Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch4g0180 | GTGGTTTGTCTTGACTGCAGTAGCGGAGGTCTATTGGCATATGCAGAATCACGATCAGACACTGGCAATCCTATTGAGGAGTGCCCAAAAAAGAGAGTTCTGGTGCTTGGAACAGGATGGGCCGGTATCAGTTTCCTCAAGGATCTGGATGCTTCAATATATGATGTTCAGGTTGTTTCGCCTCAGAATTATTTCTCATTTACTCCTTTGTTACCTAGTGTTACATGTGGAACAGTTGAAGCACGGAGCATTGTCGAACCAGTTCGAAACATCGTGAAGAAGAGAAAAGGTGAAATTAAATTCTGGGAAGCTGAATGCATTAAGATTGATGCTGCAAACAAAAAGGTTTTCTGCCGGTCTAATGTTGACAATAACTTGGTTGGAAATAGGGAGTTCGATTTAGAATATGACTATTTGGTAATAGCAATGGGAGCACAAGTAAATACTTTTAATACGCCTGGTGTCAAGGAGAACTGTCATTTTCTCAAGGAAGTGGAAGATGCTCTGAAGATCCGCAGAAGTGTTATAGATTGCTTTGAAATGGCTGTTATTCCCAGTCTTAGTGACGAAGAGAGAAGGGAAAATCTTCATTTCGTTATTGTTGGAGGGGGTCCCACTGGGATTGAATTTGCTGCAGAGCTTAATGACTTTTTGGAAGAAGATTTAGTTAATCTATATCCTACGGTTAAAGATCTGGTGAAAATTTCAGTGATTCAATCAGGAGATCACATCTTGAATGCGTTTGATGAAAGAATTAGTTCATTTGCGGAACAAAAGTTCCAAAGAGATGGTATCGATGTGTACACAGGATGTCGGGTTGTCAGTGTATCTGATAAGGACATTAAGATGAAGGTGAAATCAACTGGAGAATTCTGTTCAATACCGCATGGACTAATTGTGTGGTCTACGGGCATCATGACTCGTCCTGTTGTGAAGGATTTCATGGAGCAGATTGGCCAGGGCAAGAGACGTATTCTAGCTACTGATGAATGGCTTCAAGTGAAGGGCACTCAGAATGTGTATGCCATTGGTGATTGTGCTACAATTGACCAACGCAAAATTATGGAAGATATCTCCACCATATTTAAAGCTGCAGATAAAGATGATTCTGGAACCTTGACAGTTAAAGAATTTCAAGATGTTATAGATGATATCCTCATAAGGTATCCTCAAGTGGAAATATATTTGAGGAGCAAACATCTACGCGATGTTAAAGATCTGTTGAAAGATTCTCAGGGGCATGAGAACGGTGTAGATATTGAAGGATTTAAGTCAGCTCTTTCTCACGCTGACTCGCAGATGAAAAGTCTTCCTGCTACTGCACAGGTTGCTGCCCAGCAGGGTGCGTATCTTTCCAGGTGCTTCAACCGCAGGGAGCATTGCACTGAGAATCCTGAAGGCCCACGACAGTTTAAGAGTTCTGGACGTCATCTATTTCTTCCCTTTCGGTACAAGCACTTGGGACAGTTCGCTCCTTTAGGAGGAGAACAAGCTGCTGCAGAACTCCCTGGAGACTTGGTTTCCATGGGTCGCAGCACTCAGTGGCTCTGGTATTCTGTATATGCAAGCAAGCAGGTCAGCTGGCGCACAAGGTTTCTAGTAGTATCAGACTGGACAAGAAAGTTTATCTTCGGGAGAGACTCAAGCCGCATCTGA | 1656 | 42.75 | VVCLDCSSGGLLAYAESRSDTGNPIEECPKKRVLVLGTGWAGISFLKDLDASIYDVQVVSPQNYFSFTPLLPSVTCGTVEARSIVEPVRNIVKKRKGEIKFWEAECIKIDAANKKVFCRSNVDNNLVGNREFDLEYDYLVIAMGAQVNTFNTPGVKENCHFLKEVEDALKIRRSVIDCFEMAVIPSLSDEERRENLHFVIVGGGPTGIEFAAELNDFLEEDLVNLYPTVKDLVKISVIQSGDHILNAFDERISSFAEQKFQRDGIDVYTGCRVVSVSDKDIKMKVKSTGEFCSIPHGLIVWSTGIMTRPVVKDFMEQIGQGKRRILATDEWLQVKGTQNVYAIGDCATIDQRKIMEDISTIFKAADKDDSGTLTVKEFQDVIDDILIRYPQVEIYLRSKHLRDVKDLLKDSQGHENGVDIEGFKSALSHADSQMKSLPATAQVAAQQGAYLSRCFNRREHCTENPEGPRQFKSSGRHLFLPFRYKHLGQFAPLGGEQAAAELPGDLVSMGRSTQWLWYSVYASKQVSWRTRFLVVSDWTRKFIFGRDSSRI | 551 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1210582 | 1214971 | + | MC04g0156 | Mch4g0180 | 684892 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch4g0180 | 551 | SUPERFAMILY | EF-hand | 306 | 430 | IPR011992 | - | |
Mch4g0180 | 551 | Pfam | NDH2 C-terminal domain | 486 | 547 | IPR054585 | - | |
Mch4g0180 | 551 | Gene3D | - | 401 | 550 | - | - | |
Mch4g0180 | 551 | Gene3D | - | 24 | 377 | - | - | |
Mch4g0180 | 551 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 353 | 388 | IPR002048 | GO:0005509(InterPro) | |
Mch4g0180 | 551 | Pfam | Pyridine nucleotide-disulphide oxidoreductase | 32 | 354 | IPR023753 | GO:0016491(InterPro) | |
Mch4g0180 | 551 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 33 | 52 | - | - | |
Mch4g0180 | 551 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 136 | 154 | - | - | |
Mch4g0180 | 551 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 197 | 215 | - | - | |
Mch4g0180 | 551 | SUPERFAMILY | FAD/NAD(P)-binding domain | 30 | 249 | IPR036188 | - | |
Mch4g0180 | 551 | FunFam | External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial | 22 | 382 | - | - | |
Mch4g0180 | 551 | ProSitePatterns | EF-hand calcium-binding domain. | 366 | 378 | IPR018247 | - | |
Mch4g0180 | 551 | SUPERFAMILY | FAD/NAD(P)-binding domain | 196 | 350 | IPR036188 | - | |
Mch4g0180 | 551 | PANTHER | NADH DEHYDROGENASE | 27 | 551 | IPR045024 | GO:0003954(InterPro)|GO:0006116(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch2g0833 | Mch-Chr2:5723072 | Mch4g0180 | Mch-Chr4:1210582 | 1.42E-68 | dispersed | |
Mch1g1834 | Mch-Chr1:18437797 | Mch4g0180 | Mch-Chr4:1210582 | 4.24E-64 | wgd | |
Mch2g0589 | Mch-Chr2:4066076 | Mch4g0180 | Mch-Chr4:1210582 | 4.03E-264 | wgd | |
Mch3g1172 | Mch-Chr3:14961359 | Mch4g0180 | Mch-Chr4:1210582 | 3.59E-276 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch4g0180 | K03885 | - | csv:101203130 | 1013.06 |