Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0162 ATGCAGCTCCGCCGTGGCCCGTCATTTTTCCGGCTGTGGACGGTGATAATGTCGGTGAGCATGGTTATGATGGGGAAGTTTGGGCTGGTTCAGTCAGCCCGGCTCCGTAACCGGACGTCAGCGCCACATTGGTCCCCGGCCACCGCCACCTGGTACGGCAGCCCCGAAGGCGACGGTAGTGACGGTGGGGCGTGTGGGTACGGGAATTTAGTGGACGTGAAGCCGTTTAAGGCGAGGGTGGGGGCGGTGAGTCCAGTACTGTTCAAGAACGGCGAAGGCTGTGGCGCCTGCTACAAGGTCCGCTGCCTGGACCCAACCATATGCGCCAGACGAGCCGTCACCATAATAGTCACCGACGAGTGTCCCGGCGGCTACTGCGCCAGTGGCCGCACCCACTTCGACCTCAGTGGTGCCGCGTTCGGCCGCATGGCAGTAGCCGGTGCTGGCTCCCGCCTCCGTAACCGCGGCGAACTCTCTATCCTCTACCGACGGACTCCCTGTACGTATCGTGGGAAGAACATAGCCTTCCATGTGAATGAAGGTTCTACAGATCATTGGCTCTCGCTTTTGGTGGAATTCGAGGATGGCGATGGAGATATTGGGTCAATGCAAATTAAACAAGCAAGCTCGAACGAGTGGATGGAGATGTCACATGTGTGGGGGGCAACTTGGTGCATAAATGGAGGGCCTCTCCGGGGCCCATTCTCAGTGAAGTTAACAACATTATCCACAGCCAAAACCCTATCAGCCAGAGATGTTATCCCCAAGAATTGGTCTCCTAAGGCCACCTACACTTCTCGCTTAAACTTCTCCTAA 816 57.23 MQLRRGPSFFRLWTVIMSVSMVMMGKFGLVQSARLRNRTSAPHWSPATATWYGSPEGDGSDGGACGYGNLVDVKPFKARVGAVSPVLFKNGEGCGACYKVRCLDPTICARRAVTIIVTDECPGGYCASGRTHFDLSGAAFGRMAVAGAGSRLRNRGELSILYRRTPCTYRGKNIAFHVNEGSTDHWLSLLVEFEDGDGDIGSMQIKQASSNEWMEMSHVWGATWCINGGPLRGPFSVKLTTLSTAKTLSARDVIPKNWSPKATYTSRLNFS 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1101870 1104656 + MC04g0145 Mch4g0162 684874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0162 271 SMART dpbb_1 80 162 IPR007112 -
Mch4g0162 271 SUPERFAMILY PHL pollen allergen 172 266 IPR036749 -
Mch4g0162 271 Pfam Expansin C-terminal domain 174 255 IPR007117 -
Mch4g0162 271 CDD DPBB_EXPB_N 44 167 - -
Mch4g0162 271 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Mch4g0162 271 PRINTS Expansin/Lol pI family signature 84 102 IPR007118 GO:0005576(InterPro)
Mch4g0162 271 PRINTS Expansin/Lol pI family signature 43 58 IPR007118 GO:0005576(InterPro)
Mch4g0162 271 PRINTS Expansin/Lol pI family signature 213 227 IPR007118 GO:0005576(InterPro)
Mch4g0162 271 PRINTS Expansin/Lol pI family signature 252 266 IPR007118 GO:0005576(InterPro)
Mch4g0162 271 PRINTS Expansin/Lol pI family signature 155 171 IPR007118 GO:0005576(InterPro)
Mch4g0162 271 Pfam Lytic transglycolase 82 149 IPR009009 -
Mch4g0162 271 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 185 266 IPR007117 -
Mch4g0162 271 PANTHER EXPANSIN-B3 23 270 - GO:0006949(PANTHER)|GO:0009506(PANTHER)
Mch4g0162 271 Gene3D - 169 271 IPR036749 -
Mch4g0162 271 FunFam Beta-expansin 3 169 271 - -
Mch4g0162 271 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 62 172 IPR007112 -
Mch4g0162 271 SUPERFAMILY Barwin-like endoglucanases 37 171 IPR036908 -
Mch4g0162 271 FunFam Expansin B3 30 168 - -
Mch4g0162 271 PRINTS Major pollen allergen Lol pI signature 192 207 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Mch4g0162 271 PRINTS Major pollen allergen Lol pI signature 176 191 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Mch4g0162 271 PRINTS Major pollen allergen Lol pI signature 122 137 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Mch4g0162 271 PRINTS Major pollen allergen Lol pI signature 144 159 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Mch4g0162 271 PRINTS Major pollen allergen Lol pI signature 82 93 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Mch4g0162 271 PRINTS Major pollen allergen Lol pI signature 242 259 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Mch4g0162 271 Gene3D - 29 168 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0162 Mch-Chr4:1101870 Mch4g0432 Mch-Chr4:2755437 2.62E-32 dispersed
Mch5g0027 Mch-Chr5:235024 Mch4g0162 Mch-Chr4:1101870 1.79E-80 transposed
Mch6g2118 Mch-Chr6:23421744 Mch4g0162 Mch-Chr4:1101870 5.30E-32 transposed
Mch2g0561 Mch-Chr2:3936759 Mch4g0162 Mch-Chr4:1101870 6.11E-156 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0162 K20628 - csv:101205324 460.685