Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0146 ATGGCTTATCCATTCTCATCCTTCTCTGCCAAAGCCTTAATCTTGTTACTCCTCCAGTTATCTTCTCTATTTAACAGCCTAACCGCTAAACTTGAGGGCATCACAACCCATAACAGCCACCACCACCACCGTACCCGATCTTCGGACACGAACCCAAGACTCCATCAAGCTTTCCTTGCCCTCCAGGCGTGGAAACAAGTCATTTACTCCGACCCCAAAAACTACACCACCAACTGGGTGGGACCTTCAGTTTGCAGCTACTTTGGAATATACTGTGCCCCATCTCTCGACGACCCAAAACTTCAAGTCGTCGCCGGAATCGACCTGAACCACGGCGACATCGCCGGATTTCTCCCAAACGAACTCGGCCTTCTCACAGACCTTGCTCTGCTCCATCTCAACAGCAACCGTTTCTGTGGGATTTTGCCTCATTCTTTGGCCAATCTCTCACTTCTCTTCGAACTTGATCTAAGCAACAACAGATTCGTAGGCCCTTTTCCCTCAGTCGTCCTCCTCCTTCCCAAATTAAGCTTTCTCGACCTCCGTTTCAACGAATTTGAAGGGCCTATTCCCCCTCAACTTTTCAACAGAACCCTCGATGCCATTTTCATAAACAGCAACCGTTTCACCAGCATTATCCCTCAGAACATCGGCGGAAAATCGGCCTCCGTGATTGTGTTTGCGAATAACAATTTTGGGGGCTGCCTTCCGCCGACGATTGCGAGCTTCGCGAATAGTTTGGAAGAACTTCTGTTGATGAACACCAATTTATCGGGTTGTTTGCCGCAAGAAGTTGGGTTTTTGTACAAATTGAGGGTTTTGGATGTGAGTTTCAATAAATTAGTTGGGCCGCTGCCTTATAGTTTGGCTGGGCTGGCCCATTTGGAGCAGTTGAATTTGGCCCACAATTCGCTGAGTGGGAATTTATACGAAGGATTATGTAATCTTCCAAATTTGGATAATGTGACGGTTTCTTACAACTACTTCTGTGAGGAAGAGGGGATTTGCCGGAACTTGACGGTGAAGGGCGTGGCCGTTGATGATCGCCGGAACTGTTTGCCGGAGAAGCCGCTGCAGAGGAGCAAGAAGGAATGCAGTGCGGTGGTTGATAATCCGGTGGACTGTTTTGAGCATCCCTGCGGCGGCGGCGGTGGCGGTGGAGGTGGTTTTGGTGCTAGTATTGCTGCGGTTCCGGCGTCGGCGCCGATTTCTTCAACTTCTTCCGTTGTTGCCCCTACCCACTCGTGA 1248 49.76 MAYPFSSFSAKALILLLLQLSSLFNSLTAKLEGITTHNSHHHHRTRSSDTNPRLHQAFLALQAWKQVIYSDPKNYTTNWVGPSVCSYFGIYCAPSLDDPKLQVVAGIDLNHGDIAGFLPNELGLLTDLALLHLNSNRFCGILPHSLANLSLLFELDLSNNRFVGPFPSVVLLLPKLSFLDLRFNEFEGPIPPQLFNRTLDAIFINSNRFTSIIPQNIGGKSASVIVFANNNFGGCLPPTIASFANSLEELLLMNTNLSGCLPQEVGFLYKLRVLDVSFNKLVGPLPYSLAGLAHLEQLNLAHNSLSGNLYEGLCNLPNLDNVTVSYNYFCEEEGICRNLTVKGVAVDDRRNCLPEKPLQRSKKECSAVVDNPVDCFEHPCGGGGGGGGGFGASIAAVPASAPISSTSSVVAPTHS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 976904 979036 + MC04g_new0016 Mch4g0146 684858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0146 415 FunFam Leucine-rich repeat extensin-like protein 1 58 219 - -
Mch4g0146 415 Pfam Leucine rich repeat 246 305 IPR001611 GO:0005515(InterPro)
Mch4g0146 415 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 28 394 IPR051582 -
Mch4g0146 415 SUPERFAMILY L domain-like 57 331 - -
Mch4g0146 415 Gene3D Ribonuclease Inhibitor 221 344 IPR032675 -
Mch4g0146 415 Gene3D Ribonuclease Inhibitor 56 220 IPR032675 -
Mch4g0146 415 Pfam Leucine Rich Repeat 130 149 IPR001611 GO:0005515(InterPro)
Mch4g0146 415 Pfam Leucine Rich Repeat 152 168 IPR001611 GO:0005515(InterPro)
Mch4g0146 415 Pfam Leucine Rich Repeat 175 195 IPR001611 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0146 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0146 Mch-Chr4:976904 Mch6g0789 Mch-Chr6:5485973 1.48E-32 dispersed
Mch4g0146 Mch-Chr4:976904 Mch5g0563 Mch-Chr5:3807556 3.36E-43 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch5g0563 . 21 389 Leucine-rich Repeat extension Gene Families AT1G62440 60.9 8.5e-53 205.7
Mch6g0789 . 54 264 Leucine-rich Repeat extension Gene Families AT1G62440 61.8 2.4e-47 187.6
Mch8g3134 . 66 238 Leucine-rich Repeat extension Gene Families AT1G62440 72.3 3.4e-46 183.7
