Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0174 ATGGGTTGGAAGAGATCTTCGAGTAATGGCAATTTGAGGATCTGCGTCCAGATTTTAGTCGGATTCGTGATCTGCGCAGCCCAAGTTATTTTTGGAGTAACGAATCCAGGCGATTTTGCTGCCATTAGCAGCTTACATACCTCACTGGGACTCCCCATTCTTCCTGGATGGGGCACTGGGCAAGACCCATGTGGAGATGCATGGCAGGGTGTCGTATGTAATGATTCAAGCATCATTAAAATAATTCTTAATGCTGCTAATTTGGGAGGTGAACTGGGTGACAGCTTGGGATTGTTTTCTTCCATCCAAATAATTGATTTAAGCAACAATCATATAGGGGGAAGTATTCCATCCAATGTACCCGTCACAATGCAGAACATTTTTCTTTCAGCTAATCAGTTCTCTGGAAGCATTCCGAGTTCATTATCATCTTTGGTTCAGCTGACAGCCATGTCGTTGAATGATAACAAATTAAGTGGTCAAATACCCGATTCCTTTCAAGCTATTACCGGATTGGTCAATCTGGATTTATCCAATAACAACTTGAGTGGGCCACTGCCCCCTTCCGTTGAAAACTTATTGGCATTGACCACCCTACACTTGCAGAATAATCAACTATCAGGGACCCTTGATGTTTTACAAGACCTTCCACTGAAAGACCTGAATATAGAGAACAACCTTTTTTCTGGACCCATACCTGAGAAGTTGCTGAGTATCCCTACTTTTAGAAAGGATGGAAACCCATTTAATTCTTCTGTTTCTCCAACATCTCCGACATCTCCGGCATCTCCTCCTGTATCTCCATCAAAGCCCTCACCAGCACCACCACTTTCTGGGGCACCACCATCGCCACCTTCTCAACAAAAACCTAGGAAACAGGCTGATGGACCATCTGCACCTGAGGAATCCAGTACTGGAAGAAATAAGAAAAGCACTAAAAGGGTTGTTTTGATAACAATTGCAGTGATATTGTCATTCGTAATTTTGGTTTTGGCATGTGTGCTTTTTATGCCAAGGTGCAGAAGGAGGAGAACGGTTGATAGTATTTCCAAGCGACATCAGCGACATCAGATAGGTGCTTATAGGGGTGAGAGAGAGAATGCTGGAAATGATGGATCCATGCACCAAACAATTGATCAGATGCCTAAAGTTCCAAAAGAGGCAGTTGTAAGGCCGAAGCAGGAAAGTCAAACAGAGGCTCAGAAGGTTCCAAAAGCTCATGAAGAGAGAGAAAGAAACAAACTGAGAATGAACGCTATTCCAAAGAAGGATGATCATGAAATAGATATGAGTGCACTTGATGTCTATCTAATGCCTCCTCCACCACCACCTCCTCCTCCCCCTCCACCACCACCTCCCGTTGAAAAGCTCACTGCCGAGCCCATTGTTCCAGCTGATGTTACTCCCATGAAGCCTCCCACCAAACGTAAAATCACCTCAACTTTTGCAAAATCTTACACCATCGCATCCCTCCAGCAATATACAAACAGCTTTTCACAGGAGAATATTCTAGGAGAAGGAATGCTGGGGAGTGTTTATAGAGCACAGCTTCCCAGTGGGAAGCTACTGGCCGTCAAGAAACTGGATAAGAGAGCATTCAGTCAGCAAAAGGATGATGAATTTCTCGAGTTAGTGAATAATATTGATAAAATCCGGCATGCCAATGTGGTTGAGCTCAGTGGTTACTGTGCAGAGCATGGTGAAAGGCTTCTGATCTATGAGTATTGCAGTAATGGAACATTGCAGGATGCACTACACTCAGACGAAGAGTTCAGAAAAAAACTTTCGTGGAATGCTCGCATTAGAATGGCTCTTGGGGCTGCAAGAGCCTTGGAGTATCTACATGAGTCCTGTCAGCCACCTGTCATTCATAGGAATTTCAAGTCTGCAAATGTCCTACTTGATGAAGATCTGTCAGTGCGTGTTTCAGATTGTGGTCTCGCTCCATTAATATCAAAAGGAGCTGTTAGTCAGCTATCAGGTCAGCTTCTAACAGCATATGGTTACGGAGCGCCAGAATTTGAGTCGGGAGTTTATACACTTGAGAGTGACGTTTATAGCTTTGGTGTGGTTATGCTGGAACTTCTAACTGGCCGGATGTCTTATGACAGAACAAGGACCCGAGGTGAACAATTTTTAGTCAGATGGGCGATTCCACAGCTTCACGACATAGAGGCATTAACGAGCATGGTTGATTCTTCCCTCAATGGTCAATATCCTGCCAAATCCTTATCATACTTCGCGGATATCATATCAAAATGTGTTCAGTCGGAGCCTGAATTTCGGCCTCCGATGTCATCGGTTGTTCAGGATTTGCTCAACATGATAAGGAGAGAACCCCATGGCAGTGGTTCCAGTGAAGATTGA 2367 44.23 