Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0134 ATGGACCGCCGTGTTCGTACAAACCCATTTGTCTCCGAGCAAGAAGATCCCGAACCCACGTCGGACGATGGCCTCCCGCTGGAGTCACCCTCCGACGGCAATGACTCCAAGCTCGCCGCCGGCCCCGCCCCCAAAAAGAGTAGAAGGGGCGTGCAGAAGCGAGTGGTGTCAGTACCGATCGGCGACGTGGACGGTCCTAAGAGCAAAGGGGAAGCATATCCACCGTCGGATTCGTGGGCATGGAGGAAATACGGCCAAAAGCCCATCAAAGGTTCTCCTTATCCCAGGGGATATTACCGATGTAGTAGCTCCAAGGGCTGCCCCGCAAGAAAGCAAGTAGAGAGAAGCCGTGTGGACCCCACCAAGCTCGTTATCACCTACGCTTTCGACCACAACCACCAACTCCCGGCCGCCAAATCTCACCACCACCACCACCACCACCATTCTTCGCCGTCTCCCGCCGCGATCACCGCCGCTTCCGCCGCCGCCGACGACTCGTCCCCTGGGAGCACTACGACGTCGTCCTCCACGTCCTCCGGCGACCACACGAACATGACCCCCACGTCGCCGTCTCCGGCGGCCAAGTTCGAGGAGGCGGCGGCGGTCTTCGCGAGTCAGCCGGAGCTGGAACTCGGCGGCGACTCGCTGCTTATTAAACCCTGCCTCGGGGATTTCGGGTGGTTGGCTGACGTGGCGTACGATAGGATCCTCGAGGGCCCGATTTGCGGGGGAGGCGACATCTTCGACGACGCCGACGTCATGGTTTTGTCCACCAGAGTGGATGACGTGGACGAGTCGTTATTCGCGGATCTTGGGGAATTACCCGAAGGCTCCGTGATTTTCGGCCGGAGAGCGGTCCACACGGATGGACCGAACCGGACGCGTGGCAGAGTTTTAAACTGC 903 61.35 MDRRVRTNPFVSEQEDPEPTSDDGLPLESPSDGNDSKLAAGPAPKKSRRGVQKRVVSVPIGDVDGPKSKGEAYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLVITYAFDHNHQLPAAKSHHHHHHHHSSPSPAAITAASAAADDSSPGSTTTSSSTSSGDHTNMTPTSPSPAAKFEEAAAVFASQPELELGGDSLLIKPCLGDFGWLADVAYDRILEGPICGGGDIFDDADVMVLSTRVDDVDESLFADLGELPEGSVIFGRRAVHTDGPNRTRGRVLNC 301
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 885378 887341 + MC04g0119 Mch4g0134 684846
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0134 301 ProSiteProfiles WRKY domain profile. 76 136 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0134 301 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 40 200 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
Mch4g0134 301 MobiDBLite consensus disorder prediction 163 191 - -
Mch4g0134 301 FunFam WRKY transcription factor 65 62 136 - -
Mch4g0134 301 Pfam WRKY DNA -binding domain 77 134 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0134 301 SMART WRKY_cls 75 135 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0134 301 MobiDBLite consensus disorder prediction 137 192 - -
Mch4g0134 301 SUPERFAMILY WRKY DNA-binding domain 71 136 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0134 301 Gene3D WRKY domain 65 137 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0134 301 MobiDBLite consensus disorder prediction 1 77 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0134 Mch-Chr4:885378 Mch8g2135 Mch-Chr8:24456203 1.27E-29 dispersed
Mch3g1057 Mch-Chr3:14149178 Mch4g0134 Mch-Chr4:885378 4.99E-37 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43115 PF03106 WRKY 1.20E-24 CL0274 Mch TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0134 - - - 0.0