Mch11g0248 . 39 402 Leucine-rich Repeat extension Gene Families AT1G62440 52.7 2.2e-45 181.0
Mch11g0247 . 46 406 Leucine-rich Repeat extension Gene Families AT1G62440 53.5 5.0e-45 179.9
Mch11g0245 . 46 406 Leucine-rich Repeat extension Gene Families AT1G62440 53.2 1.1e-44 178.7
Mch7g0650 . 52 243 Leucine-rich Repeat extension Gene Families AT1G62440 65.1 2.1e-43 174.5
Mch11g0250 . 39 392 Leucine-rich Repeat extension Gene Families AT1G62440 51.7 1.3e-40 165.2
Mch6g0789 . 27 406 Leucine-rich Repeat extension Gene Families AT4G13340 75.9 1.6e-72 271.2
Mch8g3134 . 32 415 Leucine-rich Repeat extension Gene Families AT4G13340 74.0 1.8e-68 257.7
Mch5g0563 . 48 390 Leucine-rich Repeat extension Gene Families AT4G13340 69.3 1.3e-55 214.9
Mch7g0650 . 19 264 Leucine-rich Repeat extension Gene Families AT4G13340 57.3 3.9e-47 186.8
Mch11g0248 . 17 220 Leucine-rich Repeat extension Gene Families AT4G13340 70.4 1.7e-42 171.4
Mch11g0250 . 22 219 Leucine-rich Repeat extension Gene Families AT4G13340 69.7 4.2e-41 166.8
Mch11g0245 . 23 220 Leucine-rich Repeat extension Gene Families AT4G13340 70.0 1.6e-40 164.9
Mch11g0247 . 23 220 Leucine-rich Repeat extension Gene Families AT4G13340 70.0 6.1e-40 162.9
Mch6g0789 . 29 413 Leucine-rich Repeat extension Gene Families AT3G24480 74.9 6.2e-78 288.5
Mch8g3134 . 29 413 Leucine-rich Repeat extension Gene Families AT3G24480 73.6 2.2e-75 280.0
Mch5g0563 . 48 388 Leucine-rich Repeat extension Gene Families AT3G24480 66.4 1.1e-55 214.5
Mch7g0650 . 22 395 Leucine-rich Repeat extension Gene Families AT3G24480 60.5 4.2e-50 196.1
Mch11g0248 . 17 220 Leucine-rich Repeat extension Gene Families AT3G24480 66.0 7.2e-42 168.7
Mch11g0247 . 25 220 Leucine-rich Repeat extension Gene Families AT3G24480 66.0 1.4e-40 164.5
Mch11g0245 . 25 220 Leucine-rich Repeat extension Gene Families AT3G24480 65.5 2.3e-40 163.7
Mch11g0250 . 22 219 Leucine-rich Repeat extension Gene Families AT3G24480 65.3 2.3e-40 163.7
Mch5g0563 . 23 384 Leucine-rich Repeat extension Gene Families AT3G22800 69.8 2.1e-67 253.4
Mch6g0789 . 66 390 Leucine-rich Repeat extension Gene Families AT3G22800 64.8 1.4e-42 171.0
Mch4g0146 . 50 380 Leucine-rich Repeat extension Gene Families AT3G22800 58.4 8.7e-37 151.8
Mch8g3134 . 78 411 Leucine-rich Repeat extension Gene Families AT3G22800 61.0 1.9e-36 150.6
Mch8g3134 . 52 411 Leucine-rich Repeat extension Gene Families AT5G25550 61.3 2.0e-40 163.7
Mch11g0250 . 50 396 Leucine-rich Repeat extension Gene Families AT5G25550 60.8 2.2e-39 160.2
Mch6g0789 . 40 401 Leucine-rich Repeat extension Gene Families AT5G25550 57.3 2.9e-39 159.8
Mch11g0248 . 36 401 Leucine-rich Repeat extension Gene Families AT5G25550 58.7 3.8e-39 159.5
Mch11g0245 . 61 401 Leucine-rich Repeat extension Gene Families AT5G25550 61.6 5.0e-39 159.1
Mch5g0563 . 22 380 Leucine-rich Repeat extension Gene Families AT5G25550 54.6 8.5e-39 158.3
Mch11g0247 . 61 401 Leucine-rich Repeat extension Gene Families AT5G25550 61.6 8.5e-39 158.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012968 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 28