199 624006 + MC04g0084 Mch4g0093 684805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0093 242 PRINTS Plant and fungal dual specificity phosphatase signature 87 100 IPR020428 GO:0016791(InterPro)
Mch4g0093 242 PRINTS Plant and fungal dual specificity phosphatase signature 50 67 IPR020428 GO:0016791(InterPro)
Mch4g0093 242 PRINTS Plant and fungal dual specificity phosphatase signature 106 120 IPR020428 GO:0016791(InterPro)
Mch4g0093 242 PRINTS Plant and fungal dual specificity phosphatase signature 153 167 IPR020428 GO:0016791(InterPro)
Mch4g0093 242 CDD PFA-DSP_Siw14 49 226 - -
Mch4g0093 242 Gene3D Protein tyrosine phosphatase superfamily 49 229 IPR029021 -
Mch4g0093 242 PANTHER TYROSINE-PROTEIN PHOSPHATASE 35 236 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Mch4g0093 242 ProSitePatterns Tyrosine specific protein phosphatases active site. 175 185 IPR016130 GO:0016311(InterPro)
Mch4g0093 242 ProSiteProfiles Dual specificity protein phosphatase domain profile. 55 239 IPR020422 GO:0006470(InterPro)
Mch4g0093 242 Pfam Tyrosine phosphatase family 51 231 IPR004861 -
Mch4g0093 242 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 50 226 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0093 Mch-Chr4:621199 Mch6g1423 Mch-Chr6:12780133 2.37E-69 dispersed
Mch2g0685 Mch-Chr2:4675647 Mch4g0093 Mch-Chr4:621199 1.08E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0093 K18045 - csv:101209768 328.561