MGWKRSSSNGNLRICVQILVGFVICAAQVIFGVTNPGDFAAISSLHTSLGLPILPGWGTGQDPCGDAWQGVVCNDSSIIKIILNAANLGGELGDSLGLFSSIQIIDLSNNHIGGSIPSNVPVTMQNIFLSANQFSGSIPSSLSSLVQLTAMSLNDNKLSGQIPDSFQAITGLVNLDLSNNNLSGPLPPSVENLLALTTLHLQNNQLSGTLDVLQDLPLKDLNIENNLFSGPIPEKLLSIPTFRKDGNPFNSSVSPTSPTSPASPPVSPSKPSPAPPLSGAPPSPPSQQKPRKQADGPSAPEESSTGRNKKSTKRVVLITIAVILSFVILVLACVLFMPRCRRRRTVDSISKRHQRHQIGAYRGERENAGNDGSMHQTIDQMPKVPKEAVVRPKQESQTEAQKVPKAHEERERNKLRMNAIPKKDDHEIDMSALDVYLMPPPPPPPPPPPPPPPVEKLTAEPIVPADVTPMKPPTKRKITSTFAKSYTIASLQQYTNSFSQENILGEGMLGSVYRAQLPSGKLLAVKKLDKRAFSQQKDDEFLELVNNIDKIRHANVVELSGYCAEHGERLLIYEYCSNGTLQDALHSDEEFRKKLSWNARIRMALGAARALEYLHESCQPPVIHRNFKSANVLLDEDLSVRVSDCGLAPLISKGAVSQLSGQLLTAYGYGAPEFESGVYTLESDVYSFGVVMLELLTGRMSYDRTRTRGEQFLVRWAIPQLHDIEALTSMVDSSLNGQYPAKSLSYFADIISKCVQSEPEFRPPMSSVVQDLLNMIRREPHGSGSSED 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1164393 1172287 + MC04g0150 Mch4g0174 684886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0174 788 MobiDBLite consensus disorder prediction 289 305 - -
Mch4g0174 788 MobiDBLite consensus disorder prediction 258 288 - -
Mch4g0174 788 Gene3D Ribonuclease Inhibitor 40 257 IPR032675 -
Mch4g0174 788 MobiDBLite consensus disorder prediction 351 416 - -
Mch4g0174 788 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 576 785 - -
Mch4g0174 788 MobiDBLite consensus disorder prediction 386 416 - -
Mch4g0174 788 Gene3D Transferase(Phosphotransferase) domain 1 576 780 - -
Mch4g0174 788 SUPERFAMILY Protein kinase-like (PK-like) 474 772 IPR011009 -
Mch4g0174 788 Pfam Leucine Rich Repeat 148 167 IPR001611 GO:0005515(InterPro)
Mch4g0174 788 Pfam Leucine Rich Repeat 172 193 IPR001611 GO:0005515(InterPro)
Mch4g0174 788 Pfam Leucine Rich Repeat 101 119 IPR001611 GO:0005515(InterPro)
Mch4g0174 788 ProSiteProfiles Protein kinase domain profile. 498 776 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g0174 788 Gene3D Phosphorylase Kinase; domain 1 466 575 - -
Mch4g0174 788 MobiDBLite consensus disorder prediction 247 310 - -
Mch4g0174 788 PANTHER LEUCINE RICH REPEAT KINASE 2 74 774 IPR051420 -
Mch4g0174 788 SUPERFAMILY Formin homology 2 domain (FH2 domain) 442 451 - -
Mch4g0174 788 SUPERFAMILY L domain-like 51 240 - -
Mch4g0174 788 Pfam Protein tyrosine and serine/threonine kinase 500 772 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g0174 788 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 35 261 - -
Mch4g0174 788 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 465 575 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0174 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0174 Mch-Chr4:1164393 Mch8g1013 Mch-Chr8:7183135 9.52E-120 dispersed
