Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0169 ATGGGTGGTTGTGTCTCTACAAGCAGCCACAGTACATGTAGTAGCCAGAGCAATGGGGAACCAGTTTCTTCCTCGTGTCTGAGAATTGGATTTCGACGGCAGAAGCGAACGAAAAGAACATTCTCGGACCATGTTTATGCTCTGCAGAATCTTCCTTCAGCTCCCAACAGGATCTTCATGAATGGAAAAAGTCGTTCTTCTTGCATATTTACACAACAAGGTCGCAAGGGCATAAACCAAGATGCCATGATCGTGTGGGAAGATTTCATGTCGGAGGAAACAATATTTTGCGGTGTATTCGATGGTCATGGACCCTACGGTCATCTCGTTGCTCGAAAAGTGAGGGATACACTGCCTATAAAGTTGATGTCGTTCTTCGAGTCTCCTCAGTCGAAGCAAAATGACTCTGGTAAAACCTGTTTTCAGAAGAATTTGAAGAAACCACCGGATTGTGATGGTTCTGAGAAGGATGGTTTTGTAGAGGATGGGCTAAATTCGGTATGGAGAGATGCGTTTTTGAACTCATATAAAGCTATGGATAAGGAATTGAGATCACATCCTAATCTGGACTGCTTTTGTAGTGGTAGTACTGCAGTCACCATAGTTAAACAGGGGTCAAATCTCTTCATGGGGTATATAGGGGACTCTCGGGCAATCCTTGCTTCCAAGGATGCCAATAATTCGACTGTGGCGACCCAATTGACCGTAGATCTTAAGCCCGATTTGCCTAGAGAAGCCGAAAGAATAAAACGGTGTAAAGGCAGGGTCTTTGCATTGCAAGATGAGCCTGAAGTGCCAAGGGTATGGTTACCTTTTGATGATGCGCCTGGTTTAGCAATGGCTCGAGCATTTGGCGATTTTTGTTTGAAGGAATATGGAGTCATCTCGATACCCGAGTTTTCTCATCGAACACTTACAGATGCGGATCAGTTTGTTGTTCTTGCATCAGATGGGGTATGGGATGTGTTGAGCAATGAAGAGGTGGTTGACATAGTGTCCTCGGCCCCAACCCGGTCGTCAGCTGCAAGGTTTGTGGTTGACTCTGCTGCTCGCGAATGGAAACTCAAATACCCCACCTCAAAAATGGATGACTGTGCAGTCGTCTGCTTGTTTCTGGACAGGAGGATGGACTCCGAATCCGACTGCGAGGAACAAGGCTTTTTGTCTGCAACATTGCGGAGTAATCATTCGGGTACTGCTATTGAGTCGGATGATGGCCAGAGGTCTGAGCCATGTCTGCAAAGGAATAACACTGTCAGATCATCCGAAGAAAAGGATTCTTACACAGGATTACCTGTTGACGATATGGAAATTGGCGATGCTGTAGCCGCAGAAGATCAAAACTGGTCGGGTTTAGAAGGAGTCACGCGAGTAAACTCGCTTGTCCAACTTCCTAGATTTTCAGAGGAAAGGCCAGTTTCGTAG 1425 46.04 MGGCVSTSSHSTCSSQSNGEPVSSSCLRIGFRRQKRTKRTFSDHVYALQNLPSAPNRIFMNGKSRSSCIFTQQGRKGINQDAMIVWEDFMSEETIFCGVFDGHGPYGHLVARKVRDTLPIKLMSFFESPQSKQNDSGKTCFQKNLKKPPDCDGSEKDGFVEDGLNSVWRDAFLNSYKAMDKELRSHPNLDCFCSGSTAVTIVKQGSNLFMGYIGDSRAILASKDANNSTVATQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRTLTDADQFVVLASDGVWDVLSNEEVVDIVSSAPTRSSAARFVVDSAAREWKLKYPTSKMDDCAVVCLFLDRRMDSESDCEEQGFLSATLRSNHSGTAIESDDGQRSEPCLQRNNTVRSSEEKDSYTGLPVDDMEIGDAVAAEDQNWSGLEGVTRVNSLVQLPRFSEERPVS 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1134981 1138434 + MC04g0147 Mch4g0169 684881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0169 474 SUPERFAMILY PP2C-like 56 373 IPR036457 -
Mch4g0169 474 Pfam Protein phosphatase 2C 167 349 IPR001932 -
Mch4g0169 474 SMART PP2C_4 55 370 IPR001932 -
Mch4g0169 474 Gene3D - 56 375 IPR036457 -
Mch4g0169 474 FunFam probable protein phosphatase 2C 52 57 375 - -
Mch4g0169 474 PANTHER PROTEIN PHOSPHATASE 67 371 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Mch4g0169 474 MobiDBLite consensus disorder prediction 398 433 - -
Mch4g0169 474 ProSiteProfiles PPM-type phosphatase domain profile. 66 372 IPR001932 -
Mch4g0169 474 CDD PP2Cc 65 372 IPR001932 -
Mch4g0169 474 MobiDBLite consensus disorder prediction 398 418 - -
Mch4g0169 474 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0169 Mch-Chr4:1134981 Mch7g0184 Mch-Chr7:2298077 3.42E-131 dispersed
Mch10g1456 Mch-Chr10:14397752 Mch4g0169 Mch-Chr4:1134981 2.55E-141 transposed
Mch11g0402 Mch-Chr11:2536674 Mch4g0169 Mch-Chr4:1134981 9.93E-90 transposed
Mch6g1401 Mch-Chr6:12315767 Mch4g0169 Mch-Chr4:1134981 1.49E-128 transposed
Mch8g2467 Mch-Chr8:27594408 Mch4g0169 Mch-Chr4:1134981 4.85E-144 transposed
Mch2g0574 Mch-Chr2:4009574 Mch4g0169 Mch-Chr4:1134981 6.18E-215 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0169 - - - 0.0