Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0135 ATGATTTCGAGATCGTATACAAATCTTTTAGATTTGGCTTCTGGAAATTTTCCAGCAATGGAAGTGAAAAGGAAGCGGTTTCCACGAGTCATGACTGTTCCGGGTAATGTAGCTGAGCTTGATGACGATCAAGACTATAGTGTGACATCCGAAAACCCATCATCAATTTCCTCAGATCGGATGATAATTGTCGCCAACCAGCTTCCTTTAAGAGCAAAGCGAAGGGAAGATGATAATTCCTGGAGTTTCAGTTGGAACGAAGATTCACTGCTTTTACAGCTCAAGGATGGCTTACCAGAAGACATGGAGGTTCTTTATGTCGGTTCACTGAAAGTCGATATCCAACCAGACGAGCAAGATGAGGTCTCCCAGATTTTGTTGGAGAAATTTAAGTGTATTCCTACATTTTTGCCTCCTCATATTTTGGAAAAGTTTTATGATGGTTTCTGCAAGAGGCATTTGTGGCCTCTTTTTCATTATATGTTGCCATATTCTGCTGACCAGAAGGGTCGATTTGATCGCTCCATGTGGGAAGCCTATGTATCAGCAAATAAGTTATTTTTCCAGAAAGTAGTTGAGGTCATCAACCCAGATGATGACTATATCTGGATCCATGATTACCATTTGATGGTACTGCCCACTTTCTTGAGGAGGCGCTTTAACAGAGTTAAAATGGGATTTTTTCTTCATAGTCCATTTCCGTCATCTGAGATCTACCGCACGCTTCCTGTCAGAGAAGAGATTCTCAAGGCATTACTTAACTCTGATATCATTGGGTTTCACACTTTTGATTATGCTCGCCATTTTCTTTCTTGTTGTAGTCGAATGTTGGGTTTGGAATACCAGTCAAAGAGAGGCTATCTTGGATTGGAATACTATGGCAGGACGATTGGGATTAAGATAATGCCTGTCGGTATTCATATGAGTCGGATTGAATCCGTGATGAAACTGGCAGACGAGGATGCTAAGACTAGGGAGCTAACACAACAATTTGCAGGGAAGACGGTATTGCTTGGTGTTGATGATCTGGACATTTTCAAAGGCATAAACGTGAAATTGTTAGCGATGGAACAGCTACTTAAGCAACATCCAAAGTGGAAGGGAAAGGCTGTACTGATCCAAATTGTAAACCCTGCCCGAGGCAAGGGCAGAGATTTACAAGAAATAGAAGATGAAATAAAAGAAAGCTGCAGCAGGATCAACAAGGAATATGGGCATCCTGACTACGAGCCAATAGTACTTCTCGACAGGCATGTGCCAATTACAGAAAGGGTTGCTTATTATAGCATTGCTGAGTGCGTAGTTGTCACTGCTGTTAGAGATGGGATGAACCTTACTCCTTACGAGTACGTTGTCTGTAGACAAGGAATATCTACCTCCCAAAAATGTTTAAACTTCAGCGGACCAAGAAAGAGCATGCTTGTCATATCCGAATTTATTGGGTGTTCTCCGTCACTGAGTGGAGCATTTCGTGTCAACCCATGGAATGTTGAAAGGACAGCAGAGGCTCTGAATGAAGCTATCTCAATGGCTGATTCAGAGAAGCAGTTGCGACACGAGAAGCATTATCGTTATGTTGCCACCCACGACGTGGCTTATTGGTCTCGTAGTTTCTTGCAAGATATGGAGAGAACTTGCTCAGATCATTTCAGGAGACGATGTTGGGGAATTGGTTTTAGTTTTGGATTCAGGGTTGTAGCTCTTGATCCCAATTTCAGAAAACTTTCAATAGATGCCATTGTATCGGCTTACAGCAGGGCTGAAAGTCGGGCCATACTTTTGGACTACGATGGCACAGTGATGCCCCAAAACTCCATAAATAAGTCCCCAAGTGAGCAGGTTATCTCTATTCTTAACACGCTTTGTGCAGATGCCAAAAATGTAGTCTTCATTGTGAGTGGACGAGGGAGGGACAGCTTAAGCAAGTGGTTTCGCCCATGCAAGAAGCTTGGAATTGCAGCAGAACATGGATACTTTTTGAGGCAATCACAGAATGAGGAGTGGAAGATATGTGGCCAAAGTTCTGATTTTGGATGGATGCAGATTGCCGAACCTGTTATGAAATTATACACCGAGGCTACTGATGGTTCTTCTATTGAAAGAAAGGAAAGTGCTTTGGTCTGGCAGTACCGAGATGCAGATCCTGGATTTGGATCTGCCCAGGCAAAGGAGATGTTGGATCATTTAGAGAGTGTTTTAGCAAATGAACCTGTTGCAGTCAAAAGCGGCCAGCTCATCGTTGAAGTGAAACCGCAGGGGGTTAGTAAAGGCCTAGTTGCTGAAAAGATATTTTCATCAATGGCTGAGGATGGAAAACTTGCTGACTTTGTGTTGTGTATTGGCGACGACAGATCTGATGAGGACATGTTTGAAATAATTGGTAATGCATTGTCAAGTAATATTCTTTCTCCAACAACATCAGTTTTTGCCTGCACAGTTGGACAGAAGCCAAGCAAAGCCAAATATTATTTGGATGACACAGCTGACGTGATAAGCATGCTAGAATACCTGGCCGAGGCTTCTAGTCCATTGCCATCCTCTGACGACGAAAAAGGTGAAAATGCTTCTTGA 2571 42.78 