Mch1g1840 Mch-Chr1:18462526 Mch4g0174 Mch-Chr4:1164393 1.01E-186 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch4g0174 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.9 1.8e-209 726.1
Mch1g1840 . 29 750 Strubbelig Receptor Gene Family AT4G03390 53.6 2.3e-159 559.7
Mch5g1424 . 9 726 Strubbelig Receptor Gene Family AT5G06820 51.1 1.7e-172 603.2
Mch4g1111 . 23 689 Strubbelig Receptor Gene Family AT1G78980 58.4 5.9e-183 637.9
Mch9g0166 . 28 690 Strubbelig Receptor Gene Family AT1G78980 52.9 1.8e-131 466.8
Mch4g1111 . 2 666 Strubbelig Receptor Gene Family AT3G13065 52.6 8.0e-140 494.6
Mch9g0166 . 7 685 Strubbelig Receptor Gene Family AT3G13065 51.1 5.0e-110 395.6
Mch3g0804 . 361 654 Strubbelig Receptor Gene Family AT1G11130 53.1 5.6e-85 312.4
Mch9g0166 . 397 685 Strubbelig Receptor Gene Family AT1G11130 52.9 1.4e-83 307.8
Mch5g1424 . 9 726 Strubbelig Receptor Gene Family AT5G06820 51.1 1.7e-172 603.2
Mch4g0174 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.9 1.8e-209 726.1
Mch1g1840 . 29 750 Strubbelig Receptor Gene Family AT4G03390 53.6 2.3e-159 559.7
Mch4g1111 . 2 666 Strubbelig Receptor Gene Family AT3G13065 52.6 8.0e-140 494.6
Mch9g0166 . 7 685 Strubbelig Receptor Gene Family AT3G13065 51.1 5.0e-110 395.6
Mch4g1111 . 23 689 Strubbelig Receptor Gene Family AT1G78980 58.4 5.9e-183 637.9
Mch9g0166 . 28 690 Strubbelig Receptor Gene Family AT1G78980 52.9 1.8e-131 466.8
Mch8g1013 . 1 736 Strubbelig Receptor Gene Family AT1G53730 59.6 2.2e-209 725.7
Mch9g0166 . 1 696 Strubbelig Receptor Gene Family AT1G53730 64.4 1.6e-199 693.0
Mch3g0804 . 5 677 Strubbelig Receptor Gene Family AT1G53730 53.9 3.4e-149 525.8
Mch8g1013 . 11 734 Strubbelig Receptor Gene Family AT3G14350 51.5 3.4e-183 638.6
Mch9g0166 . 11 702 Strubbelig Receptor Gene Family AT3G14350 54.8 1.1e-173 607.1
Mch3g0804 . 208 685 Strubbelig Receptor Gene Family AT4G22130 69.7 3.3e-176 615.1
Mch8g1013 . 429 752 Strubbelig Receptor Gene Family AT4G22130 64.4 1.7e-119 426.8
Mch9g0166 . 391 704 Strubbelig Receptor Gene Family AT4G22130 64.9 1.3e-116 417.2
Mch4g0174 . 483 778 Strubbelig Receptor Gene Family AT4G22130 61.6 1.2e-106 384.0
Mch1g1840 . 461 750 Strubbelig Receptor Gene Family AT4G22130 60.1 7.3e-99 358.2
Mch4g1111 . 379 688 Strubbelig Receptor Gene Family AT4G22130 55.8 7.3e-99 358.2
Mch5g1424 . 375 695 Strubbelig Receptor Gene Family AT4G22130 51.7 9.6e-91 331.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003611 2 1 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 0 1 1 1 1 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77307 PF07714 PK_Tyr_Ser-Thr 8.00E-44 CL0016 Mch PK