Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0180 GTGGTTTGTCTTGACTGCAGTAGCGGAGGTCTATTGGCATATGCAGAATCACGATCAGACACTGGCAATCCTATTGAGGAGTGCCCAAAAAAGAGAGTTCTGGTGCTTGGAACAGGATGGGCCGGTATCAGTTTCCTCAAGGATCTGGATGCTTCAATATATGATGTTCAGGTTGTTTCGCCTCAGAATTATTTCTCATTTACTCCTTTGTTACCTAGTGTTACATGTGGAACAGTTGAAGCACGGAGCATTGTCGAACCAGTTCGAAACATCGTGAAGAAGAGAAAAGGTGAAATTAAATTCTGGGAAGCTGAATGCATTAAGATTGATGCTGCAAACAAAAAGGTTTTCTGCCGGTCTAATGTTGACAATAACTTGGTTGGAAATAGGGAGTTCGATTTAGAATATGACTATTTGGTAATAGCAATGGGAGCACAAGTAAATACTTTTAATACGCCTGGTGTCAAGGAGAACTGTCATTTTCTCAAGGAAGTGGAAGATGCTCTGAAGATCCGCAGAAGTGTTATAGATTGCTTTGAAATGGCTGTTATTCCCAGTCTTAGTGACGAAGAGAGAAGGGAAAATCTTCATTTCGTTATTGTTGGAGGGGGTCCCACTGGGATTGAATTTGCTGCAGAGCTTAATGACTTTTTGGAAGAAGATTTAGTTAATCTATATCCTACGGTTAAAGATCTGGTGAAAATTTCAGTGATTCAATCAGGAGATCACATCTTGAATGCGTTTGATGAAAGAATTAGTTCATTTGCGGAACAAAAGTTCCAAAGAGATGGTATCGATGTGTACACAGGATGTCGGGTTGTCAGTGTATCTGATAAGGACATTAAGATGAAGGTGAAATCAACTGGAGAATTCTGTTCAATACCGCATGGACTAATTGTGTGGTCTACGGGCATCATGACTCGTCCTGTTGTGAAGGATTTCATGGAGCAGATTGGCCAGGGCAAGAGACGTATTCTAGCTACTGATGAATGGCTTCAAGTGAAGGGCACTCAGAATGTGTATGCCATTGGTGATTGTGCTACAATTGACCAACGCAAAATTATGGAAGATATCTCCACCATATTTAAAGCTGCAGATAAAGATGATTCTGGAACCTTGACAGTTAAAGAATTTCAAGATGTTATAGATGATATCCTCATAAGGTATCCTCAAGTGGAAATATATTTGAGGAGCAAACATCTACGCGATGTTAAAGATCTGTTGAAAGATTCTCAGGGGCATGAGAACGGTGTAGATATTGAAGGATTTAAGTCAGCTCTTTCTCACGCTGACTCGCAGATGAAAAGTCTTCCTGCTACTGCACAGGTTGCTGCCCAGCAGGGTGCGTATCTTTCCAGGTGCTTCAACCGCAGGGAGCATTGCACTGAGAATCCTGAAGGCCCACGACAGTTTAAGAGTTCTGGACGTCATCTATTTCTTCCCTTTCGGTACAAGCACTTGGGACAGTTCGCTCCTTTAGGAGGAGAACAAGCTGCTGCAGAACTCCCTGGAGACTTGGTTTCCATGGGTCGCAGCACTCAGTGGCTCTGGTATTCTGTATATGCAAGCAAGCAGGTCAGCTGGCGCACAAGGTTTCTAGTAGTATCAGACTGGACAAGAAAGTTTATCTTCGGGAGAGACTCAAGCCGCATCTGA 1656 42.75 VVCLDCSSGGLLAYAESRSDTGNPIEECPKKRVLVLGTGWAGISFLKDLDASIYDVQVVSPQNYFSFTPLLPSVTCGTVEARSIVEPVRNIVKKRKGEIKFWEAECIKIDAANKKVFCRSNVDNNLVGNREFDLEYDYLVIAMGAQVNTFNTPGVKENCHFLKEVEDALKIRRSVIDCFEMAVIPSLSDEERRENLHFVIVGGGPTGIEFAAELNDFLEEDLVNLYPTVKDLVKISVIQSGDHILNAFDERISSFAEQKFQRDGIDVYTGCRVVSVSDKDIKMKVKSTGEFCSIPHGLIVWSTGIMTRPVVKDFMEQIGQGKRRILATDEWLQVKGTQNVYAIGDCATIDQRKIMEDISTIFKAADKDDSGTLTVKEFQDVIDDILIRYPQVEIYLRSKHLRDVKDLLKDSQGHENGVDIEGFKSALSHADSQMKSLPATAQVAAQQGAYLSRCFNRREHCTENPEGPRQFKSSGRHLFLPFRYKHLGQFAPLGGEQAAAELPGDLVSMGRSTQWLWYSVYASKQVSWRTRFLVVSDWTRKFIFGRDSSRI 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1210582 1214971 + MC04g0156 Mch4g0180 684892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0180 551 SUPERFAMILY EF-hand 306 430 IPR011992 -
Mch4g0180 551 Pfam NDH2 C-terminal domain 486 547 IPR054585 -
Mch4g0180 551 Gene3D - 401 550 - -
Mch4g0180 551 Gene3D - 24 377 - -
Mch4g0180 551 ProSiteProfiles EF-hand calcium-binding domain profile. 353 388 IPR002048 GO:0005509(InterPro)
Mch4g0180 551 Pfam Pyridine nucleotide-disulphide oxidoreductase 32 354 IPR023753 GO:0016491(InterPro)
Mch4g0180 551 PRINTS FAD-dependent pyridine nucleotide reductase signature 33 52 - -
Mch4g0180 551 PRINTS FAD-dependent pyridine nucleotide reductase signature 136 154 - -
Mch4g0180 551 PRINTS FAD-dependent pyridine nucleotide reductase signature 197 215 - -
Mch4g0180 551 SUPERFAMILY FAD/NAD(P)-binding domain 30 249 IPR036188 -
Mch4g0180 551 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 22 382 - -
Mch4g0180 551 ProSitePatterns EF-hand calcium-binding domain. 366 378 IPR018247 -
Mch4g0180 551 SUPERFAMILY FAD/NAD(P)-binding domain 196 350 IPR036188 -
Mch4g0180 551 PANTHER NADH DEHYDROGENASE 27 551 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0833 Mch-Chr2:5723072 Mch4g0180 Mch-Chr4:1210582 1.42E-68 dispersed
Mch1g1834 Mch-Chr1:18437797 Mch4g0180 Mch-Chr4:1210582 4.24E-64 wgd
Mch2g0589 Mch-Chr2:4066076 Mch4g0180 Mch-Chr4:1210582 4.03E-264 wgd
Mch3g1172 Mch-Chr3:14961359 Mch4g0180 Mch-Chr4:1210582 3.59E-276 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0180 K03885 - csv:101203130 1013.06