MISRSYTNLLDLASGNFPAMEVKRKRFPRVMTVPGNVAELDDDQDYSVTSENPSSISSDRMIIVANQLPLRAKRREDDNSWSFSWNEDSLLLQLKDGLPEDMEVLYVGSLKVDIQPDEQDEVSQILLEKFKCIPTFLPPHILEKFYDGFCKRHLWPLFHYMLPYSADQKGRFDRSMWEAYVSANKLFFQKVVEVINPDDDYIWIHDYHLMVLPTFLRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTIGIKIMPVGIHMSRIESVMKLADEDAKTRELTQQFAGKTVLLGVDDLDIFKGINVKLLAMEQLLKQHPKWKGKAVLIQIVNPARGKGRDLQEIEDEIKESCSRINKEYGHPDYEPIVLLDRHVPITERVAYYSIAECVVVTAVRDGMNLTPYEYVVCRQGISTSQKCLNFSGPRKSMLVISEFIGCSPSLSGAFRVNPWNVERTAEALNEAISMADSEKQLRHEKHYRYVATHDVAYWSRSFLQDMERTCSDHFRRRCWGIGFSFGFRVVALDPNFRKLSIDAIVSAYSRAESRAILLDYDGTVMPQNSINKSPSEQVISILNTLCADAKNVVFIVSGRGRDSLSKWFRPCKKLGIAAEHGYFLRQSQNEEWKICGQSSDFGWMQIAEPVMKLYTEATDGSSIERKESALVWQYRDADPGFGSAQAKEMLDHLESVLANEPVAVKSGQLIVEVKPQGVSKGLVAEKIFSSMAEDGKLADFVLCIGDDRSDEDMFEIIGNALSSNILSPTTSVFACTVGQKPSKAKYYLDDTADVISMLEYLAEASSPLPSSDDEKGENAS 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 891787 899205 + MC04g0120 Mch4g0135 684847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0135 856 Gene3D - 589 690 IPR023214 -
Mch4g0135 856 Gene3D - 718 850 IPR023214 -
Mch4g0135 856 CDD HAD_TPP 591 830 - -
Mch4g0135 856 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 546 - -
Mch4g0135 856 NCBIfam trehalose-phosphatase 588 838 IPR003337 GO:0005992(InterPro)
Mch4g0135 856 SUPERFAMILY HAD-like 590 838 IPR036412 -
Mch4g0135 856 CDD GT20_TPS 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Mch4g0135 856 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 312 - -
Mch4g0135 856 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 840 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Mch4g0135 856 Gene3D Glycogen Phosphorylase B; 314 527 - -
Mch4g0135 856 FunFam Alpha,alpha-trehalose-phosphate synthase 314 527 - -
Mch4g0135 856 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 719 850 - -
Mch4g0135 856 Gene3D Glycogen Phosphorylase B; 53 313 - -
Mch4g0135 856 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 589 706 - -
Mch4g0135 856 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Mch4g0135 856 NCBIfam HAD-IIB family hydrolase 592 796 IPR006379 -
Mch4g0135 856 Pfam Trehalose-phosphatase 593 827 IPR003337 GO:0005992(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0135 Mch-Chr4:891787 Mch9g2224 Mch-Chr9:22716852 0 dispersed
Mch10g1678 Mch-Chr10:16832707 Mch4g0135 Mch-Chr4:891787 0 transposed
Mch11g0982 Mch-Chr11:6719969 Mch4g0135 Mch-Chr4:891787 1.14E-133 transposed
Mch1g1957 Mch-Chr1:19307295 Mch4g0135 Mch-Chr4:891787 0 transposed
Mch3g1040 Mch-Chr3:14029602 Mch4g0135 Mch-Chr4:891787 1.00E-135 transposed
Mch9g1356 Mch-Chr9:15890577 Mch4g0135 Mch-Chr4:891787 0 transposed
Mch2g0654 Mch-Chr2:4478704 Mch4g0135 Mch-Chr4:891787 6.65e-319 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0135 K16055 - csv:101209914 1690.24