Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0146 ATGGCTTATCCATTCTCATCCTTCTCTGCCAAAGCCTTAATCTTGTTACTCCTCCAGTTATCTTCTCTATTTAACAGCCTAACCGCTAAACTTGAGGGCATCACAACCCATAACAGCCACCACCACCACCGTACCCGATCTTCGGACACGAACCCAAGACTCCATCAAGCTTTCCTTGCCCTCCAGGCGTGGAAACAAGTCATTTACTCCGACCCCAAAAACTACACCACCAACTGGGTGGGACCTTCAGTTTGCAGCTACTTTGGAATATACTGTGCCCCATCTCTCGACGACCCAAAACTTCAAGTCGTCGCCGGAATCGACCTGAACCACGGCGACATCGCCGGATTTCTCCCAAACGAACTCGGCCTTCTCACAGACCTTGCTCTGCTCCATCTCAACAGCAACCGTTTCTGTGGGATTTTGCCTCATTCTTTGGCCAATCTCTCACTTCTCTTCGAACTTGATCTAAGCAACAACAGATTCGTAGGCCCTTTTCCCTCAGTCGTCCTCCTCCTTCCCAAATTAAGCTTTCTCGACCTCCGTTTCAACGAATTTGAAGGGCCTATTCCCCCTCAACTTTTCAACAGAACCCTCGATGCCATTTTCATAAACAGCAACCGTTTCACCAGCATTATCCCTCAGAACATCGGCGGAAAATCGGCCTCCGTGATTGTGTTTGCGAATAACAATTTTGGGGGCTGCCTTCCGCCGACGATTGCGAGCTTCGCGAATAGTTTGGAAGAACTTCTGTTGATGAACACCAATTTATCGGGTTGTTTGCCGCAAGAAGTTGGGTTTTTGTACAAATTGAGGGTTTTGGATGTGAGTTTCAATAAATTAGTTGGGCCGCTGCCTTATAGTTTGGCTGGGCTGGCCCATTTGGAGCAGTTGAATTTGGCCCACAATTCGCTGAGTGGGAATTTATACGAAGGATTATGTAATCTTCCAAATTTGGATAATGTGACGGTTTCTTACAACTACTTCTGTGAGGAAGAGGGGATTTGCCGGAACTTGACGGTGAAGGGCGTGGCCGTTGATGATCGCCGGAACTGTTTGCCGGAGAAGCCGCTGCAGAGGAGCAAGAAGGAATGCAGTGCGGTGGTTGATAATCCGGTGGACTGTTTTGAGCATCCCTGCGGCGGCGGCGGTGGCGGTGGAGGTGGTTTTGGTGCTAGTATTGCTGCGGTTCCGGCGTCGGCGCCGATTTCTTCAACTTCTTCCGTTGTTGCCCCTACCCACTCGTGA 1248 49.76 MAYPFSSFSAKALILLLLQLSSLFNSLTAKLEGITTHNSHHHHRTRSSDTNPRLHQAFLALQAWKQVIYSDPKNYTTNWVGPSVCSYFGIYCAPSLDDPKLQVVAGIDLNHGDIAGFLPNELGLLTDLALLHLNSNRFCGILPHSLANLSLLFELDLSNNRFVGPFPSVVLLLPKLSFLDLRFNEFEGPIPPQLFNRTLDAIFINSNRFTSIIPQNIGGKSASVIVFANNNFGGCLPPTIASFANSLEELLLMNTNLSGCLPQEVGFLYKLRVLDVSFNKLVGPLPYSLAGLAHLEQLNLAHNSLSGNLYEGLCNLPNLDNVTVSYNYFCEEEGICRNLTVKGVAVDDRRNCLPEKPLQRSKKECSAVVDNPVDCFEHPCGGGGGGGGGFGASIAAVPASAPISSTSSVVAPTHS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 976904 979036 + MC04g_new0016 Mch4g0146 684858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0146 415 FunFam Leucine-rich repeat extensin-like protein 1 58 219 - -
Mch4g0146 415 Pfam Leucine rich repeat 246 305 IPR001611 GO:0005515(InterPro)
Mch4g0146 415 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 28 394 IPR051582 -
Mch4g0146 415 SUPERFAMILY L domain-like 57 331 - -
Mch4g0146 415 Gene3D Ribonuclease Inhibitor 221 344 IPR032675 -
Mch4g0146 415 Gene3D Ribonuclease Inhibitor 56 220 IPR032675 -
Mch4g0146 415 Pfam Leucine Rich Repeat 130 149 IPR001611 GO:0005515(InterPro)
Mch4g0146 415 Pfam Leucine Rich Repeat 152 168 IPR001611 GO:0005515(InterPro)
Mch4g0146 415 Pfam Leucine Rich Repeat 175 195 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0146 Mch-Chr4:976904 Mch6g0789 Mch-Chr6:5485973 1.48E-32 dispersed
Mch4g0146 Mch-Chr4:976904 Mch5g0563 Mch-Chr5:3807556 3.36E-43 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0146 - - - 0.0